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| author |   Justin Lecher <jlec@gentoo.org> | 2010-02-18 22:00:44 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-02-18 22:00:44 +0000 |
| commit | c32a26f0048515d110fcf87d4a22a8b3761c5570 (patch) | |
| tree | 452f3f5d6ba6c7951eb46dc9339f4440425c6628 /sci-chemistry/pymol-plugins-cealign | |
| parent | Raise intltool depend to 0.41.0 wrt #295819, thanks to Diego E. Pettenò for ... (diff) | |
| download | historical-c32a26f0048515d110fcf87d4a22a8b3761c5570.tar.gz historical-c32a26f0048515d110fcf87d4a22a8b3761c5570.tar.bz2 historical-c32a26f0048515d110fcf87d4a22a8b3761c5570.zip | |
Moved in from sci overlay
Package-Manager: portage-2.2_rc62/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry/pymol-plugins-cealign')
4 files changed, 87 insertions, 0 deletions
diff --git a/sci-chemistry/pymol-plugins-cealign/ChangeLog b/sci-chemistry/pymol-plugins-cealign/ChangeLog new file mode 100644 index 000000000000..6ca4ace0403f --- /dev/null +++ b/sci-chemistry/pymol-plugins-cealign/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-chemistry/pymol-plugins-cealign +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog,v 1.1 2010/02/18 22:00:44 jlec Exp $ + +*pymol-plugins-cealign-0.9 (18 Feb 2010) + + 18 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org> + +pymol-plugins-cealign-0.9.ebuild, +metadata.xml: + New addition, for further reading: + Shindyalov IN, Bourne PE. Protein structure alignment by incremental + combinatorial extension (CE) of the optimal path. Protein Eng. 1998 + Sep;11(9):739-47. PMID: 9796821 [PubMed - indexed for MEDLINE] + diff --git a/sci-chemistry/pymol-plugins-cealign/Manifest b/sci-chemistry/pymol-plugins-cealign/Manifest new file mode 100644 index 000000000000..9783ca6347ae --- /dev/null +++ b/sci-chemistry/pymol-plugins-cealign/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST Cealign-0.9.zip 766905 RMD160 fe7ee7fdcf8a7ca908c69e7de642318b3ec34867 SHA1 c57f8c1b46c192f276b1011f70c032cb7d2d5fb6 SHA256 87eee30c7757daae4baa3451246d813165f2317600da8d7bcde680ba0e822176 +EBUILD pymol-plugins-cealign-0.9.ebuild 1202 RMD160 b2665c5553ecd3783aa67858a494c58d1105f31b SHA1 f3c6323617ebf0f3c81302fbf3493bd2d4d473ee SHA256 0da085b14de97781eed17803561c7a7c77cbb78ec10b66df4f1f94a6737e19f0 +MISC ChangeLog 633 RMD160 7abb7503a64b04d121617ea09721f259fb737220 SHA1 4578af18e85f5c0e49ac2442e20cdcb50f4cb0d3 SHA256 5c358eba15b640e8d8a10b054ea18173430466281204b6131f116ee35de4d001 +MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.14 (GNU/Linux) + +iEYEARECAAYFAkt9uJIACgkQgAnW8HDreRbYHQCePNb9BbzxWqSsN/YII95eP9eo +j1EAn1oPoQ3c2qeI4QGf1V+yyfd9RNF7 +=kB9l +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/pymol-plugins-cealign/metadata.xml b/sci-chemistry/pymol-plugins-cealign/metadata.xml new file mode 100644 index 000000000000..c6856dc7f2cf --- /dev/null +++ b/sci-chemistry/pymol-plugins-cealign/metadata.xml @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +</pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild b/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild new file mode 100644 index 000000000000..9dbdccab69af --- /dev/null +++ b/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild,v 1.1 2010/02/18 22:00:44 jlec Exp $ + +EAPI="3" + +SUPPORT_PYTHON_ABIS="1" + +inherit distutils + +DESCRIPTION="The CE algorithm is a fast and accurate protein structure alignment algorithm." +HOMEPAGE="http://www.pymolwiki.org/index.php/Cealign" +SRC_URI="http://www.pymolwiki.org/images/0/03/Cealign-${PV}.zip" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~x86 ~amd64 ~amd64-linux" +IUSE="" + +DEPEND=" + dev-python/numpy + ~sci-chemistry/pymol-1.2.2" +RDEPEND="" +RESTRICT_PYTHON_ABIS="2.4 3.*" + +S=${WORKDIR}/cealign-0.9 + +src_prepare() { + python_copy_sources +} + +src_install(){ + mtype=$(uname -m) + + distutils_src_install + + installation() { + insinto $(python_get_sitedir)/cealign + doins qkabsch.py cealign.py || die + } + python_execute_function -s installation + + cat >> "${T}"/pymolrc <<- EOF + run "${EPREFIX}/$(python_get_sitedir -f)/cealign/qkabsch.py" + run "${EPREFIX}/$(python_get_sitedir -f)/cealign/cealign.py" + EOF + + insinto ${PYMOL_PATH} + doins "${T}"/pymolrc || die + + dodoc CHANGES doc/cealign.pdf || die +} |