Fixed ppc64 lop patch

Package-Manager: portage-2.1-r1

2 files changed, 20 insertions, 35 deletions

diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index bd04fee9cde0..359ace653fa0 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -2,14 +2,14 @@ AUX 21ncbi-r1 232 RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b SHA1 5674f379f
 MD5 a5f54430f6f7422d75320e91068cae0b files/21ncbi-r1 232
 RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b files/21ncbi-r1 232
 SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411 files/21ncbi-r1 232
-AUX ncbi-tools-20050605-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 SHA1 be28d340be72b9840342b407d95dc2a558e39de9 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc
-MD5 6b62beda180ee6d7d4d4a52507acc3ff files/ncbi-tools-20050605-lop.patch 701
-RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 files/ncbi-tools-20050605-lop.patch 701
-SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc files/ncbi-tools-20050605-lop.patch 701
 AUX ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 SHA1 ae22c77cfcd7d416a89ea3fe1e0331264473669d SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed
 MD5 b89cb833887b3e3efda83d074b4b8edb files/ncbi-tools-asn2all.patch 1190
 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 files/ncbi-tools-asn2all.patch 1190
 SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed files/ncbi-tools-asn2all.patch 1190
+AUX ncbi-tools-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 SHA1 be28d340be72b9840342b407d95dc2a558e39de9 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc
+MD5 6b62beda180ee6d7d4d4a52507acc3ff files/ncbi-tools-lop.patch 701
+RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 files/ncbi-tools-lop.patch 701
+SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc files/ncbi-tools-lop.patch 701
 AUX ncbirc 33 RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 SHA1 eb14976d464f4fa0e14085c8dd58886b0c684a56 SHA256 8687909c83658049cbad656b6d99c8e6143365286e2fa981fbdddc87b178ab8e
 MD5 23986a001c85eb8c2c319aacfa9cb40c files/ncbirc 33
 RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 files/ncbirc 33
@@ -19,22 +19,22 @@ DIST mpiblast-20060625.tar.gz 165096 RMD160 22a9bda3ea63076c1411f8c361c7bbf84213
 DIST ncbi-tools-20050605.tar.gz 14458684
 DIST ncbi-tools-20060507.tar.gz 15396356 RMD160 56114d25ace0338d1ef5c8c2a3cc36ce740a12e3 SHA1 64269236b09fba29d4afe0cd8a3ac6a47fee5218 SHA256 b3cac971d552b2ad86ee7d82e77e6a425b98b33a7b6f1c77062aff133e34d129
 DIST ncbi-tools-sdk-doc.tar.bz2 263568 RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b SHA1 6fd259b1fc75684db43bd817fc4720e92f56e81c SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2
-EBUILD ncbi-tools-20050605-r2.ebuild 7017 RMD160 4e187c4974e8929e537ff490fec06a1e38bee19f SHA1 ceb49fdb419868135ff6b8d35d18b332f9b22a4c SHA256 ffa14e8c073e7672becbaceda5d8a50f7966e6a8571b020835d6163cbc73a462
-MD5 6ee259b32ffdc366ddba50f20e7e76b7 ncbi-tools-20050605-r2.ebuild 7017
-RMD160 4e187c4974e8929e537ff490fec06a1e38bee19f ncbi-tools-20050605-r2.ebuild 7017
-SHA256 ffa14e8c073e7672becbaceda5d8a50f7966e6a8571b020835d6163cbc73a462 ncbi-tools-20050605-r2.ebuild 7017
-EBUILD ncbi-tools-20050605.ebuild 5677 RMD160 e3a90edec7d05b46b213885d67182f3b067f9877 SHA1 b827765df560fbd8be08040c731bf34cabe6cbaf SHA256 d35149417de2deb43789a8342667c5a10ccd950c23b051c7d202ce9bc4ff289a
-MD5 c3c0d582d093e9a1b2df2788859a647c ncbi-tools-20050605.ebuild 5677
-RMD160 e3a90edec7d05b46b213885d67182f3b067f9877 ncbi-tools-20050605.ebuild 5677
-SHA256 d35149417de2deb43789a8342667c5a10ccd950c23b051c7d202ce9bc4ff289a ncbi-tools-20050605.ebuild 5677
-EBUILD ncbi-tools-20060507.ebuild 6415 RMD160 5e7a3a8cb0df31a03536ff89f6fdc49a3d877e6e SHA1 88a9becc584222144540d5be8574b76662b4275a SHA256 d4f7c68e7fe50b61743a636613bd0645befac4f469c3db7e2472dd0ce71c7521
