Prepared for prefix, #325929

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

5 files changed, 52 insertions, 17 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 294e9c88c85b..a66ffc03fb6e 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.8 2010/05/05 08:00:05 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.9 2010/06/28 21:32:20 jlec Exp $
+
+  28 Jun 2010; Justin Lecher <jlec@gentoo.org> mira-3.0.0.ebuild,
+  mira-3.0.3.ebuild, mira-3.0.5.ebuild:
+  Prepared for prefix, #325929
 
 *mira-3.0.5 (05 May 2010)
 
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index 287ff7c3a91c..8ae3f90ff49c 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX mira-3.0.0-asneeded.patch 1468 RMD160 5ad66bd3a1861ef984af4fb2b527755fd8901440 SHA1 f17e537e98f77eeaaf7502894f8383dd96c588bc SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f
 DIST mira-3.0.0.tar.bz2 7323621 RMD160 ab95d728a74b101ff49bea80bc5648fa9ebb69b8 SHA1 d736b324115d24270602cdc7066feb928869a916 SHA256 564177fb9777ecdf657640f8e7ea5d7aa0e76b35cebb882ccf77e1714d2fe21d
 DIST mira-3.0.3.tar.bz2 7170009 RMD160 fa96aded8a6b232c2e62b1f67349ac5f0dfb455e SHA1 eb8b7e19852f4f55387f6485aa07fa2298266bf2 SHA256 35194676d2414765bf9556a5d8f38f9d005df269e181df140cfaac5870c6a8fb
@@ -5,8 +8,15 @@ DIST mira-3.0.5.tar.bz2 7132355 RMD160 206f209dec8ac32f8192160a7642e3d27a42df25
 DIST mira_3rdparty_06-03-2010.tar.bz2 26882 RMD160 78dad2e93ab436843b8e5275cde9421d84c69143 SHA1 edd1629c7f91d99d3f0f807d45e9b3997d845928 SHA256 fed4ecc77f6bc63ac96864d0e10987129f64613a461715399b24f62ae0802c65
 DIST mira_3rdparty_17-04-2010.tar.bz2 31296 RMD160 888a38f865963b3109d3a331604e079010b55d81 SHA1 5f2fbe3e2e1bb5c5de44d414963e57b8dbcf760c SHA256 ec2c77508d75b7c28d3d26137ab69648b1ed653af93d486245ad0e4624e332b2
 DIST mira_3rdparty_31-01-2010.tar.bz2 23314 RMD160 d1edd2281693db1f7c472390128551c7f45775ab SHA1 0add918747b1d7ff50b81df767e4839463b06f06 SHA256 8b042447e7f6f7de15166c9b667477358a9f78a6c98347bb8eddf278c8a8c50b
-EBUILD mira-3.0.0.ebuild 1284 RMD160 8f42b6262f349a6e7062021f4ec8cf0af3986308 SHA1 c68947cb1b84e8ea5433f218f77280767f6c9fa6 SHA256 3effc7c86c50ca88ea2471e93283ed41fdc52ab407a3344026adc2fb15cb0a0b
-EBUILD mira-3.0.3.ebuild 1288 RMD160 24114d23e2465d9c732512282496b2a3ae5fb8d0 SHA1 aa60650afae63ba52a51abaf29a350e5424039a5 SHA256 ca19bcf675cb1d48ae5cd5163cbc599b6331d41ec9beb58ab294e82e7ababd83
-EBUILD mira-3.0.5.ebuild 1298 RMD160 7024cfb4d77ea6bf93055867ded6f131daf61578 SHA1 875b6297bc2b33576dabd671eddc9a2081ab40c7 SHA256 b46f6f2b5d4e9542bc601c47adedb5af8939bc23c96730bb962589ff900ab8ea
-MISC ChangeLog 1281 RMD160 a1809fc05cad32d1810d956821de952f5a992866 SHA1 0affecff4a5b41b36a9ede47610bbb0d0b1efd75 SHA256 a72f96f44879632cfc4b7d04ee1ca0e1612b06c39baa83dda5629e793be8fd6e
+EBUILD mira-3.0.0.ebuild 1494 RMD160 f8b5a22cdd044a2a80c8b2d64f789df4ae6e83ba SHA1 7ecfdae1d7c51fbcdbb52dc6fad3ad6da613f5f0 SHA256 57a0c93cd62354d09a9fcb845a5a36ca1a5e5236b8bfd6fcaffce23f8402d22a
+EBUILD mira-3.0.3.ebuild 1501 RMD160 d0a244f2dd73b38c20a92c27646d058cc605e696 SHA1 50fb7e2e068c1ba434e1cbccc11f03418b1872d5 SHA256 f7641485a1f81cf86bbd43f70d74bb171437e345529207a60d972957c0ece312
+EBUILD mira-3.0.5.ebuild 1511 RMD160 2202261d79da75665535dae8998892488bb53b62 SHA1 7e91ed3e978eb25b201a404ae027978d77c9811d SHA256 1d1d6859664999c3f6a713478184d2f941e685d6e8a057cb61618da4e0868e58
+MISC ChangeLog 1417 RMD160 227deb78aa1d56a955c1d6b6a8a59c9adf09322d SHA1 af9a08c12519808b3d862f29e192cfa48b2d9b2f SHA256 c38f1d05cba9bcec8feb83ea563ef47f0755d2ec77f17752986833dd43b2b2e5
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.15 (GNU/Linux)
+
+iEYEARECAAYFAkwpFOsACgkQgAnW8HDreRYhLwCfUNfi1igrzpXHenb6sGr1OQ4A
+axQAn1qfv1lTa+fQYTFqpwQyLXUrIr6f
+=TaCS
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/mira/mira-3.0.0.ebuild b/sci-biology/mira/mira-3.0.0.ebuild
index d112bee41571..3e2c7b2a8e47 100644
--- a/sci-biology/mira/mira-3.0.0.ebuild
+++ b/sci-biology/mira/mira-3.0.0.ebuild
@@ -1,12 +1,12 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.4 2010/02/25 19:00:05 ssuominen Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.5 2010/06/28 21:32:20 jlec Exp $
 
