sci-chemistry/ccpn: Todays pthon patches; drop old

Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
author: Justin Lecher <jlec@gentoo.org> 2013-11-27 07:19:34 +0000
committer: Justin Lecher <jlec@gentoo.org> 2013-11-27 07:19:34 +0000
commit: f1882e101a15c8ede893ee8120e198b12a019378 (patch)
tree: e26cedb261730e138886f24a70f05c5870889aec /sci-chemistry/ccpn
parent: Add ruby20. Drop ppc64 for bug 465948. (diff)
download: historical-f1882e101a15c8ede893ee8120e198b12a019378.tar.gz
historical-f1882e101a15c8ede893ee8120e198b12a019378.tar.bz2
historical-f1882e101a15c8ede893ee8120e198b12a019378.zip
21 files changed, 34 insertions, 3065 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 66604699c05c..6a4d0ee79995 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,21 @@
 # ChangeLog for sci-chemistry/ccpn
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.128 2013/11/25 08:11:30 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.129 2013/11/27 07:19:33 jlec Exp $
+
+*ccpn-2.3.1_p131127 (27 Nov 2013)
+
+  27 Nov 2013; Justin Lecher <jlec@gentoo.org> -ccpn-2.2.2_p121125.ebuild,
+  -ccpn-2.2.2_p130110.ebuild, -ccpn-2.2.2_p130116.ebuild,
+  -ccpn-2.2.2_p130213.ebuild, -ccpn-2.2.2_p130318.ebuild,
+  -ccpn-2.2.2_p130318-r1.ebuild, -ccpn-2.2.2_p130530.ebuild,
+  -ccpn-2.2.2_p130618.ebuild, -ccpn-2.2.2_p130705.ebuild,
+  -ccpn-2.3.1_p130813.ebuild, -ccpn-2.3.1_p130814.ebuild,
+  -ccpn-2.3.1_p130822.ebuild, -ccpn-2.3.1_p130918.ebuild,
+  -ccpn-2.3.1_p130930.ebuild, -ccpn-2.3.1_p131008.ebuild,
+  -ccpn-2.3.1_p131010.ebuild, -ccpn-2.3.1_p131015.ebuild,
+  -ccpn-2.3.1_p131018.ebuild, -ccpn-2.3.1_p131107.ebuild,
+  +ccpn-2.3.1_p131127.ebuild:
+  Todays pthon patches; drop old
 
 *ccpn-2.3.1_p131125 (25 Nov 2013)
 
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index 61b7fde03a79..46e61337da50 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -18,69 +18,33 @@ AUX pipe2azara 326 SHA256 8b17d8c11dcbfeac21da3ad927e2e8de73509d21e9250c328fbea1
 AUX talosn.patch 1358 SHA256 55e4e412158b851f040ac25d93b8b1a42ffa6354c26327cb8803288621787518 SHA512 fb4b74d0b07b9edf47135bb5d965b485ee62fde8e33c3b4dffb09092063368de6ae54435fc82aca87d88dd9a71cb1abb96446241c7d433bd2b0b1801e3e5ed5b WHIRLPOOL 5ff7c76822d8de0545d235118d50b80c0c6321d6b11ce9f3f0d1f36ae0c68d9d5753fdc8f81ef95b46345085c5dd6a349fdc70ff7f22a7e195fcf26d4475211c
 AUX xeasy2azara 324 SHA256 89945dae1c7bd78aefdd19c81c79571a13aaa149d6c50e12cc0ecd075930ed4c SHA512 de31df36c259fa58483c6a0e24bfa6ece3a86db5d556c5c99f610c7c2ff659742fcf319ef387538cc5a74444bf4be8ffff96da7ee819ac583e2605f4f90a5806 WHIRLPOOL 6a40d21fa7cef520de86f04282b5e26e3a8809c7a8caed8e19a0758419039358e1b1f33a53f956bc77a10cddda703cce8f21584d8e9e3648fccca3a486ab9be8
 DIST analysis2.1.3_1.tar.gz 18932918 SHA256 bbc1ba5434f896d38b6745c1dc9adc470a78d3be7b879160edcd635a19228b74 SHA512 ee95119a972ada7949d646e0fd634d1828bba7562d7ea3a3be1c2b17d22f194dbd1267716f21ce86fffb3eadec136b0b613705f862747ab7933cb2ad57e063b8 WHIRLPOOL 1fb19a4bc676955eca4168595fad0661054061e18fa6e25e7f4ed5026cf31faba75b7644a8e2e18ece10e9641efc81feaccf580d3c766bda1d5232a346d99133
-DIST analysis2.2.2.tar.gz 21044504 SHA256 8e46d12b8fb7763d282933e14ddfa9ce197954ed9fbfa2333e22602ac841b6e5 SHA512 efe8a82381521dbfb95b12dd553f401f200aee3763f9e739c37a9141a14bf038865b2a860b0353adc532582697b58079034386be42161aecbe231952b8abaac7 WHIRLPOOL c9d7fc936dc25b952e711e8fa439ada5a67e68497b6d4ad034586e604bcbd9d1ff7dd48d1a3baace347fc9bab5c17d2f7852906f921708a16ce8c8eb4a8659b9
 DIST analysis2.3.1.tar.gz 21702376 SHA256 892df0e2d999a9cac75438c5357d8766c9aa5f7d0d575e798d92638df26165e6 SHA512 34a86020e764bed9e85870a55896f9aaafdab4b50be6fca17d35830d013a314fbdc3d1609024b1d5ce8bfa306a3e5a39af9c70a751823adc12d38a26a424ff3e WHIRLPOOL aa7b4a3fd9350c9b98fa9226547635692eaff4a311951b2e89b493b258c1dc8353b9945fde46fc0fee4990cb4caa5615326e81532c579db34807221bdcb72e20
 DIST analysis2.3.1r2.tar.gz 21683215 SHA256 a9e47a24d84f7b8261c6c23a8607af5a6ba2f2db9e161a7f873794c1ba8663ef SHA512 96bf75d1e958340d83836348f5a3045e5b2632913c66d9d74272140085800ea096f1ae53eadfb5bc0eba76804f1864553e82a517d637bdc3bace71b0c1c785ee WHIRLPOOL 2d1e55a4d8e62decc649a885d767dc5a2bdec701447a97ef8bc5e15ddde8c6add5fb0606c0cdd5871bbb9af74c163a13a28207b3e254fb41ba56293c88d6bc85
 DIST ccpn-update-100806.patch.bz2 187965 SHA256 5cea7899edb96237a6674f04a1beee6ad7b309e12964ea8b25d9ea6ff752d0d4 SHA512 ab145f14137955bcb4dcc4d242eb718a806152bf3376e4cc9ff5e8186ed54812051ad07de1c9d2316ce3379c8c74db4af36f714aa3291ea7a1d11d4f432df06f WHIRLPOOL 2a0cbf62aca74e22fc0e00a0a91c3c185c10fb07277ba30791511565a2fa645b123a8c5164389eb9fb5a2d1f591e26c6416c46038acceefa2f1ecf347b631a66
