Changed versioning scheme.

11 files changed, 29 insertions, 21 deletions

diff --git a/sci-biology/njplot/ChangeLog b/sci-biology/njplot/ChangeLog
index d22f9f4f150b..38776054b8e4 100644
--- a/sci-biology/njplot/ChangeLog
+++ b/sci-biology/njplot/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/njplot-unrooted
 # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.1 2005/01/09 18:30:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.2 2005/01/09 18:34:14 ribosome Exp $
+
+*njplot-20050109 (09 Jan 2005)
+
+  09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> -njplot-1.ebuild,
+  +njplot-20050109.ebuild:
+  Changed versioning scheme. (Upstream does not use version numbers.)
 
 *njplot-1 (09 Jan 2005)
 
diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest
index 2277f1c36b39..8c4455c05075 100644
--- a/sci-biology/njplot/Manifest
+++ b/sci-biology/njplot/Manifest
@@ -1,4 +1,6 @@
+MD5 f028dc57e2a99cb40722fae5412bd761 njplot-20050109.ebuild 839
 MD5 0707bd52088bd9183070446128bda71f njplot-1.ebuild 805
 MD5 d81ad28c7a708f0001c2f2b72c661215 ChangeLog 749
 MD5 a1727bd238aff0cb1debdf9b11b21b5e metadata.xml 609
+MD5 50d788774b229a8b182ad47e44b7123d files/digest-njplot-20050109 67
 MD5 72fe56f3a4074cf7324d469c568a242a files/digest-njplot-1 69
diff --git a/sci-biology/njplot/files/digest-njplot-1 b/sci-biology/njplot/files/digest-njplot-1
deleted file mode 100644
index 5d1ded51f641..000000000000
--- a/sci-biology/njplot/files/digest-njplot-1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 bd8228dbc78ab5858154063517d4b6e1 njplot-unrooted-1.tar.bz2 34352
diff --git a/sci-biology/njplot/files/digest-njplot-20050109 b/sci-biology/njplot/files/digest-njplot-20050109
new file mode 100644
index 000000000000..076d74c0d1cc
--- /dev/null
+++ b/sci-biology/njplot/files/digest-njplot-20050109
@@ -0,0 +1 @@
+MD5 90e5a9285c976929aaa8a8b04d73d806 njplot-20050109.tar.bz2 36953
diff --git a/sci-biology/njplot/njplot-1.ebuild b/sci-biology/njplot/njplot-20050109.ebuild
index 7b6583018a1e..d42656d39f99 100644
--- a/sci-biology/njplot/njplot-1.ebuild
+++ b/sci-biology/njplot/njplot-20050109.ebuild
@@ -1,10 +1,10 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-1.ebuild,v 1.1 2005/01/09 18:30:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-20050109.ebuild,v 1.1 2005/01/09 18:34:14 ribosome Exp $
 
 DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting"
 HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html"
-SRC_URI="mirror://gentoo/njplot-unrooted-1.tar.bz2"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
 LICENSE="public-domain"
 
 SLOT="0"
@@ -21,15 +21,13 @@ src_unpack() {
 }
 
 src_compile() {
-	make -e || die
+	make all -e || die
 }
 
 src_install() {
-	dobin newicktops njplot unrooted
-
+	dobin add_root newicktops newicktotxt njplot unrooted
 	insinto /usr/share/doc/${PF}
 	doins njplot.help
-
 	insinto /usr/share/${PN}
 	doins test.ph
 }
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index ad465d87ae94..e108db353718 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/seaview
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.2 2004/12/24 02:35:40 swegener Exp $
+# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.3 2005/01/09 18:39:11 ribosome Exp $
+
+*seaview-20041220 (09 Jan 2005)
+
+  09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> -files/29seaview,
+  -seaview-1-r1.ebuild, +seaview-20041220.ebuild:
+  Changed versioning scheme. (Upstream does not use version numbers.)
 
 *seaview-1-r1 (23 Dec 2004)
 
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 04fe1cc30ebb..5b0e353906e8 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,5 +1,7 @@
+MD5 fcf3eb1d4e283ed8c940df12b4dbbb99 seaview-20041220.ebuild 867
 MD5 f804e9a43d2b50d88d7d68591ad5129a ChangeLog 1159
 MD5 1dd4c84764d44a71e93db41f6904b516 seaview-1-r1.ebuild 922
 MD5 7b87a6c33de5295e356b67218bd4fba9 metadata.xml 614
 MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26
 MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1-r1 56
+MD5 d13f3abed50e95fdd7a2ced7815ebdc3 files/digest-seaview-20041220 69
diff --git a/sci-biology/seaview/files/29seaview b/sci-biology/seaview/files/29seaview
deleted file mode 100644
index 64f2831dcaee..000000000000
--- a/sci-biology/seaview/files/29seaview
+++ /dev/null
@@ -1 +0,0 @@
-PATH="/usr/share/seaview"
diff --git a/sci-biology/seaview/files/digest-seaview-1-r1 b/sci-biology/seaview/files/digest-seaview-1-r1
deleted file mode 100644
index 1b50df5638af..000000000000
--- a/sci-biology/seaview/files/digest-seaview-1-r1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640
diff --git a/sci-biology/seaview/files/digest-seaview-20041220 b/sci-biology/seaview/files/digest-seaview-20041220
new file mode 100644
index 000000000000..246818de33a2
--- /dev/null
+++ b/sci-biology/seaview/files/digest-seaview-20041220
@@ -0,0 +1 @@
+MD5 e8e0b37910cba741563759034896450e seaview-20041220.tar.bz2 115192
diff --git a/sci-biology/seaview/seaview-1-r1.ebuild b/sci-biology/seaview/seaview-20041220.ebuild
index a7f92da3b8f2..00dfb5320c4b 100644
--- a/sci-biology/seaview/seaview-1-r1.ebuild
+++ b/sci-biology/seaview/seaview-20041220.ebuild
@@ -1,10 +1,10 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-1-r1.ebuild,v 1.2 2005/01/02 15:24:52 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.1 2005/01/09 18:39:11 ribosome Exp $
 
 DESCRIPTION="A graphical multiple sequence alignment editor"
 HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
-SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/${PN}/${PN}.tar"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
 LICENSE="public-domain"
 
 SLOT="0"
@@ -14,12 +14,11 @@ IUSE=""
 DEPEND="x11-libs/fltk
 	sci-biology/clustalw"
 
-S=${WORKDIR}
-
 src_compile() {
 	# Corrects location of libfltk.
 	CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1"
-	sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile
+	sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx
+	sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile
 
 	emake -e || die
 }
@@ -28,8 +27,4 @@ src_install() {
 	dobin seaview seaview_align.sh
 	insinto /usr/share/${PN}
 	doins protein.mase seaview.help
-
-	# Sets the path for the package's help file.
-	insinto /etc/env.d
-	doins ${FILESDIR}/29seaview
 }