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Diffstat (limited to 'sci-biology/samtools/samtools-1.9-r1.ebuild')
-rw-r--r--sci-biology/samtools/samtools-1.9-r1.ebuild49
1 files changed, 0 insertions, 49 deletions
diff --git a/sci-biology/samtools/samtools-1.9-r1.ebuild b/sci-biology/samtools/samtools-1.9-r1.ebuild
deleted file mode 100644
index 0d0f993895fc..000000000000
--- a/sci-biology/samtools/samtools-1.9-r1.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="examples"
-
-RDEPEND="
- dev-lang/perl
- =sci-libs/htslib-${PV}*
- sys-libs/ncurses:0=
- sys-libs/zlib:="
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
- default
-
- # remove bundled htslib
- rm -r htslib-* || die
-
- eautoreconf
-}
-
-src_test() {
- local -x LD_LIBRARY_PATH="${S}"
- default
-}
-
-src_install() {
- default
-
- # varfilter.py has been retired upstream for being py2 only
- rm "${ED}"/usr/bin/varfilter.py || die
-
- if use examples; then
- dodoc -r examples
- docompress -x /usr/share/doc/${PF}/examples
- fi
-}