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* sci-libs/ceres-solver: 2.2.0 fix automagic cuda dependencyPaul Zander2024-03-181-3/+23
| | | | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35779 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libint: add 2.9.0Sam James2024-03-172-0/+75
| | | | | | | | Filter LTO given it's a tonne of code generating stuff and it takes hours to build. Filld with reinterpret_cast. Closes: https://bugs.gentoo.org/862894 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/stellarsolver: filter LTOSam James2024-03-171-2/+9
| | | | | | | | | I haven't reported this upstream because I can't even build it with GCC 14 (bug #886465). Bug: https://bugs.gentoo.org/886465 Closes: https://bugs.gentoo.org/862930 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/qrupdate: filter LTOSam James2024-03-171-1/+4
| | | | | | | | We're already applying a Fortran workaround from GCC 10. No upstream activity in several years. Closes: https://bugs.gentoo.org/878989 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pdal: mark as LTO-unsafe, strict-aliasing unsafeEli Schwartz2024-03-171-1/+11
| | | | | | | | | ... but only for USE=debug, since the bug is inside the obscure libunwind support which most people don't use anyway. Closes: https://bugs.gentoo.org/862915 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/silo: add github upstream metadataSam James2024-03-171-0/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/silo: add 4.11.1Sam James2024-03-173-0/+109
| | | | | | | | * Partially fix tests with GCC 14 (reported another issue on the upstream PR for that). * Disable LTO and SA given the comments on a linked upstream bug wrt opimisation. Closes: https://bugs.gentoo.org/862927 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: 9.3.0 require USE=views for USE=renderingPaul Zander2024-03-161-2/+2
| | | | | | | | | With 9.3.0 we switched from soft failures to hard failures for conflicting config options. Clean up a bit of mess left behind. Closes: https://bugs.gentoo.org/926626 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35783 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: remove unused patch(es)Michael Mair-Keimberger2024-03-161-21/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/libnova: use httpsMichael Mair-Keimberger2024-03-161-1/+1
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/35771 Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* */*: Take over waebbl's packagesPaul Zander2024-03-162-10/+6
| | | | | | | | Bug: https://bugs.gentoo.org/639236 Bug: https://bugs.gentoo.org/659306 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35751 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 sparc, #923553Arthur Zamarin2024-03-161-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 amd64, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 arm64, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 arm, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 ppc64, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 ppc, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 x86, #923553Arthur Zamarin2024-03-151-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: backport test summary fixSam James2024-03-152-0/+22
| | | | | Closes: https://bugs.gentoo.org/924929 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gmsh: update HOMEPAGE (add self-hosted gitlab)Sam James2024-03-153-6/+6
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: mark as LTO-unsafeEli Schwartz2024-03-143-3/+18
| | | | | | Closes: https://bugs.gentoo.org/862702 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cgcode: filter LTO, no-SASam James2024-03-121-1/+5
| | | | | | | | Only ever had one release. LTO type mismatches and we already apply a nasty Fortran workaround for GCC 10. Closes: https://bugs.gentoo.org/862681 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: add USE=rocm flag for AMDGPU support for 2.1.2 and 2.2.1Sv. Lockal2024-03-114-18/+166
| | | | | | | Closes: https://bugs.gentoo.org/905286 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35713 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: fix compilation with USE=fbgemmSv. Lockal2024-03-111-1/+1
| | | | | | Closes: https://bugs.gentoo.org/926773 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/dcmtk: add 3.6.8Sam James2024-03-113-0/+108
| | | | | | | | Reported the LTO issue upstream via email. The one reported in bug #862699 seems fixed upstream in git but another one involving JPEG appeared. Closes: https://bugs.gentoo.org/862699 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dcmtk: add github upstream metadataSam James2024-03-111-0/+3
| | | | | | It's an official mirror. Signed-off-by: Sam James <sam@gentoo.org>
* Move {sci-libs → dev-python}/scikit-learnMichał Górny2024-03-107-104/+8
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/ceres-solver: add 2.2.0Andrew Ammerlaan2024-03-102-0/+90
| | | | | | Closes: https://bugs.gentoo.org/873265 Closes: https://bugs.gentoo.org/862678 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn: drop 1.1.2Sam James2024-03-102-65/+0
| | | | | Closes: https://bugs.gentoo.org/911369 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-learn: Stabilize 1.3.2-r1 ppc64, #920680Sam James2024-03-101-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-learn: Fix tests, QAMichał Górny2024-03-101-5/+22
| | | | | | | Deselect failing tests. Clean up the test phase. Use pytest-xdist and disable plugin autoloading for a major speedup. Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/metis: Stabilize 5.2.1-r2 amd64, #906314Sam James2024-03-101-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/metis: Stabilize 5.2.1-r2 sparc, #906314Arthur Zamarin2024-03-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/metis: Stabilize 5.2.1-r2 ppc64, #906314Arthur Zamarin2024-03-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/metis: Stabilize 5.2.1-r2 arm64, #906314Arthur Zamarin2024-03-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/metis: Stabilize 5.2.1-r2 arm, #906314Arthur Zamarin2024-03-101-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/branca: add 0.7.1Alfredo Tupone2024-03-092-0/+37
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/indilib: Keyword 2.0.6 riscv, #926356Jakov Smolić2024-03-091-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/rocWMMA: new package, add 5.7.1Sv. Lockal2024-03-084-0/+97
| | | | | | | Adds patch similar to https://github.com/ROCm/rocWMMA/pull/353 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipFFT: cleanup unused flags/variablesSv. Lockal2024-03-081-3/+1
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipCUB: install cmake files to /usr/lib64/cmake, not /usr/lib/cmakeSv. Lockal2024-03-081-22/+6
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocThrust: set include path in cmake config to correct oneSv. Lockal2024-03-081-1/+1
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipSOLVER: new package, add 5.7.1Sv. Lockal2024-03-083-0/+55
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocSPARSE: lock dev-util/hip version, as with hip-6.0 build fails ↵Sv. Lockal2024-03-081-3/+5
| | | | | | | with "no member named 'gcnArch'" Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocFFT: fix benchmark dependencies and collision with dev-util/perfSv. Lockal2024-03-081-4/+14
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocFFT: fix build with ld.lldSv. Lockal2024-03-082-1/+17
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocFFT: lock dev-util/hip version, as with hip-6.0 build fails with ↵Sv. Lockal2024-03-081-1/+1
| | | | | | | "no member named 'gcnArch'" Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: fix doxygen directorySv. Lockal2024-03-081-1/+1
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: disable stripping for *.hsaco filesSv. Lockal2024-03-081-0/+4
| | | | | Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: lock dev-util/hip version, as with hip-6.0 build fails ↵Sv. Lockal2024-03-081-1/+1
| | | | | | | with "no member named 'gcnArch'" Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>