diff options
| author |   Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-22 19:30:32 +0000 |
|---|---|---|
| committer | Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-22 19:30:32 +0000 |
| commit | 2a75b9703d86d70a7a8a0cc9bd894b92a45488c6 (patch) | |
| tree | 15360ad1f59bd60e39e42a6ced1714bfe4d0d1d6 /sci-biology/qrna | |
| parent | Version bump. bug #212010 (diff) | |
| download | historical-2a75b9703d86d70a7a8a0cc9bd894b92a45488c6.tar.gz historical-2a75b9703d86d70a7a8a0cc9bd894b92a45488c6.tar.bz2 historical-2a75b9703d86d70a7a8a0cc9bd894b92a45488c6.zip | |
Rely on squid from hmmer. Fixes bug #208462
Package-Manager: portage-2.2_rc1/cvs/Linux 2.6.25-gentoo-r5 x86_64
Diffstat (limited to 'sci-biology/qrna')
| -rw-r--r-- | sci-biology/qrna/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/qrna/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/qrna/qrna-2.0.3c.ebuild | 20 |
3 files changed, 16 insertions, 16 deletions
diff --git a/sci-biology/qrna/ChangeLog b/sci-biology/qrna/ChangeLog index 89cde4ceae81..8a6d952d00e8 100644 --- a/sci-biology/qrna/ChangeLog +++ b/sci-biology/qrna/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/qrna -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.16 2007/05/22 01:08:10 ribosome Exp $ +# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.17 2008/06/22 19:30:32 je_fro Exp $ + + 22 Jun 2008; Jeff Gardner <je_fro@gentoo.org> qrna-2.0.3c.ebuild: + No longer compiling files in squid02 because they are newer in hmmer and + we avoid collisions. qrna now depends on hmmer. See bug #208462. 22 May 2007; Olivier Fisette <ribosome@gentoo.org> qrna-2.0.3c.ebuild: Updated home page. diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest index b6ddc609c454..47e5ab9f42c3 100644 --- a/sci-biology/qrna/Manifest +++ b/sci-biology/qrna/Manifest @@ -1,5 +1,5 @@ AUX 26qrna 30 RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 SHA1 34b74c24f599e5387dd788ec2df1752b043b7b9a SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7 DIST qrna-2.0.3c.tar.bz2 6423705 RMD160 df0fe89e45d64cf6f205dd3e524a9a27d6c14961 SHA1 1c577a495d538eb50531c4672decae85649ac066 SHA256 fc88b58dddab26f20477a50340453e9d360ea34956ba526f7db6959283399b1c -EBUILD qrna-2.0.3c.ebuild 1381 RMD160 bf5831d0d3eac8181df97ba258234107bbb915a6 SHA1 370915fa1fa868d86be5288226dba1854135b81e SHA256 a14e2d91556c6e9f94eb5fd93528c3eba97d7b9fb9738bbb14d9719bbec8e608 -MISC ChangeLog 2407 RMD160 3a9b8fb4c8901ed632d89fa009e2e0034761c063 SHA1 f822f9e6bd40a2fd81776807f090121538899b0b SHA256 3f7c701624eaa4e29a9e62405240bb6637408eadd453c7ca857d238ce22f55c0 +EBUILD qrna-2.0.3c.ebuild 1109 RMD160 6aa62f8b858c806160bf89a14ede6d2b5aa24d8e SHA1 44ff167b0abba938498287ed8fb8ac187f48d36d SHA256 6271bce59b5ca346c59a86bbc45c9181c88f77fed4708c6578dac6a473be4f68 +MISC ChangeLog 2616 RMD160 a77716a8e6f733df5eff23ea7b22de1771753174 SHA1 2e026a37936c9db82cc040a2e7167fe7533f1335 SHA256 f22b5dd7edccbfd304170a43e0152d5ae54eec7ae5ba200339e22ff245833587 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 diff --git a/sci-biology/qrna/qrna-2.0.3c.ebuild b/sci-biology/qrna/qrna-2.0.3c.ebuild index dc984942a175..5a8db6f36c96 100644 --- a/sci-biology/qrna/qrna-2.0.3c.ebuild +++ b/sci-biology/qrna/qrna-2.0.3c.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2007 Gentoo Foundation +# Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.9 2007/05/22 01:08:10 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.10 2008/06/22 19:30:32 je_fro Exp $ inherit toolchain-funcs @@ -10,22 +10,20 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2" LICENSE="GPL-2" SLOT="0" -KEYWORDS="amd64 ppc x86" +KEYWORDS="amd64 ~ppc x86" IUSE="" -DEPEND="dev-lang/perl" +DEPEND="dev-lang/perl + sci-biology/hmmer" src_compile () { sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \ -i src/Makefile squid/Makefile - sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ - -e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \ - -i squid02/Makefile + cd "${S}"/squid emake || die - cd "${S}"/squid02 - emake || die + cd "${S}"/src emake || die } @@ -33,9 +31,7 @@ src_compile () { src_install () { cd "${S}"/src dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle || die - cd "${S}"/squid02 - dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \ - sfetch shuffle sindex sreformat translate weight || die + cd "${S}" dobin scripts/* || die |