New version: 148. Added 147-r1 to x86. Removed old versions.

Package-Manager: portage-2.0.51.22-r2

8 files changed, 24 insertions, 63 deletions

diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog
index 138987566c85..58f2b7c8491b 100644
--- a/sci-biology/cutg/ChangeLog
+++ b/sci-biology/cutg/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/cutg
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.19 2005/06/26 18:22:46 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.20 2005/08/06 19:13:09 ribosome Exp $
+
+*cutg-148 (06 Aug 2005)
+
+  06 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -cutg-145.ebuild,
+  -cutg-147.ebuild, cutg-147-r1.ebuild, +cutg-148.ebuild:
+  New version: 148. Added 147-r1 to x86. Removed old versions.
 
   26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org> cutg-146.ebuild:
   Stable ppc-macos
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest
index 9bc764776e89..14e54be61dd4 100644
--- a/sci-biology/cutg/Manifest
+++ b/sci-biology/cutg/Manifest
@@ -1,10 +1,8 @@
-MD5 87284629b88098b349f41fd6e3b28f03 ChangeLog 3051
-MD5 954d02893953b8f9c904299f892979ce cutg-145.ebuild 1169
-MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
-MD5 1d04a7e8db0c98196fc181a2474ade73 cutg-147.ebuild 1173
 MD5 a1e5a3df160077c75265aed19f321ed3 cutg-146.ebuild 1167
-MD5 30f6e7ce50789a9091d3621b25b993ad cutg-147-r1.ebuild 1287
-MD5 83fa71b1c66f960bfccd8e17201c09de files/digest-cutg-147 63
-MD5 9c6a185b26bf5647beb885860099151f files/digest-cutg-145 63
-MD5 5de9ff1df8fe00fdf41b5b7c0db04fba files/digest-cutg-146 63
+MD5 0a3536e86ebde93c34b2109e3832318b cutg-147-r1.ebuild 1286
+MD5 b482d223079e6d0a98bd693256ba51ae cutg-148.ebuild 1284
+MD5 b1d08df5cc629e8992d6d5bb3ab8f4b4 ChangeLog 3271
+MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
 MD5 83fa71b1c66f960bfccd8e17201c09de files/digest-cutg-147-r1 63
+MD5 5de9ff1df8fe00fdf41b5b7c0db04fba files/digest-cutg-146 63
+MD5 8fe4ad8cd05d6466bcf6c253c5a18ba4 files/digest-cutg-148 63
diff --git a/sci-biology/cutg/cutg-145.ebuild b/sci-biology/cutg/cutg-145.ebuild
deleted file mode 100644
index 176db7d6ea51..000000000000
--- a/sci-biology/cutg/cutg-145.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-145.ebuild,v 1.4 2005/05/31 02:37:16 j4rg0n Exp $
-
-DESCRIPTION="Codon usage tables calculated from GenBank"
-HOMEPAGE="http://www.kazusa.or.jp/codon/"
-SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="~ppc ppc-macos ~ppc64 x86"
-IUSE="emboss minimal"
-# Minimal build keeps only the indexed files (if applicable) and the documentation.
-# The non-indexed database is not installed.
-
-DEPEND="emboss? ( sci-biology/emboss )"
-
-S=${WORKDIR}
-
-src_compile() {
-	if use emboss; then
-		mkdir CODONS
-		echo
-		einfo "Indexing CUTG for usage with EMBOSS."
-		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
-			"Indexing CUTG failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		mkdir -p ${D}/usr/share/${PN}
-		mv *.codon *.spsum ${D}/usr/share/${PN}
-	fi
-	dodoc README
-	if use emboss; then
-		mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
-		cd CODONS
-		for file in *; do
-			mv ${file} ${D}/usr/share/EMBOSS/data/CODONS
-		done
-	fi
-}
diff --git a/sci-biology/cutg/cutg-147-r1.ebuild b/sci-biology/cutg/cutg-147-r1.ebuild
index 28de1b9a4f21..0268d261113e 100644
--- a/sci-biology/cutg/cutg-147-r1.ebuild
+++ b/sci-biology/cutg/cutg-147-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-147-r1.ebuild,v 1.2 2005/06/25 21:36:59 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-147-r1.ebuild,v 1.3 2005/08/06 19:13:09 ribosome Exp $
 