-DIST ccpn-update-2.2.2-121125.patch.xz 223556 SHA256 996f453d7d6a143715a94b1201bd7b8b9c037f6d0baa342f5c0645d500aa5c79 SHA512 d213e072a63110ec478c3ee64792b01c818d3c9052ae6d7dac903508536f78c432c72d5a4756665045579d72f4f54ef5ac9db1fb02eb5ea3111eaa47e72866b0 WHIRLPOOL c268761e4d9cf4c845964c7c865e20439a9cacd00bc56d89d8558e0f601fc9840d4288307c4a4f47ba6d478eb9da9dacd1e149c657d2e6506ef5e32d6b0b75d1
-DIST ccpn-update-2.2.2-130110.patch.xz 226800 SHA256 6c0f4d71322e45ef24a15f1e26eb5d4104499fc2391660e575158dc08ae0380a SHA512 2fa7e782ca30402c91793032dc0d4555d9e866ba11b03f8f4b06891c8c80d256f5598bccfc99e9a97ae9b3618b1c24307814de4656087e2c0b40d378df743e47 WHIRLPOOL 5a49c0480328e7b03691a1e63fea339e2a9a29afd845babcce70e57b6e8d6ce21a5cb612d856c22bd3a9033a9ab565b0149e61435bc31ffdf02e247051e29d6d
-DIST ccpn-update-2.2.2-130116.patch.xz 227144 SHA256 df7ea8439f58a32d3e9c9fe9dc187bb7fa6d51cbfdcaa0fa3dfec8e055cb2538 SHA512 34396fcc1688b2f1c6de62d6c89cbc6cbce606fc4191dd1c6f04bc5fb372f88dc9e54b94d4d42ecf1f49c5db1300a983e8fc8020c07911fc0656d48888f7a84a WHIRLPOOL 956ca65b9e42d2c2cd4f917284772ff94911da8aba138e7dfb955eb865dc02481f44305702d7f8343ceb45ae2fe840cd301446caa2f58234ecae2af4755b722a
-DIST ccpn-update-2.2.2-130213.patch.xz 228908 SHA256 45d6fde3aff5f1d4c6f324501867a4177c0500b8e427541e31c74d9fd65a220b SHA512 2ade631eb7123eb67573294debcf5ac25c47f9b68e88942e7d2680e1bd813dedbf1a9b36cba86b8bbb48378310fed6a4211eb0af7177a739b634415b80c0081a WHIRLPOOL 5ca9808940a87652ce01cf54163bad035edfa204f8dfedee7868ae7438daeebca8217cf7963788e996307164e785b2d3be2869ff509505c6f72f65db9202dab6
-DIST ccpn-update-2.2.2-130318.patch.xz 231912 SHA256 ada36dce0c715ad39ab0446a2f6462a983feb6f3dbaa966222bce42a7e2c0ece SHA512 1fa319007405ca15e97ed68a9c703203c93f0dc5a2e6b06d36b5570ac3787f250f5335eda4cc38768a5b37870aafe6cef47e5a96378747c46858040e8bfc4b61 WHIRLPOOL 0315de7b0e3f4843de56e6c7f7612b99e5feae1887832ebf0fa19dddafb4a82759b3fbcbfd17904cc2cbcc9d0daea6fe93a310732e799bc40c1ae36ec8a5e8ff
-DIST ccpn-update-2.2.2-130530.patch.xz 241280 SHA256 9d6d1e4646f45f9857128c20e892ba4469fac14d2d394efa5ea83577209ccf3b SHA512 aff279a86a9df6768c96f4e6f29cfcabc30892fa665b9bdac5f93692634d9b6702287316a790ed186753728fbb904f5d37c923473da9c5b2501ee11a11d03aac WHIRLPOOL 75a1e6c577a7d9d4501d824c5333cdbaebaaa848e4d9e826205222341eabcd984bfaf1018557eabc8af3ca0aa71f356d80e64dcb25750ece8ad8cb47272f9695
-DIST ccpn-update-2.2.2-130618.patch.xz 242764 SHA256 c605c92a547e50e64f5c97ae5eee5fab82728b1b0f1ab6170ce93f477e03096c SHA512 0b0bc5ee4860a6979d65b07fafe1747b6794a9197d28aa56f8bf121ee56a1a343f8c6cb65e7d93736afa9b3b4893d3ad692415bb75b4ce4d11b3e56033c4dc40 WHIRLPOOL bc6539af061085a03348e385527bdb4e2f79d27afd2dde5b50234a8940ff075ff58326b11371d1e5c154380f7d9cae060f2d72a57a52481990ca20ac6248b65f
-DIST ccpn-update-2.2.2-130705.patch.xz 248520 SHA256 12951d154579b23e110f4f326fe880c998ca0027aaddfb602a4eceb9b493ee77 SHA512 6fa4f6e83ac5d02b74d36ba9eea311c4c5764b5898280310ab9e0ba8f580ae53bbce17da49990aaf82e67b389019e0836534463777f8c6c0245cf51901a562f7 WHIRLPOOL 8fff3c93e8f985b36bacc00142b8289e9ef0a3726f5b9bc8d6be70c5ee1b3cffe3c504ce935ae219d98fb9500c56cd4e3b86a7397f70fc30378cae455315d5e9
-DIST ccpn-update-2.3.1-130813.patch.xz 1108 SHA256 5f6b5c5e1d5bb221585f23e7e60484ec35a07d418a2b0ff0cd2d26a3974c2e54 SHA512 b4afc4d8a2ee8ea1c1883055960ac9d14ec2496b26c2966f1a972ee7d46c1d484a11badd639426d9c2afa09b259ff125c34346355ea79ab5393936df22aa60c7 WHIRLPOOL 12bbc548b7d871bf0c6a836067209e13671aeefc66f3d8a326256bf5bfa4c15858acac0c5d7bcd8a69bf6218a010058b7497d7b6a5385868df92236200aec50a
-DIST ccpn-update-2.3.1-130814.patch.xz 1308 SHA256 67e29aa7e4c43b2249d230937e8b8ba25991de9dadc57ac9f8e30f0712591546 SHA512 2ec9f81ce5a6607f227119fcce31477d9017406a14fdced6832b7464f0b684e340c21b9402653641aaf3112c7956366106d86c881ff25ebc0b4af1fb7161759a WHIRLPOOL 96d43d3b53a35088d8c162573ddc1db6368371fbe932b43954604e8b1343d13f5a3ca61ca75ab9be44af814e68fcb0eb921dfee34e4f11fb3f947675c5177739
-DIST ccpn-update-2.3.1-130822.patch.xz 648 SHA256 5d240fc2a0c79c72c4d2aeffd08a5c7505a26ecaf6372e03a965c3b580e33edb SHA512 0e4987e583489d17f20c08679c6fa8a1521a83569804256e542dcaa97c16e8770765a53fece0091c6f2de1faf1d94c8c000e69677aabd7ce7629693838f02be3 WHIRLPOOL 0c594b19e86181e5326543a6a91f758fcb14800eb0e210d7d1c4e1ebc75579ca3ca8c3a01b269e86c5efa76ddaa3e975d88865dc1f5e9d0bb1bac4cbd1c1f3bd
