Initial import for app-sci/prints

5 files changed, 81 insertions, 0 deletions

diff --git a/app-sci/prints/ChangeLog b/app-sci/prints/ChangeLog
new file mode 100644
index 000000000000..e08b59f6e602
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+++ b/app-sci/prints/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for app-sci/prints
+# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/ChangeLog,v 1.1 2004/06/25 03:34:12 ribosome Exp $
+
+*prints-37.0 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  prints-37.0.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54325
+
diff --git a/app-sci/prints/files/digest-prints-37.0 b/app-sci/prints/files/digest-prints-37.0
new file mode 100644
index 000000000000..660c4ee3c1ef
--- /dev/null
+++ b/app-sci/prints/files/digest-prints-37.0
@@ -0,0 +1,6 @@
+MD5 8d15b420f8fb946085364b95550557c9 newpr.lis.gz 1446
+MD5 0b250e6966d83573609d6afe3f6442ce prints37_0.all.fasta.Z 19434403
+MD5 750992359d84739bf9d08894271c34ad prints37_0.dat.gz 7145345
+MD5 4b25791302554f8ea87358156b2b6b89 prints37_0.lis.gz 30354
+MD5 72215bb4d79ba0e2503ecb6614f74834 prints37_0.nam.gz 584
+MD5 2472d9ba65b3bfc4cd054f18d5b26a67 prints37_0.vsn.gz 73
diff --git a/app-sci/prints/metadata.xml b/app-sci/prints/metadata.xml
new file mode 100644
index 000000000000..4d3ac3ee6b21
--- /dev/null
+++ b/app-sci/prints/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		A protein motif fingerprint database maintained at the University of
+		Manchester. A fingerprint is a group of conserved motifs used to
+		characterise a protein family; its diagnostic power is refined by
+		iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs
+		do not overlap, but are separated along a sequence, though they may be
+		contiguous in 3D-space. Fingerprints can encode protein folds and
+		functionalities more flexibly and powerfully than can single motifs,
+		full diagnostic potency deriving from the mutual context provided by
+		motif neighbours.
+	</longdescription>
+</pkgmetadata>
diff --git a/app-sci/prints/prints-37.0.ebuild b/app-sci/prints/prints-37.0.ebuild
new file mode 100644
index 000000000000..461328353dd9
--- /dev/null
+++ b/app-sci/prints/prints-37.0.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/prints-37.0.ebuild,v 1.1 2004/06/25 03:34:12 ribosome Exp $
+
+DESCRIPTION="A protein motif fingerprint database"
+HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz
+	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.all.fasta.Z
+	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.dat.gz
+	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.lis.gz
+	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.nam.gz
+	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.vsn.gz"
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="no-emboss no-rawdb"
+
+S=${WORKDIR}
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+		mkdir PRINTS
+		einfo "Indexing PRINTS for usage with EMBOSS."
+		EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \
+			"Indexing PRINTS failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis
+	fi
+	if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PRINTS
+		doins PRINTS/*
+	fi
+}
diff --git a/app-sci/prosite/Manifest b/app-sci/prosite/Manifest
new file mode 100644
index 000000000000..5a4ddcea894c
--- /dev/null
+++ b/app-sci/prosite/Manifest
@@ -0,0 +1,4 @@
+MD5 c3c532ef85f4907c38d40f425f3e3140 prosite-18.26.ebuild 1425
+MD5 db69308e5869d6521fd4b942f8dacd13 ChangeLog 455
+MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
+MD5 93e518c7b278bf20d3d76135c4f9fc25 files/digest-prosite-18.26 281