-EAPI="2"
+EAPI="3"
 
 MIRA_3RDPARTY_PV="31-01-2010"
 
-inherit base autotools
+inherit autotools base multilib
 
 DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
 HOMEPAGE="http://www.chevreux.org/projects_mira.html"
@@ -16,7 +16,7 @@ SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
 LICENSE="GPL-2"
 SLOT="0"
 IUSE="doc"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
 
 CDEPEND=">=dev-libs/boost-1.35.0"
 DEPEND="${CDEPEND}
@@ -30,6 +30,13 @@ src_prepare() {
 	AT_M4DIR="config/m4" eautoreconf
 }
 
+src_configure() {
+	econf \
+		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-thread=boost_thread-mt
+}
+
 src_compile() {
 	base_src_compile
 	if use doc; then emake -C doc clean docs || die; fi
diff --git a/sci-biology/mira/mira-3.0.3.ebuild b/sci-biology/mira/mira-3.0.3.ebuild
index 3475a31e9764..e4c046f191e3 100644
--- a/sci-biology/mira/mira-3.0.3.ebuild
+++ b/sci-biology/mira/mira-3.0.3.ebuild
@@ -1,12 +1,12 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.3.ebuild,v 1.1 2010/03/18 15:32:24 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.3.ebuild,v 1.2 2010/06/28 21:32:20 jlec Exp $
 
-EAPI="2"
+EAPI="3"
 
 MIRA_3RDPARTY_PV="06-03-2010"
 
-inherit base autotools
+inherit autotools base multilib
 
 DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
 HOMEPAGE="http://www.chevreux.org/projects_mira.html"
@@ -16,7 +16,7 @@ SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
 LICENSE="GPL-2"
 SLOT="0"
 IUSE="doc"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
 
 CDEPEND=">=dev-libs/boost-1.35.0"
 DEPEND="${CDEPEND}
@@ -30,6 +30,13 @@ src_prepare() {
 	AT_M4DIR="config/m4" eautoreconf
 }
 
+src_configure() {
+	econf \
+		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-thread=boost_thread-mt
+}
+
 src_compile() {
 	base_src_compile
 	if use doc; then emake -C doc clean docs || die; fi
diff --git a/sci-biology/mira/mira-3.0.5.ebuild b/sci-biology/mira/mira-3.0.5.ebuild
index 00d6e0a564f6..b1219203ea53 100644
--- a/sci-biology/mira/mira-3.0.5.ebuild
+++ b/sci-biology/mira/mira-3.0.5.ebuild
@@ -1,12 +1,12 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild,v 1.1 2010/05/05 08:00:05 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild,v 1.2 2010/06/28 21:32:20 jlec Exp $
 
-EAPI="2"
+EAPI="3"
 
 MIRA_3RDPARTY_PV="17-04-2010"
 
-inherit base autotools
+inherit autotools base multilib
 
 DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
 HOMEPAGE="http://www.chevreux.org/projects_mira.html"
@@ -16,7 +16,7 @@ SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
 LICENSE="GPL-2"
 SLOT="0"
 IUSE="doc"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
 
 CDEPEND=">=dev-libs/boost-1.35.0"
 DEPEND="${CDEPEND}
@@ -30,6 +30,13 @@ src_prepare() {
 	AT_M4DIR="config/m4" eautoreconf
 }
 
+src_configure() {
+	econf \
+		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-thread=boost_thread-mt
+}
+
 src_compile() {
 	base_src_compile
 	if use doc; then emake -C doc clean docs || die; fi