-DIST ccpn-update-2.3.1-130918.patch.xz 1408 SHA256 331a3019492da127bb8a2de2252776d20b5bc1ec586f5a3176fc8eb2cfdb8fc8 SHA512 b63e6467dd8344b208cf6f2ce66c7aeca464b5921fe49ad1043be841a95bb07c749f359449e0f6c5a0fa55053805013420390f9db6b44762720b8f49eabe59dd WHIRLPOOL 4de6669ee58bf8ad296f2c69b5ebe5d177fdee604f8a483f116a0aad7aa8c137a1e260849cae6f5df5361d4852b79a2ac727099c88ed211a60fe3025352b5cd8
-DIST ccpn-update-2.3.1-130930.patch.xz 3540 SHA256 311cbf0e3bbb77b68ae77fe2f7092c6e1ec98dd4d45d36daac584e90a1af28e5 SHA512 0bc23e01824040e32149f30af729b1baee8a0d53092c0610227df17c08fcbb9ab9df4d9c17d75f710c7a79ab5c5738c91cd4e1cf523dd9dbcc498755cb7537c7 WHIRLPOOL cfaaeb8834a2b1fe02fb9e0c63c07482ad5fd32cadb9898c00a43e235eead1633ee3a2b488385cbf96f73a161d06bd7fb1d8d76dce79f177abdd75ce7e3fbc13
-DIST ccpn-update-2.3.1-131008.patch.xz 4980 SHA256 f52ee972d459f6f3169b24b2858b1e912c950ebcd57905bbb1633e54dbf00a4e SHA512 12db64c4f03e5f14f1998fd713459f1d7ffc7355c2ac2cdcc8d5b48a46b59956f6ec6bc0b9f37c785c70630b3736886c9b8818612563d73840699e976a65cd9a WHIRLPOOL be9bde47b0373cf463d94720d9f8b342f12cf6afe57c07f1d6a541beb3decb604eddbaac886d23b9eb4806d8bf049e6d1fde4ba2caff19fdc27b1dcb347818f2
-DIST ccpn-update-2.3.1-131010.patch.xz 7352 SHA256 f447df5334aac40847c9796421b5af8c4d290355b8f4a7de67ea6735683efca4 SHA512 865f3c39398f0c55a1f219d816c5a0395e9c7fa71b6f145c05959c39a4971c451f7162e9d23e5e0b000e0a2f7754bac6d458875b897bf3c3d4ed9a72f80a5561 WHIRLPOOL 60616ccaf6bdd2cabf6bf23813a761e00d8dca31ecb0e8d34c8a7ddc2983c8643a12392ccd7e1b5c356cc40456df9140801b842bc7170fa311c273cc5ed762db
-DIST ccpn-update-2.3.1-131015.patch.xz 7676 SHA256 df46e2f39ff6a9feda6bd9d4480d94af0f0282e318f6e3e27fc3d5b6ee1888db SHA512 c1ba9a0b9766a5317564978159a7e7c3176d382ff0e5d4547a372666309c614079254e772921761010e23ce61a81b1cdf4f99b3b58880ab9901ab372adea1055 WHIRLPOOL 4d008ac4c4861083091c557485afe0efd9dcfd982f1c241987743cb494f36ab084b27449cf2e528c2b95e2048dc67e90e58a4e0e3de283b81e17478b6900cff9
-DIST ccpn-update-2.3.1-131018.patch.xz 8152 SHA256 03d51dd46b68b426dce8dcdc479add7a3c865c98da1528854538422ebfb93952 SHA512 cf396501bdabca724cf691cb35a7acaafc5b7253f15eaf6c286a52afbf629b1babadd837facbafe50d9a960699647640ffc009ae58da4cd1c288b752ce8a96fc WHIRLPOOL dbb69d3df269cd569939783963243496552b3ea551a5e7e4362d2815aad533142a884183ca1bed3af4c54933eb03e835cc9b46662dc8021705507eeabbb6b2d3
-DIST ccpn-update-2.3.1-131107.patch.xz 9316 SHA256 d01b8cdde7f459027b731649526fa8bd84ce3fff6a3e10df8b26bd3a52df80dd SHA512 c18784d29d7f15ddf74229d0a44162595d953db76663450101e2d65ca7834dafd0137c2f5742d66a7b89a4af57149f49ce0bb01e62c198da3c93ca3c6a4c2002 WHIRLPOOL ef571e4a279a15e434bd264d9f1213c610a79dc9d9e4c0318ac99b29213ee2018ca02617b62632a791f61b9c7479586567983a43c698f4423d90a9aaa554c7d1
 DIST ccpn-update-2.3.1-131119.patch.xz 9908 SHA256 c6098bed0078773a5a1adb91ed5c02d202845d9fe2a94481b0ea1e0556c2475a SHA512 30a3c7b203eb49de974de6eb5c466a82be58a7679bb0798770adf0011e05cde1130b79453ac407cb43c03f6be464db04b5bff3fddb5c09952ae182343253fcc5 WHIRLPOOL e8bfffda3d08c7fdbd00b905a9d8f6fca736f64b54ec39b6d31120381af2503e1cdf9f338cbcebe5eddf398b5eb4cc576147e9d7bfe06a44fd0a642e466a8dda
 DIST ccpn-update-2.3.1-131125.patch.xz 10160 SHA256 a386e70114b61de2957eccbfdd39f099606f82d0081949923cc68493e69df8d5 SHA512 20457e5b16d834f6c4d086b0fd6ebdd1b23756c170be6dd67766e153e6ed33fe4511a5f718ca99e6f44fc99eed00f90c3f34dc67c14047f89cefcbc100acbdd0 WHIRLPOOL 5d2f072a2ea2f4510172d633cad5de753401b536ff12e3dbe20a5df78feeb414c8457b3965744bb14f8f44fa586c099c095e0acf016aa4f7da47ec1883af250b
+DIST ccpn-update-2.3.1-131127.patch.xz 10488 SHA256 513252fc6376d89e6bbbb1da1206cf0044513c896c8ea01af8262fcfcdb5a4df SHA512 ac4115d48cc0c8d707978216732fe1f29a0b4e8b9900f029707f483a16fb1b5f1e7055bf33d828455babe52afff13485d32de4729bebc567ffa2d19575ecad80 WHIRLPOOL f05d2149f16c6decc93d30ad55a2f1232e913cefc2fa6f1d6bde42534f0695fe68f3a245164b4408f063a1297df5e01add60e01cd9a77528a5833da7c0d78c91
 EBUILD ccpn-2.1.3.1_p100806.ebuild 5181 SHA256 c3ba268461da63ea23ee7f621a8e4837a368eb3e4c85bcc5245250fb6b377b58 SHA512 701ea90a13dc44e5bf1ea17c0f69adea56b1c14788ab79c67fa4b9726cae532998717515568045aec9bb4e1dd4c352227130115d90c50bf07e7fd132cdee385d WHIRLPOOL 898a618f95b254785739e6fab20af333cb3a44bff12cd6840d1b111f1588a60e48055e8af7ca88457173452f6acba86ebd3bada96390211bc4cd063fe4160fd5
-EBUILD ccpn-2.2.2_p121125.ebuild 4612 SHA256 08a4b0682c049a6301138ea6f24d665edb0a8d8d709ed2c2f2529aa0a5e648a1 SHA512 f8c45f0b19a721775dab3147cced933e8db969e8443c15cd2bd2a31ffc3fcd0eda95acc75a93df5d0dd51dabd80fde8311a7b02bf3f6a051bc0855cb156755a5 WHIRLPOOL 427cacc0c080197cc79a867f1cf1d5bed45cbfbb0f8c5dc6456548218895ff25023ea30090e751af78b77fffd47f87f7aac3869a8ed13aa3727f2f12bac743b1
