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* sci-libs/scikit-image: scipy always has sparseSam James2022-07-313-5/+5
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: add github upstream metadataSam James2022-07-291-15/+18
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: drop 7.6.1-r2Bernd Waibel2022-07-272-172/+0
| | | | | | Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/26599 Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/hdf5: forward ~hppa ~s390Sam James2022-07-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: Stabilize 7.6.2-r1 amd64, #861119Joonas Niilola2022-07-261-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/nlopt: x86 stable wrt bug #859166Agostino Sarubbo2022-07-221-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/nlopt: amd64 stable wrt bug #859166Agostino Sarubbo2022-07-221-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/geos: fix doc buildSam James2022-07-201-1/+1
| | | | | Closes: https://bugs.gentoo.org/859373 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: fix installed Python module locationSam James2022-07-181-0/+111
| | | | | Closes: https://bugs.gentoo.org/859163 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 arm64, #842543Sam James2022-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: Fix musl missing execinfo.h checkbrahmajit das2022-07-152-0/+47
| | | | | | | | | | | | | Check if execinfo.h is present before including the header. The check is preset in other parts of the souce code, here it was only being checked if it's WIN32 or CYGIWIN before including execinfo.h as a result build was failing on musl. Closes: https://bugs.gentoo.org/828677 Signed-off-by: brahmajit das <brahmajit.xyz@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26284 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib-modules: drop 4.3.4Sam James2022-07-151-69/+0
| | | | | Bug: https://bugs.gentoo.org/858170 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib-modules: Stabilize 4.3.4-r1 amd64, #858170Sam James2022-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib-modules: drop 4.3.3-r1Sam James2022-07-152-70/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib: drop 4.3.4Sam James2022-07-102-179/+0
| | | | | Bug: https://bugs.gentoo.org/857141 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib: Stabilize 4.3.4-r1 amd64, #857141Sam James2022-07-101-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: x86 stable wrt bug #856550Agostino Sarubbo2022-07-091-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/nlopt: amd64 stable wrt bug #856550Agostino Sarubbo2022-07-091-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/rocFFT: rocm-cmake-5.0.2-r1 which fix doc installYiyang Wu2022-07-091-1/+1
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/26286 Closes: https://bugs.gentoo.org/836274 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocFFT: add libomp to BDEPEND when using testYiyang Wu2022-07-092-2/+2
| | | | | | | | One src file of test need omp.h header provided by sys-libs/libomp Closes: https://bugs.gentoo.org/836248 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocFFT: Correct BDEPENDYiyang Wu2022-07-092-4/+4
| | | | | | | | | Building rocFFT always needs rocm-cmake. If it's not present, cmake will try to download, causing bug #850937 Closes: https://bugs.gentoo.org/850937 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/gdal: add 3.5.1Sam James2022-07-092-0/+240
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: respect MAKEOPTS when build Tensile libsYiyang Wu2022-07-092-2/+77
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/26285 Closes: https://bugs.gentoo.org/852236 Suggested-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/ViSP: bump to 3.5.0Alexis Ballier2022-07-072-0/+112
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/octomap: bump to 1.9.8Alexis Ballier2022-07-072-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/sundials: amd64 stable wrt bug #856553Agostino Sarubbo2022-07-071-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/dlib: add 19.24Andrew Ammerlaan2022-07-062-0/+102
| | | | | | | Fails to compile with python3_11 at the moment Closes: https://bugs.gentoo.org/846254 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/lmfit: Keyword 9.0-r1 arm64, #856388Arthur Zamarin2022-07-061-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/hdf5: add missing ? to REQUIRED_USEAlessandro Barbieri2022-07-051-1/+1
| | | | | | Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26233 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: add USE flags controlling caffe2Alfredo Tupone2022-07-052-0/+13
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pytorch: add 1.12.0James Beddek2022-07-032-0/+57
| | | | | | Signed-off-by: James Beddek <telans@posteo.de> Closes: https://github.com/gentoo/gentoo/pull/26209 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: add support for cudaJames Beddek2022-07-033-16/+63
| | | | | | | | | | add missing dev-libs/FXdiv dependency use gflags use glog <0.5.0 https://github.com/pytorch/pytorch/issues/58054 add myself as a maintainer Signed-off-by: James Beddek <telans@posteo.de> Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: add 1.12.0James Beddek2022-07-036-36/+371
| | | | | | | | add support fot QNNPACK, dev-python/numpy, opencv, ffmpeg, openmp, opencl add patch to fix install dirs Signed-off-by: James Beddek <telans@posteo.de> Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/med: add 4.1.1Bernd Waibel2022-07-032-0/+112
| | | | | | | Closes: https://bugs.gentoo.org/853694 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/26047 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: remove smem binaryAlessandro Barbieri2022-07-031-0/+87
| | | | | | | Closes: https://bugs.gentoo.org/855191 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26159 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: conflict with dev-util/smemAlessandro Barbieri2022-07-031-0/+1
| | | | | | Bug: https://bugs.gentoo.org/855191 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/caffe2: add support for nnpackAlfredo Tupone2022-07-023-2/+15
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/geos: add 3.11.0Sam James2022-07-022-0/+47
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: fix configure for xnnpackAlfredo Tupone2022-07-021-2/+2
| | | | | | Closes: https://bugs.gentoo.org/855860 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* Move {sci-libs → dev-python}/shapelyMichał Górny2022-07-027-170/+3
| | | | | | | | Shapely is really primarily a Python package, and it seems that the Python team is effectively going to maintain it going forward, so it fits more naturally in dev-python than sci-libs. Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/caffe2: add XNNPACK usageAlfredo Tupone2022-07-023-1/+28
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/shapely: Add python@ as co-maint.Michał Górny2022-07-021-0/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/shapely: Bump to 1.8.2Michał Górny2022-07-023-2/+53
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/hdf5: readd unsupported useflagAlessandro Barbieri2022-06-301-3/+7
| | | | | | Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26125 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: depend on newer ogdi w/ .pcSam James2022-06-301-1/+1
| | | | | | | No need for revbump as build-time only issue. Closes: https://bugs.gentoo.org/848015 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ogdi: install .pc fileSam James2022-06-301-1/+9
| | | | | Closes: https://bugs.gentoo.org/848015 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: keyword 4.2.0 for ~loongWANG Xuerui2022-06-291-1/+1
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/mpir: Stabilize 3.0.0-r1 arm64, #640424matoro2022-06-281-1/+1
| | | | | | | | | | Confirmed that this bug no longer occurs in 3.0.0, builds and passes tests fine. Tested on arm64. Closes: https://bugs.gentoo.org/640424 Signed-off-by: matoro <matoro@users.noreply.github.com> Closes: https://github.com/gentoo/gentoo/pull/26089 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: x86 stable wrt bug #854369Agostino Sarubbo2022-06-271-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: ppc64 stable wrt bug #854369Agostino Sarubbo2022-06-271-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>