New upstream version

Package-Manager: portage-2.1.1

5 files changed, 60 insertions, 9 deletions

diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index c8f96f549f39..4203bf1ba903 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 2002-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.9 2006/01/19 19:52:14 george Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.10 2006/09/12 04:48:13 ribosome Exp $
+
+*biopython-1.42 (12 Sep 2006)
+
+  12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +biopython-1.42.ebuild:
+  New upstream version.
 
   19 Jan 2006; George Shapovalov <george@gentoo.org> +biopython-1.41.ebuild:
   new version, cleaned up install
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 6d7d80c90dea..cd8d220aeb80 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,5 +1,6 @@
 DIST biopython-1.40b.tar.gz 2821213
-DIST biopython-1.41.tar.gz 3807547
+DIST biopython-1.41.tar.gz 3807547 RMD160 f7ad5e170a6a3740fabe3828715b83fc4c3e15ae SHA1 a7a3bac606acc5b5b70a565402f9c281209ba8b9 SHA256 15b708b7635fd993aad3c53fd4cfc28601da6d4332b027d09899f1cb5178cef9
+DIST biopython-1.42.tar.gz 3933507 RMD160 9f3027fb1b3326885376eaf7a5a714a26e0bc333 SHA1 107321d782b0a00bc3c302cd8c7e4b82c013d6d7 SHA256 ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58
 EBUILD biopython-1.40b.ebuild 796 RMD160 68c9e75a6705159d83dd9304dfd204637f92d743 SHA1 68b14a0b4dcb181f7f8f16853483b22fbb851779 SHA256 6cdf5291dfc0f42f8ff4bdc7acd47c0aa6729aadc34548fa9b122b59fb7d559a
 MD5 ca3f484c64cdb795e9d87f40d09f02bd biopython-1.40b.ebuild 796
 RMD160 68c9e75a6705159d83dd9304dfd204637f92d743 biopython-1.40b.ebuild 796
@@ -8,10 +9,14 @@ EBUILD biopython-1.41.ebuild 848 RMD160 e16a7574c7d746696a59c634eea9978712149048
 MD5 0e8a0e66a4e14146021c927ecaf2949a biopython-1.41.ebuild 848
 RMD160 e16a7574c7d746696a59c634eea9978712149048 biopython-1.41.ebuild 848
 SHA256 ef21c75a19531535af6b98a01a0c308b966d61781e98566216e0132c87d3ba1d biopython-1.41.ebuild 848
-MISC ChangeLog 3081 RMD160 e261aaf0e878fac46bafee3b32ce7105f9e730de SHA1 4fd38055ca38eb6e7c48a61e48c37e299db5ef87 SHA256 296fdb5614d8124bf67b65d520e617b0b8a66b053b49168bcd901219fcb08c4e
-MD5 4a2e7e473c7ff9107de6dd96e00443d4 ChangeLog 3081
-RMD160 e261aaf0e878fac46bafee3b32ce7105f9e730de ChangeLog 3081
-SHA256 296fdb5614d8124bf67b65d520e617b0b8a66b053b49168bcd901219fcb08c4e ChangeLog 3081
+EBUILD biopython-1.42.ebuild 849 RMD160 6ef0a2c798f6d44a01fe434142473efe2d126dd6 SHA1 7f92cc95440c1eda750f808a41eeb8d40d1a9448 SHA256 54a10b9f02724b9c1993f8106b699dc725c2576d3050838ddfdf32184928c1d8
+MD5 e7e2605d12b7fb4fd8e755ecdf07f46b biopython-1.42.ebuild 849
+RMD160 6ef0a2c798f6d44a01fe434142473efe2d126dd6 biopython-1.42.ebuild 849
+SHA256 54a10b9f02724b9c1993f8106b699dc725c2576d3050838ddfdf32184928c1d8 biopython-1.42.ebuild 849
+MISC ChangeLog 3217 RMD160 d37fbcb1ed3ab8284e693fd1cd5541dc50b3b5f8 SHA1 9414d93b31127844426e0b34a7cf5902c40eada3 SHA256 90b13dc0fa3dbd2ba51bfee135a13b6d474ae5995319ab2f82540c1198f5be1c
+MD5 deace38b6b73ad2374fe73f67ff4843c ChangeLog 3217
+RMD160 d37fbcb1ed3ab8284e693fd1cd5541dc50b3b5f8 ChangeLog 3217