-EBUILD ccpn-2.2.2_p130110.ebuild 4649 SHA256 53125900943ea89ba3d3483de29a240a0e7282098af869a04bc926c34f3bf51f SHA512 8406a93562897aadfefd03e098b393af5fb29f9bfde8e5727b73ceb6cbe004b73cfd97b61e942189d9fba717761b20cc4914e5c9d858f36bbdbdeea1369490e7 WHIRLPOOL 112e9cab77898ef9246b127d5ef8529948cfaf91157a25bbe39899560af8340f8e5cbd1e2a3935dae083a9291f0d569d3cc5b7588dc2029f3342ecbe5590cb0f
-EBUILD ccpn-2.2.2_p130116.ebuild 4649 SHA256 b1832e30ba4cf40a79a8781f0e84c49f35245ea36a42e7ca5adf2019bcacfdca SHA512 52fe7e59bb3a801ac30f0fb1d503622a0d6e18357fec14a73c9b83d05fdbac33d594e636ab5e72df6eea15dc796ab90c113d0715f1dc06d3ecebfcfcf9fc186e WHIRLPOOL 617306f09808d9bdad288990ffc3da5cacfcae8bfa8c07dbde20c879d9e5308a4d7d9d64afb217be0ef46801d22230a2b8a6152b461332b94448a01f813e4ffd
-EBUILD ccpn-2.2.2_p130213.ebuild 4649 SHA256 bf5b16abe8e4a864b6b8629634464cc026aaf80b45361ca85adb774f1f282d2f SHA512 2fbe3dfe634a43bfa543af91cf7778f178ed5725ad034cbf815c202de6a781b0cf2448efe6e99ff721872c168fa1d1efed784112bf3085d7f1174fc3d2e013db WHIRLPOOL 9c83b89f53e34fc65b169c22686f472b6f2adf92feaa965608b7b725fc7d2507866c7fe32f09100a76d58d0c53e47ef61534612c933199017203a72213642a07
-EBUILD ccpn-2.2.2_p130318-r1.ebuild 4650 SHA256 0de009b3a36dd7492c0535421b912d2c28127801170820b3ed08c501de21830f SHA512 ef19f109af73c77f4592e104ac036f4d1946820f9c1bdd5bbe69f9735bd7a8c2888a25e02a3f63d95176adece470940ca754485abb006064eda863fa75f98d9f WHIRLPOOL bd508e5fe2be30e7fff0551e428fd4daf6ef7402dee1da29e8332eb32c640f23444768645e1374bb583337d091336e391c93e83e2089ea4c726096e364ccde4a
-EBUILD ccpn-2.2.2_p130318.ebuild 4645 SHA256 3b525a7fd38c15aa11fe4e09955f2b6982dc0dadb2e736107fa18bb59fc8f8fa SHA512 0e7597835f1dc1e7cdc7e6d414d122218394a1a8e90de6abc88e2d9a280045edd24d29f82fb78c8e7bec18d1d7c34b91bf612f242730a1b3d3646c39e10c4fa7 WHIRLPOOL d2ab5447827db6578b2d37d9e14f193e1213f15a3bee9b6ce3481eb48e68a8e2cab6df31c748a7d7cdf2ebbab0a097bb86380cfc4d35e95cfe90c2ecf5aef435
-EBUILD ccpn-2.2.2_p130530.ebuild 4647 SHA256 b346bcffede7ecae7c518bc982c3e5867791dd1ef6ef128354135b3d38c782cc SHA512 05b115a4e67c2d939fdfbd5556961943fd9c9a49a5a8a3a17776381f21ced3813666d81ff78825e47b0fa1ed1575f6dbc080b79c8e31d9037356275cebc29b84 WHIRLPOOL 11fef74b3fbea9eebed1e83b7554ec0d206985de4cce15649cd53692ca52607768030a40180f0f03465e78e6e78b6fa0f64165625bd1d968bf1a6e53c614f17e
-EBUILD ccpn-2.2.2_p130618.ebuild 4647 SHA256 f7490d2f0d0d51ae070beb9146d821a79ec05de22657f933b767fec35d125261 SHA512 0a280284f75de5360f7119d3c9bcee3b93f49a450c02b91d0320c06d168d398107fcb51ff337815fe3fa973afbe26b4403bddc520f68fae50d6c73a5c8451836 WHIRLPOOL d3ff0f667d3d0ac840e4cf26260428887014b087785140ba472915ba08d2aa18750986d302697395e629a0fa0c4010ed762d2dd28f8e9c591c2844efbee564c8
-EBUILD ccpn-2.2.2_p130705.ebuild 4647 SHA256 2c1f25190a3e9a40a74e5f36594e7500b537d4ae892012ea5f7876c7b08eeba9 SHA512 580a6a28a54560154e2941de3fa228e97e977a76923db7e9469f44f4ac9921d99c0a816d8e3e1340286a7e192f5c3675659208b31f302fa008e48b9d64099f0f WHIRLPOOL ae00ba5ac8c52c0e8ae9d425faaff4cda9b5a12605dbce699419784c699d52a95066b7174646990a52aa2cde0921e0877245e395ebd31384e18613c737099df2
 EBUILD ccpn-2.3.1.ebuild 4707 SHA256 b97f41d2321679a416127920c8457e2e019dd98ad79a3e563677c7f2d0f66735 SHA512 54a181c71e47659bc448845c2043f04358dec626162a8c72f392ba91833cb8cbabfc524da5239060531c5d4ca0b3f8d1c81a9a102e14d5014bf57e27e50aede7 WHIRLPOOL 1fe18f4b7349e96ed46648a29aa774fc8ccb6be3880b0f5558914d908bd080462152f3f6d461e961ccbace7d4f4ba6deb36770fa7304d796e6f359c202f5856f
-EBUILD ccpn-2.3.1_p130813.ebuild 4714 SHA256 69a4206eb202fc4e7262ba9a2900094ee107e7d872d7af4fc338d85ddbb69e38 SHA512 f85f8b7c5c0a9df83d5928517d549621c4444c7b07c4e48a783fec126bb3feab7854f80371c0980410bdf369b301548731825d24c1202473a9fe2d466f6517ec WHIRLPOOL 4235573b1bb1f4039fe49bdba8749b0d8bb1fb7105eba48cafd94e7f2537354e87d6de75ea7a549301233ed56ea87adb7d80fe0108508bb4180d1ad8c5eadaca
-EBUILD ccpn-2.3.1_p130814.ebuild 4714 SHA256 c50e78f7506b1b9f6bced8c745f514a5148518a14ce4f7b58b55c8a31ba2bce7 SHA512 72aa9b929d0f7e43fd2d4a537d84d5184e052d6d3e7ca6167e69026e5a6879699cda1f46ae480b847fbe900677e0cf7a10db4b018d8ed8b58daa7ca96f81e9ad WHIRLPOOL 9bdb917f84ca139e6a9aad4c7f159ce11589e9084459f092a2e0f4e712dffef6777a7c1bb86ecb40214fae23cc5d005799d9abfbf02025a1682a887c9dd267de
-EBUILD ccpn-2.3.1_p130822.ebuild 4687 SHA256 63a8d24b2cef235985bc0c7d3f34f22dac2b214155c67dccb12c75471f61b759 SHA512 f709dc1be89b66cffa9818e139fb012f3cf45552b0699a62dc0e3e7b47e251abd554fb03b9e810fc82bf2e0ba13bddffffea005d3716dce90a7035fcfea01649 WHIRLPOOL e7edb15638c826355e87881c21894569a5460b65c607ec8ffadb7f74ad337dc4ba225eaacc776b28e2115fbcb6cbce73eaa3d0dcff1a468ca4cca5d9d2df9e00
