diff options
author | Justin Lecher <jlec@gentoo.org> | 2010-10-20 06:32:26 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2010-10-20 06:32:26 +0000 |
commit | 2115a563f437fa5ae1a603285770099f4429a768 (patch) | |
tree | 95242ed22e21e7b28229628d6d5f740a6e1bf2c7 /sci-chemistry/refmac | |
parent | Initital addition (diff) | |
download | historical-2115a563f437fa5ae1a603285770099f4429a768.tar.gz historical-2115a563f437fa5ae1a603285770099f4429a768.tar.bz2 historical-2115a563f437fa5ae1a603285770099f4429a768.zip |
Version Bump, removed old
Package-Manager: portage-2.2_rc98/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry/refmac')
-rw-r--r-- | sci-chemistry/refmac/ChangeLog | 9 | ||||
-rw-r--r-- | sci-chemistry/refmac/Manifest | 15 | ||||
-rw-r--r-- | sci-chemistry/refmac/files/5.6.0086-allow-dynamic-linking.patch | 241 | ||||
-rw-r--r-- | sci-chemistry/refmac/refmac-5.6.0084.ebuild | 71 | ||||
-rw-r--r-- | sci-chemistry/refmac/refmac-5.6.0086.ebuild (renamed from sci-chemistry/refmac/refmac-5.6.0083.ebuild) | 2 |
5 files changed, 257 insertions, 81 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog index df2869d0f704..dd9092d9c7c4 100644 --- a/sci-chemistry/refmac/ChangeLog +++ b/sci-chemistry/refmac/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-chemistry/refmac # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.18 2010/09/30 08:06:44 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.19 2010/10/20 06:32:26 jlec Exp $ + +*refmac-5.6.0086 (20 Oct 2010) + + 20 Oct 2010; Justin Lecher <jlec@gentoo.org> + +files/5.6.0086-allow-dynamic-linking.patch, -refmac-5.6.0083.ebuild, + -refmac-5.6.0084.ebuild, +refmac-5.6.0086.ebuild: + Version Bump, removed old *refmac-5.6.0085 (30 Sep 2010) diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest index e2c031a2eb4d..4a40430763f7 100644 --- a/sci-chemistry/refmac/Manifest +++ b/sci-chemistry/refmac/Manifest @@ -11,24 +11,23 @@ AUX 5.6.0081-allow-dynamic-linking.patch 7251 RMD160 aba9b2cd1ace40020b59c6f320b AUX 5.6.0083-allow-dynamic-linking.patch 9977 RMD160 d51728adbfe593832f71a6fe93593cd9affca7c3 SHA1 9a9571b615e444ac67b74c0f3a1b637fcfcf834e SHA256 b470bb10e67b30f5024e2b9c171583cf018b6a554e18115a570297e06905f26d AUX 5.6.0084-allow-dynamic-linking.patch 9851 RMD160 8e6a6116bc824452d9c9e377ca99fd345e0ba23f SHA1 b384d5e2d875d0d87dc62e250602d47a3658c0e8 SHA256 088fe80b3d7eb2910819f8b0f5fa83a1f25620fed88b7c4df2818a6edf440cb1 AUX 5.6.0085-allow-dynamic-linking.patch 10030 RMD160 76ce00e00d978274cb1b5b585d583c27fff30e3f SHA1 53e2cac876c7d5420a6f7872a0dc8f1eeb9bc74d SHA256 c14115b5d50c7312c4e2cf5ca39f3c53810093555352f3d1bedd97a4aff38e4c -DIST refmac5.6_source_v5.6.0083.tar.gz 1306548 RMD160 d12fc7462f817ef2db8ec6cf7a168acf59021798 SHA1 0fa8b582bfe5df5da7842b9cf5305a0df2aff015 SHA256 90e88281cf2b380f186056e9d6b367188edb76a40e065ad54df9b44a3e924fb7 -DIST refmac5.6_source_v5.6.0084.tar.gz 1277110 RMD160 ed93e0df739bb921eeafaed3480a00831d4cc142 SHA1 d739a960e75069ab951403220937042b320ffb08 SHA256 25449618d2fb1f20dc76d27c9fc24f04cddf640f0bdd48690134ae71a9b11fec +AUX 5.6.0086-allow-dynamic-linking.patch 10030 RMD160 76ce00e00d978274cb1b5b585d583c27fff30e3f SHA1 53e2cac876c7d5420a6f7872a0dc8f1eeb9bc74d SHA256 c14115b5d50c7312c4e2cf5ca39f3c53810093555352f3d1bedd97a4aff38e4c DIST refmac5.6_source_v5.6.0085.tar.gz 1276744 RMD160 