bug 11498

3 files changed, 69 insertions, 0 deletions

diff --git a/app-sci/bioperl/ChangeLog b/app-sci/bioperl/ChangeLog
new file mode 100644
index 000000000000..6e4a747de437
--- /dev/null
+++ b/app-sci/bioperl/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for app-sci/bioperl
+# Copyright 2002 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl/ChangeLog,v 1.1 2002/12/22 16:04:07 mcummings Exp $
+
+*bioperl-1.0.2 (21 Dec 2002)
+
+  21 Dec 2002; Michael Cummings <mcummings@gentoo.org>
+  bioperl-1.0.2.ebuild:
+
+  Initial import.  Ebuild submitted by Gontran Zepeda <gontran@gontran.net>
+  Bug 11498
diff --git a/app-sci/bioperl/bioperl-1.0.2.ebuild b/app-sci/bioperl/bioperl-1.0.2.ebuild
new file mode 100644
index 000000000000..41d086e2fb75
--- /dev/null
+++ b/app-sci/bioperl/bioperl-1.0.2.ebuild
@@ -0,0 +1,57 @@
+# Copyright 2002 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License, v2 or later
+# $Header $
+
+IUSE="mysql gd"
+
+inherit perl-module
+
+S=${WORKDIR}/${P}
+CATEGORY="app-sci"
+DESCRIPTION="The Bioperl Project is a collection of tools for bioinformatics, genomics and life science research."
+SRC_URI="http://bioperl.org/DIST/${P}.tar.gz"
+HOMEPAGE="http://www.bioperl.org"
+
+LICENSE="Artistic | GPL-2"
+KEYWORDS="~x86 ~ppc ~sparc ~alpha"
+
+DEPEND="dev-perl/File-Temp
+	dev-perl/HTML-Parser
+	dev-perl/IO-String
+	dev-perl/IO-stringy
+	dev-perl/SOAP-Lite
+	dev-perl/Storable
+	dev-perl/XML-DOM
+	dev-perl/XML-Parser
+	dev-perl/XML-Writer
+	dev-perl/XML-Twig
+	dev-perl/libxml-perl
+	dev-perl/libwww-perl
+	dev-perl/Text-Shellwords
+	gd? ( >=dev-perl/GD-1.32-r1 )
+	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
+
+SLOT="0"
+
+src_compile() {
+	# there's a test to run for BioGFFDB if using mysql
+	# note: these echo's are for the default values for testing. Not that we're
+	# testing.
+	use mysql && (
+		echo y  
+		echo test
+		echo localhost
+		echo undef
+		echo undef
+		) | perl-module_src_compile || perl-module_src_compile || die "compile failed"
+
+	# Sadly, it's not advisable to run make test for this installation, as the
+	# tests are used by the bioperl developers as a sort of todo list. :)  IOW,
+	# it's OK if some fail.
+	#perl-module_src_test || die "test failed"
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}
diff --git a/app-sci/bioperl/files/digest-bioperl-1.0.2 b/app-sci/bioperl/files/digest-bioperl-1.0.2
new file mode 100644
index 000000000000..226e52d402eb
--- /dev/null
+++ b/app-sci/bioperl/files/digest-bioperl-1.0.2
@@ -0,0 +1 @@
+MD5 1e4b14269a321aeb1d35d1bdb8c4d75e bioperl-1.0.2.tar.gz 2645781