-EBUILD ccpn-2.3.1_p130918.ebuild 4685 SHA256 4a784b756590ee61b193d44e1addb0680cdae07675c1ffdd4478c44858651680 SHA512 e283a670a0d31ab9bb5a2286615c605e4c05dc9b5c96ba6d56fbbb9f75768d52c290257340a1bae3db9883d9b5a04e89dfd831b891b2d265ceb0884fd2aaee2e WHIRLPOOL 2923f87daeb23fa3eca9a7bbccaf931d3503df32400884e58193d9c2b6fccd662a9d27911aa6b9d3de10b2f81d71ce45ebf01d80184257636b6374d2cdbfee71
-EBUILD ccpn-2.3.1_p130930.ebuild 4685 SHA256 e1a004b4a163e0268943618080b315b39be7296585dee708b64948c93f77b514 SHA512 5a7a7496ecd4cf6d36b6f7215b17ac6565fb39e2f7f77bec5de225e012b732394df9bd82a7a7ecf948ff97ff5b8c476d72254d0edb0f57103bb7c11b02dd051d WHIRLPOOL f31e77528477a92e2c6acd13e6c9837effa830a00097ac075e8c7bed86eebc6f4e6f760e47793708f1eefcc45c638432d10f83b23802ed11816e6354fb52e4b5
-EBUILD ccpn-2.3.1_p131008.ebuild 4685 SHA256 ae08a4a528ecc7828b6e176fed7ebe967352c3fbe6306e12348e3504b0e37f4c SHA512 a14bcb3596fdd130b5f8986d50983381f61289aab7c81f9a3619359836b7fb27008957dcfc1bb6d0f0322b3858291e5d107c5974e09031a022e124a4db990b0c WHIRLPOOL 6ec92ea8ef6ebf990880f800ce9e633fa44d9339c88d746db2665555117497377ab4c0b717732f26237c04905856ea47fbac37fb75f90fe9ede41b2fc7be268b
-EBUILD ccpn-2.3.1_p131010.ebuild 4685 SHA256 8d98fd88b576a617f7b55d9b0de3ee5441828545e54baebaca1dc2914e188199 SHA512 400ca5f0efa2e5865544f0ca7a810fa3d1825b693b194cd5b58c84dff028c1aa8678c06c6f17a0f1cbfad4eb852c4d102429fba04803fae825e10522849866c4 WHIRLPOOL 5b9da2f81b0909037385988096f37937243a4110b752850c8f6505f06b372a4ce55534ae1a896f86040a17601a293c6caad765924efcd5f6d34236a3b0a851f4
-EBUILD ccpn-2.3.1_p131015.ebuild 4685 SHA256 0215b6ff8c9ee7247a3b4fbb48a9c37f9e7c95623d08afb7a50590134fca5e7e SHA512 fea0e8f85e82d0b4af0551465546cd78226126d7dbb2315949309a09854245db798f9054140f2355b687937c308c5365c672ccb3315cad8bd5e09f99b8a89bdf WHIRLPOOL 68ce200e5efbba9fbee4e0fa95f4a479868881655b51f76a2989a8079d2b30ad05a305270cbc862b9b39f259b9854bb8b6e4b66d7c446526e35ceef71b787984
-EBUILD ccpn-2.3.1_p131018.ebuild 4685 SHA256 b8274f2e758b6e7c3416cb8d424f4c5b5472ecd61ea7b7c59db9194c65e8f26e SHA512 8acb386dff52261169bb0e1f219d14107a8ec28494e61c6263ae71ff968140300a99c74fca495aa75c57cd81e1adfd05ed44f80abcb2d63bfe9a635cff63a35a WHIRLPOOL 39688e03bf1cf9e189c1ad0cf349be0fa6895efffd4afa05f472881dc732f6f3e0ea90e7715b7709be713d20535aa20801a66f6f044894c93d6e1241623dec7a
-EBUILD ccpn-2.3.1_p131107.ebuild 4685 SHA256 e4cf9af1788357b96c1f8e805dbc19be0604af6b34cb983fe0aa735f95b6e290 SHA512 5ad8389563552d00b28ce067b76a592365e6d61a8d6aab85650e2c8031a60bfe912ee0f7bdfec536157e07a3e62bcf82735986e0faf5be3d52778a56d5c1596b WHIRLPOOL 6309bfd9355ed20089341820ff77bb8dc70100ebb937f9604a0222c85d070e4dd88e27693e6ab7c229fffdaa9a36cf531b54feb2c18f302e716191315d6f5318
 EBUILD ccpn-2.3.1_p131119.ebuild 4712 SHA256 304c3c6a3748eaa478d98b3af95668cef50262c5f6c7a872dbace8c828bca594 SHA512 678ea73d436550565828f682cf90382ed7f3fd166f9daea8643998781099a561899e7b6db5a53b691950f0c67440caabf3b087608db9532c17db2ac02e277c0c WHIRLPOOL 5f19462b456bae09a6983351c894735dd5c58f244154c8b30a54bda1d564d9728cb13fe779d47b46d2bbedb4a27fd7d575f73613fdcb10484b694ba6117e3d60
 EBUILD ccpn-2.3.1_p131125.ebuild 4712 SHA256 4b138cb7a05107ae9feeb6a2827fba1f385d32c0c822b49c779d7accc6546b92 SHA512 55f68c3eb94b7de0c70122e834c7a7506b9ea1a2eefc77c747bfe5576817d0f7c6371918f210b18722a13dde46ec7284335eb13631026987b42e9ffd51f29ed1 WHIRLPOOL 3305402cae34b506ce0917456928b905772773943cbb0fd6540c539ae78e784d6111d982e4c16ed87b81293851ff36cab52caea67e24cb316a92c3c7febc3ba9
-MISC ChangeLog 24276 SHA256 29b719a379c033d48068b664abe45fc3c7c116005ba59bac500c5d37f93df03e SHA512 da784e0c44cae6d4e693afa7e136bee85b6674e6da2681db3c1857882bba947c98171262c3f6cf682aba71407a749921e8bfd0631fdeeba4231adfa05550aa56 WHIRLPOOL 91c0f587adb6aed67825d0b9dcf11d8ab2b98589bafb972ab5e15403b3080d1c069e4778f8afa35f5896fda0910108b2d755ccb6e8724021de7510edd5c66fe4
+EBUILD ccpn-2.3.1_p131127.ebuild 4712 SHA256 341087325444fd25568d06905b467f33748d66b3e9f31943251cf40bfa657122 SHA512 3b3dfe6ecc4a117b64e4168ae6131186e6a205b5f1ff29561db0fb0bea9cd775259b86e93df59fdd715ab92b7acd03b98441f2a9ae8ce0a029fb09dc92f0d993 WHIRLPOOL 04e36b31ca326a0f1e6983e0714c560a9d60fd0470341742da51aaa4e131e2f7b6726d8f8ceb89ad8ba43d464376a9684609b85df588481eef474f7b8fdfe957
+MISC ChangeLog 24975 SHA256 78ab1ff618238b5e0ac74cc36982877fc4ec63c6c005a6874c5d5eabb30daf4d SHA512 93845acddb2330782a5f8be761d3b1d7b949610fe196251f8282631da4f4ac5441e2403ee5ba869bacf77487449a774715d97298ea283495295a3b9e8ccd931f WHIRLPOOL 6d676060827d8171467cda1f3f872a7c20509ebaa9e6cfe66ffdcaed0b13ddc580c9169571654c75ec16dc85afeefc79f7836937f57758e62fafe3787c15a662