 DESCRIPTION="Codon usage tables calculated from GenBank"
 HOMEPAGE="http://www.kazusa.or.jp/codon/"
@@ -8,7 +8,7 @@ SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
 LICENSE="public-domain"
 
 SLOT="0"
-KEYWORDS="~ppc ~ppc-macos ~ppc64 ~x86"
+KEYWORDS="~ppc ~ppc-macos ~ppc64 x86"
 IUSE="emboss minimal"
 # Minimal build keeps only the indexed files (if applicable) and the documentation.
 # The non-indexed database is not installed.
diff --git a/sci-biology/cutg/cutg-147.ebuild b/sci-biology/cutg/cutg-148.ebuild
index 1e0387019461..703535511234 100644
--- a/sci-biology/cutg/cutg-147.ebuild
+++ b/sci-biology/cutg/cutg-148.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-147.ebuild,v 1.1 2005/06/19 00:38:11 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-148.ebuild,v 1.1 2005/08/06 19:13:09 ribosome Exp $
 
 DESCRIPTION="Codon usage tables calculated from GenBank"
 HOMEPAGE="http://www.kazusa.or.jp/codon/"
@@ -22,7 +22,7 @@ src_compile() {
 		mkdir CODONS
 		echo
 		einfo "Indexing CUTG for usage with EMBOSS."
-		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
+		EMBOSS_DATA="." cutgextract -auto -directory ${S} || die \
 			"Indexing CUTG failed."
 		echo
 	fi
@@ -30,15 +30,17 @@ src_compile() {
 
 src_install() {
 	if ! use minimal; then
-		mkdir -p ${D}/usr/share/${PN}
-		mv *.codon *.spsum ${D}/usr/share/${PN}
+		mkdir -p ${D}usr/share/${PN}
+		mv *.codon *.spsum ${D}usr/share/${PN} || die \
+			"Installing raw CUTG database failed."
 	fi
 	dodoc README
 	if use emboss; then
-		mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
+		mkdir -p ${D}usr/share/EMBOSS/data/CODONS
 		cd CODONS
 		for file in *; do
-			mv ${file} ${D}/usr/share/EMBOSS/data/CODONS
+			mv ${file} ${D}usr/share/EMBOSS/data/CODONS || die \
+				"Installing the EMBOSS-indexed database failed."
 		done
 	fi
 }
diff --git a/sci-biology/cutg/files/digest-cutg-145 b/sci-biology/cutg/files/digest-cutg-145
deleted file mode 100644
index cf3453c4baa4..000000000000
--- a/sci-biology/cutg/files/digest-cutg-145
+++ /dev/null
@@ -1 +0,0 @@
-MD5 13ab4f6f4831928ed4c7b7ae006d6c5f CUTG.145.tar.gz 132132082
diff --git a/sci-biology/cutg/files/digest-cutg-147 b/sci-biology/cutg/files/digest-cutg-147
deleted file mode 100644
index 666d83858811..000000000000
--- a/sci-biology/cutg/files/digest-cutg-147
+++ /dev/null
@@ -1 +0,0 @@
-MD5 b2a7fd01f46cb72ad31b0129ed2dd54d CUTG.147.tar.gz 142239582
diff --git a/sci-biology/cutg/files/digest-cutg-148 b/sci-biology/cutg/files/digest-cutg-148
new file mode 100644
index 000000000000..fe362594475d
--- /dev/null
+++ b/sci-biology/cutg/files/digest-cutg-148
@@ -0,0 +1 @@
+MD5 f96875e0c32a7ef1433c30ea28b0c612 CUTG.148.tar.gz 144554145