New Package-

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diff --git a/app-sci/bioperl-pipeline/ChangeLog b/app-sci/bioperl-pipeline/ChangeLog
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+# ChangeLog for app-sci/bioperl-pipeline
+# Copyright 2000-2003 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-pipeline/ChangeLog,v 1.1 2003/12/16 00:35:07 sediener Exp $
+
+*bioperl-pipeline-0.1 (15 Dec 2003)
+
+  15 Dec 2003; Stephen Diener <sediener@gentoo.org>
+  bioperl-pipeline-0.1.ebuild:
+  New ebuild -- initial release
+
diff --git a/app-sci/bioperl-pipeline/Manifest b/app-sci/bioperl-pipeline/Manifest
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index 000000000000..639146b0a9ea
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+++ b/app-sci/bioperl-pipeline/Manifest
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+MD5 5bd5f9a6fe13ddfede72c3b2f3bf4cf4 bioperl-pipeline-0.1.ebuild 1636
+MD5 d91ccb7494c6cf5f6f440e733da2c241 ChangeLog 385
+MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
+MD5 cea8881ae00a651493915c7732732233 files/digest-bioperl-pipeline-0.1 72
diff --git a/app-sci/bioperl-pipeline/bioperl-pipeline-0.1.ebuild b/app-sci/bioperl-pipeline/bioperl-pipeline-0.1.ebuild
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index 000000000000..a267c7ebacbf
--- /dev/null
+++ b/app-sci/bioperl-pipeline/bioperl-pipeline-0.1.ebuild
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+# Copyright 1999-2003 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-pipeline/bioperl-pipeline-0.1.ebuild,v 1.1 2003/12/16 00:35:07 sediener Exp $
+
+inherit perl-module
+CATEGORY="app-sci"
+
+DESCRIPTION="Collection of tools for bioinformatics, genomics and life science research : Biopipe "
+HOMEPAGE="http://www.biopipe.org/"
+SRC_URI="mirror://gentoo/$P.tar.gz"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+RDEPEND="
+	dev-db/mysql
+	>=app-sci/bioperl-1.2.3
+	>=app-sci/bioperl-run-1.2.2
+	dev-perl/XML-SimpleObject
+	dev-perl/XML-Parser
+	dev-perl/Data-ShowTable"
+
+DEPEND="${RDEPEND}"
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+}
+
+src_compile() {
+	# there's a test to run for BioGFFDB if using mysql
+	perl-module_src_compile || die "compile failed"
+	# make test
+	##	perl-module_src_test || die "src test failed"
+	# tests will fail unless mysq root user has no password
+}
+
+src_install() {
+	mydoc="AUTHORS README LICENSE INSTALL FAQ database_schema.doc database_tables.txt"
+	perl-module_src_install
+
+	# bioperl scripts and examples
+	einfo "Adding bioperl-pipeline scripts, sql and xml directories to /usr/share/${PF}..."
+	dodir /usr/share/${PF}/scripts
+	cd ${S}/scripts/
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
+	dodir /usr/share/${PF}/sql
+	cd ${S}/sql/
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/sql; tar xf -)
+	dodir /usr/share/${PF}/xml
+	cd ${S}/xml/
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/xml; tar xf -)
+	dodir /usr/share/doc/${PF}/
+	cd ${S}/doc/
+	tar cf - ./ | ( cd ${D}/usr/share/doc/${PF}; tar xf -)
+	cd ${S}
+
+}
diff --git a/app-sci/bioperl-pipeline/files/digest-bioperl-pipeline-0.1 b/app-sci/bioperl-pipeline/files/digest-bioperl-pipeline-0.1
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index 000000000000..a489d75fab99
--- /dev/null
+++ b/app-sci/bioperl-pipeline/files/digest-bioperl-pipeline-0.1
@@ -0,0 +1 @@
+MD5 91cd12769a4e22889a2c508c290a8965 bioperl-pipeline-0.1.tar.gz 633893
diff --git a/app-sci/bioperl-pipeline/metadata.xml b/app-sci/bioperl-pipeline/metadata.xml
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index 000000000000..8a4bcd47220d
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+++ b/app-sci/bioperl-pipeline/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer><email>sediener@gentoo.org</email></maintainer>
+</pkgmetadata>