 MISC metadata.xml 234 SHA256 8297e76ecd2cb828f604e9f138b263179eb84beb640215a0f60d7613eb46bb7f SHA512 0e94c0e6570a9267a39968d81c3b80680ccbc6eebb62199e4830b021a114c94a0de17ef2103cef62b7e27da1f51f225a30abb802aff82140ae6dc43366113d31 WHIRLPOOL fa6d4d90b092953b88ed3ad03e1e8c189296d268b39d13a4b4dcb78f0c4456341e3f1b44eea0860054fee43079179cb7cf7a912acf1fbe693ecdca6d9a65f081
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diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p121125.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p121125.ebuild
deleted file mode 100644
index 18be6d045989..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p121125.ebuild
+++ /dev/null
@@ -1,173 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p121125.ebuild,v 1.1 2012/11/25 09:16:31 jlec Exp $
-
-EAPI=4
-
-PYTHON_DEPEND="2:2.5"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
-	dev-lang/tk[threads]
-	dev-python/numpy
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-pkg_setup() {
-	python_set_active_version 2
-	python_pkg_setup
-}
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|$(PYTHON -a)|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	insinto ${in_path}
-
-	dodir ${in_path}/c
-
-	ebegin "Installing main files"
-		doins -r python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-}
-
-pkg_postinst() {
-	python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
-	python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130110.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130110.ebuild
deleted file mode 100644
index 5db6c4bb9349..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130110.ebuild
+++ /dev/null
@@ -1,174 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130110.ebuild,v 1.2 2013/01/16 11:43:05 jlec Exp $
-
-EAPI=4
-
-PYTHON_DEPEND="2:2.5"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
-	dev-lang/tk[threads]
-	dev-python/numpy
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-pkg_setup() {
-	python_set_active_version 2
-	python_pkg_setup
-}
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|$(PYTHON -a)|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	insinto ${in_path}
-
-	dodir ${in_path}/c
-
-	ebegin "Installing main files"
-		doins -r python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-}
-
-pkg_postinst() {
-	python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
-	python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130116.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130116.ebuild
deleted file mode 100644
index 9e83f3d33e37..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130116.ebuild
+++ /dev/null
@@ -1,174 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130116.ebuild,v 1.1 2013/01/16 11:43:05 jlec Exp $
-
-EAPI=5
-
-PYTHON_DEPEND="2:2.5"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
-	dev-lang/tk[threads]
-	dev-python/numpy
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-pkg_setup() {
-	python_set_active_version 2
-	python_pkg_setup
-}
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|$(PYTHON -a)|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	insinto ${in_path}
-
-	dodir ${in_path}/c
-
-	ebegin "Installing main files"
-		doins -r python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-}
-
-pkg_postinst() {
-	python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
-	python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130213.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130213.ebuild
deleted file mode 100644
index 413bc662f1f8..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130213.ebuild
+++ /dev/null
@@ -1,174 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130213.ebuild,v 1.1 2013/02/13 11:56:42 jlec Exp $
-
-EAPI=5
-
-PYTHON_DEPEND="2:2.5"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
-	dev-lang/tk[threads]
-	dev-python/numpy
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-pkg_setup() {
-	python_set_active_version 2
-	python_pkg_setup
-}
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|$(PYTHON -a)|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	insinto ${in_path}
-
-	dodir ${in_path}/c
-
-	ebegin "Installing main files"
-		doins -r python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-}
-
-pkg_postinst() {
-	python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
-	python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130318-r1.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130318-r1.ebuild
deleted file mode 100644
index ee9c2d362e5b..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130318-r1.ebuild
