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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-10-29 01:47:54 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-10-29 01:47:54 +0000 |
| commit | b53e5edc540f854238a06776f4441803bc49ac22 (patch) | |
| tree | 5de08d934d8508b83ee9d56ce7e464ee92d20d88 /sci-biology | |
| parent | Version bump. Drop shared-mime-info patch as the issue has been fixed upstream. (diff) | |
| download | historical-b53e5edc540f854238a06776f4441803bc49ac22.tar.gz historical-b53e5edc540f854238a06776f4441803bc49ac22.tar.bz2 historical-b53e5edc540f854238a06776f4441803bc49ac22.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/shrimp/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/shrimp/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-1.3.0.ebuild | 34 |
3 files changed, 43 insertions, 12 deletions
diff --git a/sci-biology/shrimp/ChangeLog b/sci-biology/shrimp/ChangeLog index 1efc7605868d..a0cacc928d93 100644 --- a/sci-biology/shrimp/ChangeLog +++ b/sci-biology/shrimp/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/shrimp # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.4 2009/09/22 14:08:40 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.5 2009/10/29 01:47:54 weaver Exp $ + +*shrimp-1.3.0 (28 Oct 2009) + + 28 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +shrimp-1.3.0.ebuild: + Version bump 22 Sep 2009; Markus Meier <maekke@gentoo.org> shrimp-1.2.1.ebuild: x86 stable, bug #283679 diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest index 05fea4045044..a343455102eb 100644 --- a/sci-biology/shrimp/Manifest +++ b/sci-biology/shrimp/Manifest @@ -1,14 +1,6 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST SHRiMP_1_2_1.src.tar.gz 102426 RMD160 59c241bfa0570b9dcf9222f6b8991ba1f88ac28a SHA1 6b54b5aa38f4d79cc3fd1fc97cd327f650f0d9ee SHA256 8fe55ca7cda3b90e8daa094fa3b4ee902271779fb5eb6a6d6f31bb4ad9a4db0a +DIST SHRiMP_1_3_0.src.tar.gz 120128 RMD160 67bbcf4651a7c402bc771311b2136462319d216b SHA1 df503391706a6c1473962fff0f8fc237fe1d6f60 SHA256 7607891dbfb148f8dd809efa996a50eadea9169628635201fbaa8a5227d44860 EBUILD shrimp-1.2.1.ebuild 777 RMD160 0110e4c17b74fe962d4159ed4b570af6bdb0c319 SHA1 6b63deee171c03c235adc757a52776c4253261df SHA256 a20bfe4ecd381bc2274192f74b78f9c4df2d1b60721f073945f323814fc63aac -MISC ChangeLog 799 RMD160 8ea18ac16ff3466b70bac96f8d35abadaf96172e SHA1 c2ee65b0ed7a71a641b0affa10d8c252052cf504 SHA256 7a40391dee5749973c7c7f5cc11cfc6990a6654eb266a5c76cfcf6a906c968e3 +EBUILD shrimp-1.3.0.ebuild 779 RMD160 774507066c1da133c5807bfcbef005f3be6a43cb SHA1 10704f9211f3b615b5338292f00ffbbe914c02c0 SHA256 cf184f6bd1eea36edb132108464956efabcb5cb80d456bd4fd748bd0c50949fd +MISC ChangeLog 916 RMD160 c781d93e8d8b3afc294450c2b1a1da036f4cac3f SHA1 4c9c535c28a910eaeb1b6909cc5ce6447e5a8181 SHA256 b1a07f2e3f31e24099249a3b16340a2c1073d6331a96f71da85fe6738a6056cc MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAkq42pUACgkQkKaRLQcq0GL9QQCgrZFnCzkft++jV7SESR2UbvAm -YHwAn1bsQTV+WEv9NGuwCJInONNBBCEl -=PpYB ------END PGP SIGNATURE----- diff --git a/sci-biology/shrimp/shrimp-1.3.0.ebuild b/sci-biology/shrimp/shrimp-1.3.0.ebuild new file mode 100644 index 000000000000..c9e10ef40666 --- /dev/null +++ b/sci-biology/shrimp/shrimp-1.3.0.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-1.3.0.ebuild,v 1.1 2009/10/29 01:47:54 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./_} + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_configure() { + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO +} |