New upstream version

Package-Manager: portage-2.1-r2

4 files changed, 63 insertions, 5 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 3967977e7bb6..5121c66dce23 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.67 2006/07/12 01:22:20 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.68 2006/08/17 03:00:14 ribosome Exp $
+
+*rebase-608 (17 Aug 2006)
+
+  17 Aug 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-608.ebuild:
+  New upstream version.
 
 *rebase-607 (12 Jul 2006)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 0484483128ba..e6841f4872ac 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,6 +3,7 @@ DIST rebase-603.tar.bz2 182746
 DIST rebase-604.tar.bz2 182610
 DIST rebase-606.tar.bz2 183617 RMD160 7dea5a428a797b359c5bd34c698f093927a94be0 SHA1 36dbf47c2647b1cf676ce55ed561db1e439e6e6e SHA256 13ccca9937b7053ddda2f1cdeac88cc39eb5938540507089ff249d30f403244e
 DIST rebase-607.tar.bz2 183819 RMD160 5c759b198c25e279d628897129e28b32081f9dbd SHA1 c6b59fac35e7451be2a6bee1029b406ef97d15a0 SHA256 84f8a44535f566629f2d4ce3af92bb369e51a42550a923e732d1efa54e1f4f67
+DIST rebase-608.tar.bz2 184005 RMD160 1bc2d4f3af896ba05119a38fa99d40a9634419e6 SHA1 d1b8c22770055389b4f1fbb0ec81f2c79b30f28d SHA256 4ed73c49f51972787cac53380fbc2e82aae3e8eab14799897a4f49a8a93192c0
 EBUILD rebase-601-r1.ebuild 1355 RMD160 4c82189c82c7bdd8ea3c9cb88f66dc40b9a665f6 SHA1 2d7ad73f5c8017eaf47a413692170ea39a06d2f4 SHA256 d045583304fc5bb4894e817d40e70702d62d6464a7b189a3fd1b2bafbd0f374e
 MD5 e21bd3a6974c61c4c0328f66719200a4 rebase-601-r1.ebuild 1355
 RMD160 4c82189c82c7bdd8ea3c9cb88f66dc40b9a665f6 rebase-601-r1.ebuild 1355
@@ -23,10 +24,14 @@ EBUILD rebase-607.ebuild 1360 RMD160 21fe251ac0ddde1f43e2d20a36df8b80832b7af1 SH
 MD5 1ec6e44f6d9994adb733d0ac091109e3 rebase-607.ebuild 1360
 RMD160 21fe251ac0ddde1f43e2d20a36df8b80832b7af1 rebase-607.ebuild 1360
 SHA256 2783c2b981ceb7d9880c115902f58c02599f82d75c80d7c7761f321c360b53fd rebase-607.ebuild 1360
-MISC ChangeLog 9119 RMD160 d436432268486a1f71ee888d6f3a36aee30991dc SHA1 743f2c6857462b82d47bfb7f6e869d4c34fe7c90 SHA256 0e8ffd288585a7c30657b72cdd5f02f5820bbe667f0636729240c3b7d8d71a7d
-MD5 8badd8213cac923009d99553f4a9c81d ChangeLog 9119
-RMD160 d436432268486a1f71ee888d6f3a36aee30991dc ChangeLog 9119
-SHA256 0e8ffd288585a7c30657b72cdd5f02f5820bbe667f0636729240c3b7d8d71a7d ChangeLog 9119
+EBUILD rebase-608.ebuild 1344 RMD160 9735401ba728ec001776cfc3ddefb6b0dacb3ef5 SHA1 68dcdffeb2ace3f3d5ba0b6ea652d2338e65d280 SHA256 1e466b2ea8ae0da83aa1ca73024e49438af3719b3c6d9b36b04dba00c5bb6b9f
+MD5 26ebe32f0442faf7959d8cc5df74c1d5 rebase-608.ebuild 1344
+RMD160 9735401ba728ec001776cfc3ddefb6b0dacb3ef5 rebase-608.ebuild 1344
+SHA256 1e466b2ea8ae0da83aa1ca73024e49438af3719b3c6d9b36b04dba00c5bb6b9f rebase-608.ebuild 1344
+MISC ChangeLog 9244 RMD160 0f645c7466fe120b5c6c7d8469296a5f53fbd053 SHA1 18ea2c39d7bbdde48d95366e20674f14ded7ce8a SHA256 75a0dc0f03d9ba9c6a21dae8185e9cd215c999e31a5adf808bc46b05d89bddd2
+MD5 7149bacdd818a2594465964cae4ce9c0 ChangeLog 9244
+RMD160 0f645c7466fe120b5c6c7d8469296a5f53fbd053 ChangeLog 9244
+SHA256 75a0dc0f03d9ba9c6a21dae8185e9cd215c999e31a5adf808bc46b05d89bddd2 ChangeLog 9244
 MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
 MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
@@ -46,3 +51,6 @@ SHA256 b8daf99ca7504c3cc4ae2392ec08e7fc7d9974fdff0fc86b57d3678a3e3350e8 files/di
 MD5 ca6506d9c7c8f661fcab90c01fe60221 files/digest-rebase-607 235
 RMD160 85a1efaeb55847d49a8f354bae3fd034cc327ae6 files/digest-rebase-607 235
 SHA256 91eb35cd817846354eac57774e13a42786e63f7e53642746fa6a45d57b36e4a9 files/digest-rebase-607 235
+MD5 76e809ff0ea737ddabcbab0ba28fdb2e files/digest-rebase-608 235
+RMD160 e8bf7950593fb89d5b41dfd20b3e5720f0e8b9f1 files/digest-rebase-608 235
+SHA256 32f260f2443e95af3dae0ffed023da9b539dedf1df5a35109256837d7e877c80 files/digest-rebase-608 235
diff --git a/sci-biology/rebase/files/digest-rebase-608 b/sci-biology/rebase/files/digest-rebase-608
new file mode 100644
index 000000000000..551b749a06eb
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-608
@@ -0,0 +1,3 @@
+MD5 1d84581da57e1b8ebd8081ee69d506b9 rebase-608.tar.bz2 184005
+RMD160 1bc2d4f3af896ba05119a38fa99d40a9634419e6 rebase-608.tar.bz2 184005
+SHA256 4ed73c49f51972787cac53380fbc2e82aae3e8eab14799897a4f49a8a93192c0 rebase-608.tar.bz2 184005
diff --git a/sci-biology/rebase/rebase-608.ebuild b/sci-biology/rebase/rebase-608.ebuild
new file mode 100644
index 000000000000..3d959728b6a8
--- /dev/null
+++ b/sci-biology/rebase/rebase-608.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-608.ebuild,v 1.1 2006/08/17 03:00:14 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing ${PN} failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}