+++ /dev/null
@@ -1,164 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130318-r1.ebuild,v 1.4 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130318.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130318.ebuild
deleted file mode 100644
index dc1f50c36504..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130318.ebuild
+++ /dev/null
@@ -1,165 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130318.ebuild,v 1.3 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	insinto ${in_path}
-
-	dodir ${in_path}/c
-
-	ebegin "Installing main files"
-		doins -r python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130530.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130530.ebuild
deleted file mode 100644
index c9a33d99809a..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130530.ebuild
+++ /dev/null
@@ -1,164 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130530.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130618.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130618.ebuild
deleted file mode 100644
index 4a1357abbfa5..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130618.ebuild
+++ /dev/null
@@ -1,164 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130618.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.2_p130705.ebuild b/sci-chemistry/ccpn/ccpn-2.2.2_p130705.ebuild
deleted file mode 100644
index 728e8be64ec5..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.2.2_p130705.ebuild
+++ /dev/null
@@ -1,164 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p130705.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p130813.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p130813.ebuild
deleted file mode 100644
index 14bccdbe8dfb..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p130813.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p130813.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz -> analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p130814.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p130814.ebuild
deleted file mode 100644
index 026e648fd537..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p130814.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p130814.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz -> analysis${MY_PV}.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p130822.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p130822.ebuild
deleted file mode 100644
index 352803dd744f..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p130822.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p130822.ebuild,v 1.2 2013/09/05 19:03:41 mgorny Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p130918.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p130918.ebuild
deleted file mode 100644
index de2f53634672..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p130918.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p130918.ebuild,v 1.1 2013/09/18 12:58:56 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131008.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131008.ebuild
deleted file mode 100644
index d2d2d7d230d5..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p131008.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131008.ebuild,v 1.1 2013/10/08 11:25:27 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131010.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131010.ebuild
deleted file mode 100644
index c8184e72408e..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p131010.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131010.ebuild,v 1.1 2013/10/10 10:22:40 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild
deleted file mode 100644
index 9a5eee87b0c5..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131015.ebuild,v 1.1 2013/10/15 10:35:48 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131018.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131018.ebuild
deleted file mode 100644
index 315935f37607..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p131018.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131018.ebuild,v 1.1 2013/10/18 07:07:47 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p131107.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131107.ebuild
deleted file mode 100644
index 68c91b42418b..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p131107.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131107.ebuild,v 1.1 2013/11/07 15:58:24 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="ssl,tk"
-
-inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}r2.tar.gz"
