diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-01-26 20:43:21 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-01-26 20:43:21 +0000 |
| commit | a603136fb9d8da8f60de1cf62fe3b6b75bd5936d (patch) | |
| tree | 458046c5fc0efd5812d15c0d712c0b847fb939fa | |
| parent | Version bump. (diff) | |
| download | historical-a603136fb9d8da8f60de1cf62fe3b6b75bd5936d.tar.gz historical-a603136fb9d8da8f60de1cf62fe3b6b75bd5936d.tar.bz2 historical-a603136fb9d8da8f60de1cf62fe3b6b75bd5936d.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
RepoMan-Options: --force
| -rw-r--r-- | sci-biology/allpaths/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/allpaths/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/allpaths/allpaths-3.1.ebuild | 37 |
3 files changed, 47 insertions, 12 deletions
diff --git a/sci-biology/allpaths/ChangeLog b/sci-biology/allpaths/ChangeLog index 27d5a02e5708..521be3cf8b2a 100644 --- a/sci-biology/allpaths/ChangeLog +++ b/sci-biology/allpaths/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/allpaths # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.5 2010/01/03 14:08:56 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.6 2010/01/26 20:43:21 weaver Exp $ + +*allpaths-3.1 (26 Jan 2010) + + 26 Jan 2010; Andrey Kislyuk <weaver@gentoo.org> +allpaths-3.1.ebuild: + Version bump 03 Jan 2010; Pacho Ramos <pacho@gentoo.org> allpaths-2.0.ebuild: amd64 stable, bug 290927 diff --git a/sci-biology/allpaths/Manifest b/sci-biology/allpaths/Manifest index 03a8a2bf9cd5..92891efd0c7c 100644 --- a/sci-biology/allpaths/Manifest +++ b/sci-biology/allpaths/Manifest @@ -1,16 +1,9 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - AUX allpaths-2.0-gcc-x86-no-autocast.patch 1481 RMD160 06ce2c1fe608621527e3af1b0e01e5efa8b8329a SHA1 565c480b4d48400b42af72c61919b2b52fd7c829 SHA256 933377d2066d6dd3c8015ad005a12fd60cb1b8e90e7a966d9ff52b8fa30c2338 +DIST AllPathsV3_Manual_r1.0.docx 287870 RMD160 ca694ca153e81663629ebd9738befd866f150d06 SHA1 e42b925f2c6d21b28f88692d2bd5f44fbe046952 SHA256 497ce1649e627c542ac676cca2a6ab054347534b8521583795ae11d995b7680e DIST allpaths-2.0.manual.docx 287123 RMD160 41a3792e2bc135462c22ee15c992a606b928145a SHA1 307bb76b8acedff289511d10a3e8a3b65278a4a4 SHA256 f89d15f31d511d6bad587562fa2539c1d5a37a097e4c3f33bb5a00d47fba7e69 DIST allpaths-2.0.tar.gz 11211652 RMD160 cedffb29289c9229615c2ab72dca149722c4236a SHA1 a9cf07b59838aae714645f90cbf6f1407da69330 SHA256 16dce075e7b4ebd8924a79c765a7a7b87c01a68502e256ec200680ba42d95f02 +DIST allpaths-3.1.tgz 1482541 RMD160 9552ce07353110d4b585b951ba3525257b30ce99 SHA1 77f7f19a9b1df5da1d72051ae98cb2454d0a8803 SHA256 bbdc43f82586fc0b67d3a2584e245c452c377f8b532c81e9fe4e2c309ac1a46b EBUILD allpaths-2.0.ebuild 1182 RMD160 e2b93df7d63be93d6ff0e2476193e0214186a735 SHA1 db18f3cfa7c0a0d4c2478ec63aa89e47bed7ef17 SHA256 38d3f146740ba679abbd759f8f4122839a05d0edfe908c83e6be969128912df6 -MISC ChangeLog 823 RMD160 f927457526a137b8797c266f5249fa3ecd174a59 SHA1 8f26230e261f46f62a19b3f0b4d85f0b242641f8 SHA256 b6bcd1c029459fb8926e6ed58f3d9a315e47a11189cbdcf44b0b51d517c9729e +EBUILD allpaths-3.1.ebuild 1079 RMD160 207b16171cbce9d178dba67dfda4f6183e173775 SHA1 df99bf087f779689eab5f9ae94899a959155ab07 SHA256 b8cf4f7f609c6635ca43f207e800c8a1156fc8485f682281b6d6145317f9b93d +MISC ChangeLog 941 RMD160 e8b77b25cba161abf8b10a401676143863daf03e SHA1 ee2a3d49df54066b50029baa0a4acf3f5b1cbd62 SHA256 88d0120a1848328153fd867f052a2a53906355335fa1c229f0a6f17edb287a8b MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAktApQEACgkQCaWpQKGI+9QQrQCgg5r+8MBi1k1DCnU52OMw/1kv -Rq4AnAyC7NmDJlq4sqlxLVI+RUhRGrY+ -=WvrY ------END PGP SIGNATURE----- diff --git a/sci-biology/allpaths/allpaths-3.1.ebuild b/sci-biology/allpaths/allpaths-3.1.ebuild new file mode 100644 index 000000000000..31ac65d432a1 --- /dev/null +++ b/sci-biology/allpaths/allpaths-3.1.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild,v 1.1 2010/01/26 20:43:21 weaver Exp $ + +EAPI="2" + +inherit base + +DESCRIPTION="De novo assembly of whole-genome shotgun microreads" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz + ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/AllPathsV3_Manual_r1.0.docx" + +LICENSE="Whitehead-MIT" +SLOT="3" +IUSE="" +KEYWORDS="~amd64" + +DEPEND=">=sys-devel/gcc-4.3.2" +RDEPEND="" + +S="${WORKDIR}/AllPaths" + +src_compile() { + base_src_compile + emake install_scripts || die +} + +src_install() { + exeinto /usr/share/${P}/bin + find bin -type f -executable | xargs doexe || die + echo "PATH=\"/usr/share/${P}/bin\"" > "${S}/99${P}" + doenvd "${S}/99${P}" || die + dosym /usr/share/${P}/bin/RunAllPaths3G /usr/bin/RunAllPaths3G || die + insinto /usr/share/doc/${PF} + doins "${DISTDIR}/AllPathsV3_Manual_r1.0.docx" +} |