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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
MY_P=GlimmerHMM
DESCRIPTION="A eukaryotic gene finding system from TIGR"
HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
SRC_URI="https://ccb.jhu.edu/software/glimmerhmm/dl/${MY_P}-${PV}.tar.gz"
S="${WORKDIR}/${MY_P}"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="amd64 ~x86"
PATCHES=(
"${FILESDIR}"/${PV}-gentoo.patch
"${FILESDIR}"/${PN}-3.0.1-fix-data-path.patch
"${FILESDIR}"/0001-fix-ridiculous-ODR-violation.patch
)
src_configure() {
tc-export CC CXX
}
src_compile() {
emake -C sources
emake -C train
}
src_install() {
dobin sources/glimmerhmm train/trainGlimmerHMM
insinto /usr/share/${PN}/lib
doins train/*.pm
insinto /usr/share/${PN}/models
doins -r trained_dir/.
exeinto /usr/libexec/${PN}/training_utils
doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
dodoc README.first train/readme.train
}
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