-[[ -n ${PATCHSET} ]] \
-	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	dev-lang/tk[threads]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-tcltk/tix
-	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
-	sci-biology/psipred
-	x11-libs/libXext
-	x11-libs/libX11
-	opengl? (
-		media-libs/freeglut
-		dev-python/pyglet[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
-
-src_prepare() {
-	[[ -n ${PATCHSET} ]] && \
-		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
-
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
-	append-lfs-flags
-
-	sed \
-		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-		-e "s:weights_s:weights:g" \
-		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
-
-	local tk_ver
-	local myconf
-
-	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
-	if use opengl; then
-		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
-		IGNORE_GL_FLAG=""
-		GL_FLAG="-DUSE_GL_TRUE"
-		GL_DIR="${EPREFIX}/usr"
-		GL_LIB="-lglut -lGLU -lGL"
-		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
-		GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
-	else
-		IGNORE_GL_FLAG="-DIGNORE_GL"
-		GL_FLAG="-DUSE_GL_FALSE"
-	fi
-
-	GLUT_NOT_IN_GL=""
-	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
-	rm -rf data model doc license || die
-
-	sed \
-		-e "s|/usr|${EPREFIX}/usr|g" \
-		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
-		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
-		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
-		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
-		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
-		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
-		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
-		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
-		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
-		c/environment_default.txt > c/environment.txt || die
-
-	sed \
-		-e 's:ln -s:cp -f:g' \
-		-i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
-	emake -C c all
-	emake -C c links
-}
-
-src_install() {
-	local libdir
-	local tkver
-	local _wrapper
-
-	find . -name "*.pyc" -type f -delete || die
-
-	libdir=$(get_libdir)
-	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
-	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
-	for wrapper in ${_wrapper}; do
-		sed \
-			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
-		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
-			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
-			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
-			-e "s|gentoopython|${EPYTHON}|g" \
-			-e "s|gentoousr|${EPREFIX}/usr|g" \
-			-e "s|//|/|g" \
-			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
-		dobin "${T}"/${wrapper}
-	done
-
-	local in_path=$(python_get_sitedir)/${PN}
-	local files
-	local pydocs
-
-	pydocs="$(find python -name doc -type d)"
-	rm -rf ${pydocs} || die
-
-	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
-	sed \
-		-e 's|#from __future__|from __future__|g' \
-		-i ${i} || die
-	done
-
-	dodir ${in_path#${EPREFIX}}/c
-
-	ebegin "Installing main files"
-		python_moduleinto ${PN}
-		python_domodule python
-	eend
-
-	ebegin "Adjusting permissions"
-	for _file in $(find "${ED}" -type f -name "*so"); do
-		chmod 755 ${_file}
-	done
-	eend
-	python_optimize
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.3.1_p130930.ebuild b/sci-chemistry/ccpn/ccpn-2.3.1_p131127.ebuild
index efda014d1fa4..685c3b369349 100644
--- a/sci-chemistry/ccpn/ccpn-2.3.1_p130930.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.3.1_p131127.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p130930.ebuild,v 1.1 2013/09/30 10:38:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.3.1_p131127.ebuild,v 1.1 2013/11/27 07:19:33 jlec Exp $
 
 EAPI=5
 
@@ -49,7 +49,7 @@ src_prepare() {
 	[[ -n ${PATCHSET} ]] && \
 		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
 
-	epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+	epatch "${FILESDIR}"/${MY_PV}-parallel.patch "${FILESDIR}"/talosn.patch
 
 	append-lfs-flags
author	Justin Lecher <jlec@gentoo.org>	2013-11-27 07:19:34 +0000
committer	Justin Lecher <jlec@gentoo.org>	2013-11-27 07:19:34 +0000
commit	f1882e101a15c8ede893ee8120e198b12a019378 (patch)
tree	e26cedb261730e138886f24a70f05c5870889aec /sci-chemistry/ccpn
parent	Add ruby20. Drop ppc64 for bug 465948. (diff)
download	historical-f1882e101a15c8ede893ee8120e198b12a019378.tar.gz historical-f1882e101a15c8ede893ee8120e198b12a019378.tar.bz2 historical-f1882e101a15c8ede893ee8120e198b12a019378.zip