+SHA256 90b13dc0fa3dbd2ba51bfee135a13b6d474ae5995319ab2f82540c1198f5be1c ChangeLog 3217
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
 MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
@@ -19,6 +24,9 @@ SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata
 MD5 d246b958fac8cca5b9ea50119eedbc50 files/digest-biopython-1.40b 68
 RMD160 9970cbebd48125e743433adfb99e522787529673 files/digest-biopython-1.40b 68
 SHA256 14af6ac9af1b7eba7436972f4ebbfba7b189c42101b7519bc9f8b36253144e11 files/digest-biopython-1.40b 68
-MD5 93cd219847a378a0505a2ea5cb150d3b files/digest-biopython-1.41 67
-RMD160 4b44bf6811065afcd9089ae10943b640ab134b25 files/digest-biopython-1.41 67
-SHA256 3bf80f3e8a6c696c6f4b98c28ed921a1096f14247017f99739dc53bd4331a2fb files/digest-biopython-1.41 67
+MD5 e286e0ebc188cb905a2e7252063958f7 files/digest-biopython-1.41 247
+RMD160 df7aff8ded6c1e849c27c43f3f1f64750393d0a5 files/digest-biopython-1.41 247
+SHA256 64bf9dd5e9bb2b8277fc800a610bf15214d23cbaceb1bdb6876aed0c2a65b77c files/digest-biopython-1.41 247
+MD5 849ac28783dbe22d1aa863f1bddbc239 files/digest-biopython-1.42 247
+RMD160 530d31339488bdc57982b5d99b88632530e184d5 files/digest-biopython-1.42 247
+SHA256 ecaf906566a4d758f5ac3f8ffeecca195eae920c614579c2d64ecb307ce2c7dc files/digest-biopython-1.42 247
diff --git a/sci-biology/biopython/biopython-1.42.ebuild b/sci-biology/biopython/biopython-1.42.ebuild
new file mode 100644
index 000000000000..eed550fd6d1f
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.42.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.42.ebuild,v 1.1 2006/09/12 04:48:13 ribosome Exp $
+
+inherit distutils
+
+IUSE=""
+
+DESCRIPTION="Biopython - Python modules for computational molecular biology"
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.2
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="~alpha ~ppc ~sparc ~x86 ~amd64"
+
+src_compile() {
+	distutils_src_compile
+}
+
+src_install() {
+	DOCS="Doc/*.txt Doc/*.tex Doc/install/*.txt"
+	distutils_src_install
+
+	dohtml Doc/install/*.html
+	dohtml Doc/*.html
+	cp -r Doc/examples/ Doc/*.pdf ${D}/usr/share/doc/${PF}/
+}
diff --git a/sci-biology/biopython/files/digest-biopython-1.41 b/sci-biology/biopython/files/digest-biopython-1.41
index 4ffc5b406ed1..be54e3d7b484 100644
--- a/sci-biology/biopython/files/digest-biopython-1.41
+++ b/sci-biology/biopython/files/digest-biopython-1.41
@@ -1 +1,3 @@
 MD5 03f8efc258fb49b07d1a2b642fa8362e biopython-1.41.tar.gz 3807547
+RMD160 f7ad5e170a6a3740fabe3828715b83fc4c3e15ae biopython-1.41.tar.gz 3807547
+SHA256 15b708b7635fd993aad3c53fd4cfc28601da6d4332b027d09899f1cb5178cef9 biopython-1.41.tar.gz 3807547
diff --git a/sci-biology/biopython/files/digest-biopython-1.42 b/sci-biology/biopython/files/digest-biopython-1.42
new file mode 100644
index 000000000000..4f40137b0a44
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.42
@@ -0,0 +1,3 @@
+MD5 6d9bf58d0fcfa5a3b2053ad419069ff3 biopython-1.42.tar.gz 3933507
+RMD160 9f3027fb1b3326885376eaf7a5a714a26e0bc333 biopython-1.42.tar.gz 3933507
+SHA256 ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58 biopython-1.42.tar.gz 3933507