-MD5 e48d407bf265cc74b4a3c1acb686e238 ncbi-tools-20060507.ebuild 6415
-RMD160 5e7a3a8cb0df31a03536ff89f6fdc49a3d877e6e ncbi-tools-20060507.ebuild 6415
-SHA256 d4f7c68e7fe50b61743a636613bd0645befac4f469c3db7e2472dd0ce71c7521 ncbi-tools-20060507.ebuild 6415
-MISC ChangeLog 9928 RMD160 a0271b128d970081d1f592fc4c4b97fbba35d9c5 SHA1 432805501efd5fe5bc9352152828ac0d5e42f556 SHA256 b94898cd27477ebd2d3dc841f2540cac6f40c054b5e3f1e237adaa24a2b3b1af
-MD5 dc346b25ff97f1c65b092d8d4dded2d5 ChangeLog 9928
-RMD160 a0271b128d970081d1f592fc4c4b97fbba35d9c5 ChangeLog 9928
-SHA256 b94898cd27477ebd2d3dc841f2540cac6f40c054b5e3f1e237adaa24a2b3b1af ChangeLog 9928
+EBUILD ncbi-tools-20050605-r2.ebuild 7018 RMD160 6e83162725690a5a8ac83c5a71724a0d2ed7f57d SHA1 7d1dfea346a2316e446e62e2ad5a683ced4804a3 SHA256 591058b5c132b4f2ea8743fbbbc4d14eb625de41ee9fbf3c32ce7f8e9d17bc39
+MD5 a88dd4f147afb360922183afc7cf551a ncbi-tools-20050605-r2.ebuild 7018
+RMD160 6e83162725690a5a8ac83c5a71724a0d2ed7f57d ncbi-tools-20050605-r2.ebuild 7018
+SHA256 591058b5c132b4f2ea8743fbbbc4d14eb625de41ee9fbf3c32ce7f8e9d17bc39 ncbi-tools-20050605-r2.ebuild 7018
+EBUILD ncbi-tools-20050605.ebuild 5677 RMD160 7d9b13a8bd8b5d3e40622e4344a11ba912508752 SHA1 cae206e615b5049f9f1fe27ab0004c2914d0a4ea SHA256 952d387795fcf43414f535c61b55b4b7562bf55b946d8ea6c6116ce9b66adfdb
+MD5 6648e18a4a15be92d6f878c236add749 ncbi-tools-20050605.ebuild 5677
+RMD160 7d9b13a8bd8b5d3e40622e4344a11ba912508752 ncbi-tools-20050605.ebuild 5677
+SHA256 952d387795fcf43414f535c61b55b4b7562bf55b946d8ea6c6116ce9b66adfdb ncbi-tools-20050605.ebuild 5677
+EBUILD ncbi-tools-20060507.ebuild 6416 RMD160 df13211cdefeba2340e428030dcc9372c4ddc6bb SHA1 7d3038d353a5f4a36f95c57dac7918edf360f4ed SHA256 5fefbfab796b77dbadd66357406d5ec19b67c242fab907e7400a3becabbc21c4
+MD5 fcdfef8d28b38b823c0f29ebf209b683 ncbi-tools-20060507.ebuild 6416
+RMD160 df13211cdefeba2340e428030dcc9372c4ddc6bb ncbi-tools-20060507.ebuild 6416
+SHA256 5fefbfab796b77dbadd66357406d5ec19b67c242fab907e7400a3becabbc21c4 ncbi-tools-20060507.ebuild 6416
+MISC ChangeLog 10180 RMD160 f4a516010520f1c40eb60cd0c86431c0a1b18f00 SHA1 a67e6944029b1fcc5e928b25a250701b2151ac66 SHA256 297a7b50d6b5694ff0679ae7a76027a496fa9ba2b76baca77c8f24177b41633f
+MD5 c370617abe30765a386785c9717fd965 ChangeLog 10180
+RMD160 f4a516010520f1c40eb60cd0c86431c0a1b18f00 ChangeLog 10180
+SHA256 297a7b50d6b5694ff0679ae7a76027a496fa9ba2b76baca77c8f24177b41633f ChangeLog 10180
 MISC metadata.xml 254 RMD160 f02847af149737bf8044b3de239c5bd4b42abca5 SHA1 39b2c27b727742ea30045ab645b5a3ef433247a6 SHA256 3392ded43ad861595a8cfeb0441342fdbcd6e731b4793c3e8a22ff927ce09f27
 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
 RMD160 f02847af149737bf8044b3de239c5bd4b42abca5 metadata.xml 254
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch b/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch
deleted file mode 100644
index 867b203aecb1..000000000000
--- a/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- platform/linux-power.ncbi.mk.bak	2005-08-04 22:45:13.000000000 -0500
-+++ platform/linux-power.ncbi.mk	2005-08-04 22:45:35.000000000 -0500
-@@ -9,10 +9,10 @@
- #it appears the flags above do not work anymore with newer libc,
- #the new flags should work. Dima. 08/23/01
- NCBI_AR=ar
--NCBI_CC = xlc_r -w -qcpluscmt -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
-+NCBI_CC = gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
- NCBI_CFLAGS1 = -c 
- NCBI_LDFLAGS1 = -O3 -D_LARGE_FILES 
--NCBI_OPTFLAG = -O3 -qmaxmem=-1 -D_LARGE_FILE
-+NCBI_OPTFLAG = -O3  -D_LARGE_FILE
- NCBI_BIN_MASTER = /vol/stcfs/rchen/LoP/ncbi/bin
- NCBI_BIN_COPY = /vol/stcfs/rchen/LoP/ncbi/bin
- NCBI_INCDIR = /vol/stcfs/rchen/LoP/ncbi/include