968d0c18039a5ae19472df3c2b13a7f3c95df99b SHA1 56141b2c1c08194b24d00e444b802c86574505b1 SHA256 f4bc6a02f36c7a57e2a5ef03eb4040854806ff62f56b97cd2c9335ab73e9df70 +DIST refmac5.6_source_v5.6.0086.tar.gz 1276868 RMD160 dae01bd49871ff483f8bc8058b191f1bd96612aa SHA1 4d0e0f30adb110cc3976aefcf5c0e08e80cf7045 SHA256 37a46cdfd1e0db31cd312bf267fc2983bf6683d0b775e32e3535d00601e70f69 DIST refmac_5.5.0109.tar.gz 1326779 RMD160 3b603c13638407cceb907bd43ac0a971b587c116 SHA1 3cc35a55df71bac4de3eec9cf0e690e221ae3c86 SHA256 38d416c94e1f86a0676d48d7ddaeb4af272970b8cd6b084e70aa38481327c59e DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605 EBUILD refmac-5.5.0109.ebuild 1760 RMD160 7d38ec3480c3716698a1926815414c02dae4fe32 SHA1 b4d08deabb66f10f2a40f289249c568b8002c536 SHA256 8a790eeb7b8510d5f2780470a900f7618368dc48c45d1e2599cbf6bf8cc64fd8 EBUILD refmac-5.5.0110-r1.ebuild 1787 RMD160 9017aa6e2f7d9d764904eeeb624c448025583701 SHA1 9252ba8e478ec48e5bba99678c8dde60f4d4ac2f SHA256 bdf76b64a98146b57cd6037473206041a181f893f19b6d0275b950d7560aa1a6 EBUILD refmac-5.5.0110.ebuild 1805 RMD160 80e546666e72290365c99c542abcef90a3394bb8 SHA1 a1731838742679b66984018fb8d25b8dbb11ae29 SHA256 8f825fc7f75854d631d6c6b037398237b8231a9fdc162e9ab1c6a46490b0a957 -EBUILD refmac-5.6.0083.ebuild 1786 RMD160 b86ad9354ba7a803bac78beca63daa67baad0577 SHA1 b236b1587a35e57db462c112bb4edd641c36f805 SHA256 5bb09e103c97a9458f99330ed306b4bfee3e86b9f6fee6787ac4af532d13464b -EBUILD refmac-5.6.0084.ebuild 1786 RMD160 b298c9b38c48d3d2c4e8c4f243aa2a8a58c878c6 SHA1 fcb4041ee7bbb41a59f70baba14f183c88e049f0 SHA256 064624569640468c15cc811de90e0589314c8cbb801f065b4104dbdcf249d3c1 EBUILD refmac-5.6.0085.ebuild 1786 RMD160 3f5bd9e12f1ad100a499794d1244b52a8b1bfdd2 SHA1 69ba8bd099d567ac209dfdc10e6505ffd97d9710 SHA256 d09f9c11f05ed5fd625bd04304538af95b796143f2f064cf5f1ec4f141f9b48b -MISC ChangeLog 3228 RMD160 03a5b9538d553fc58d334519f78dd9d3a69c7eff SHA1 e6afd31849b8672f9b118d1cc803e1650a29f7d7 SHA256 d1c8b22fe903526874dc39e93a2b68737db9676b270ebc51cd9a9be00d936894 +EBUILD refmac-5.6.0086.ebuild 1786 RMD160 2ed810e339b67e19c32cb5c08f51caffa0e4a6db SHA1 19af34f8491c8250033c5130ac97c9fb39b98269 SHA256 c12923fcaf984a2fd8506f00c475e74059bbffa8934dd0b33916359504b37a93 +MISC ChangeLog 3460 RMD160 7fa5280ce2a8217a7e2eede81cf812ed52025ff4 SHA1 a5ffa654055c68197a0258503901eadebd282ad7 SHA256 86c5870d4c3da404d06089d1bbdb1c5d95a0d709f966a4a54a70efc3721b0510 MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.16 (GNU/Linux) -iEYEARECAAYFAkykRQwACgkQgAnW8HDreRbHkgCgnrAQ9buRcbBhvEygfjwHwrFe -pgoAn2aLYXQGPZiLcrfUeSgpuMBNl9A0 -=hK7/ +iEYEARECAAYFAky+jQIACgkQgAnW8HDreRZEEQCgtBoO55rueQAgEhEnGXWFsyxs +cfwAmgKQrYCzdS68lxu0f8YEqDqgSQEf +=7qdp -----END PGP SIGNATURE----- diff --git a/sci-chemistry/refmac/files/5.6.0086-allow-dynamic-linking.patch b/sci-chemistry/refmac/files/5.6.0086-allow-dynamic-linking.patch new file mode 100644 index 000000000000..2134cc63ec67 --- /dev/null +++ b/sci-chemistry/refmac/files/5.6.0086-allow-dynamic-linking.patch @@ -0,0 +1,241 @@ +diff --git a/makefile_refmac.inc1 b/makefile_refmac.inc1 +index 5263df1..6b96e5e 100644 +--- a/makefile_refmac.inc1 ++++ b/makefile_refmac.inc1 +@@ -90,9 +90,7 @@ messy_pdb.o \ + bridge.o \ + i0.o \ + i1.o \ +-chbevl.o \ +-$(LLIBCIF) \ +-$(LLIBLAPACK) ++chbevl.o + + + SUBL = \ +@@ -126,9 +124,7 @@ cell_symm_subrs.o \ + iheap_sort.o \ + linalgebra.o \ + math_refmac.o \ +-subnumrec.o \ +-$(LLIBLAPACK) \ +-$(LLIBCCP) ++subnumrec.o + + #-------------------------------------------------------------------------------- + +@@ -153,33 +149,32 @@ rharvest77mod.o: rharvest77mod.f + twin77mod.o: twin77mod.f + $(FC) $(FFLAGS) -c twin77mod.f + ++max_with_twins.o: restr_files.o max_with_twins.f ++ $(FC) $(FFLAGS) -c max_with_twins.f + +-max_with_twins.o: restr_files.f90 max_with_twins.f +- $(FC) $(FFLAGS) -c restr_files.f90 max_with_twins.f +- +-merohedr_twin.o: restr_files.f90 merohedr_twin.f +- $(FC) $(FFLAGS) -c restr_files.f90 merohedr_twin.f ++merohedr_twin.o: restr_files.o merohedr_twin.f ++ $(FC) $(FFLAGS) -c merohedr_twin.f + +-ls_scaling_twin_save.o: restr_files.f90 ls_scaling_twin_save.f +- $(FC) $(FFLAGS) -c restr_files.f90 ls_scaling_twin_save.f ++ls_scaling_twin_save.o: restr_files.o ls_scaling_twin_save.f ++ $(FC) $(FFLAGS) -c ls_scaling_twin_save.f + +-ml_params_refine.o: restr_files.f90 ml_params_refine.f +- $(FC) $(FFLAGS) -c restr_files.f90 ml_params_refine.f ++ml_params_refine.o: restr_files.o ml_params_refine.f ++ $(FC) $(FFLAGS) -c ml_params_refine.f + +-optimise_solvent_all.o: optimise_solvent_all.f90 ++optimise_solvent_all.o: optimise_solvent_all.f90 atomf77mod.o + $(FC) $(FFLAGS) -c optimise_solvent_all.f90 + +-ncs_rest.o: restr_files.f90 ncs_ncs_generate.f90 ncs_rest.f +- $(FC) $(FFLAGS) -c restr_files.f90 ncs_ncs_generate.f90 ncs_rest.f ++ncs_rest.o: restr_files.o ncs_ncs_generate.o ncs_rest.f ++ $(FC) $(FFLAGS) -c ncs_rest.f + +-ncs_ncs_generate.o: ncs_ncs_generate.f90 align_refmac.f90 +- $(FC) $(FFLAGS) -c ncs_ncs_generate.f90 align_refmac.f90 ++ncs_ncs_generate.o: ncs_ncs_generate.f90 align_refmac.o ++ $(FC) $(FFLAGS) -c ncs_ncs_generate.f90 + +-lsq_exp2.o: restr_files.f90 dist_routines.f90 ncs_simil.f90 ridge.f90 local_tls.f90 lsq_exp2.f +- $(FC) $(FFLAGS) -c restr_files.f90 dist_routines.f90 ncs_simil.f90 ridge.f90 local_tls.f90 lsq_exp2.f ++lsq_exp2.o: restr_files.o dist_routines.o ncs_simil.o ridge.o local_tls.o lsq_exp2.f ++ $(FC) $(FFLAGS) -c lsq_exp2.f + +-vdw_and_contacts.o: vdw_and_contacts.f local_tls.f90 ridge.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 ridge.f90 local_tls.f90 vdw_and_contacts.f ++vdw_and_contacts.o: vdw_and_contacts.f local_tls.o ridge.o restr_files.o ++ $(FC) $(FFLAGS) -c vdw_and_contacts.f + + dist_routines.o: dist_routines.f90 + $(FC) $(FFLAGS) -c dist_routines.f90 +@@ -193,109 +188,110 @@ ridge.o: ridge.f90 + align_refmac.o: align_refmac.f90 + $(FC) $(FFLAGS) -c align_refmac.f90 + +-rigid_allocate.o: restr_files.f90 rigid_allocate.f +- $(FC) $(FFLAGS) -c restr_files.f90 rigid_allocate.f ++rigid_allocate.o: restr_files.o rigid_allocate.f ++ $(FC) $(FFLAGS) -c rigid_allocate.f + +-tls_allocate.o: restr_files.f90 tls_allocate.f +- $(FC) $(FFLAGS) -c restr_files.f90 tls_allocate.f ++tls_allocate.o: restr_files.o tls_allocate.f ++ $(FC) $(FFLAGS) -c tls_allocate.f + +-hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 ncs_simil.f90 local_tls.f90 hkon_secder_tch.f ++hkon_secder_tch.o: hkon_secder_tch.f local_tls.o ncs_simil.o optimise_solvent_all.o restr_files.o ++ $(FC) $(FFLAGS) -c hkon_secder_tch.f + +-oppro_allocate.o: oppro_allocate.f filter_params.f90 optimise_solvent_all.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 filter_params.f90 oppro_allocate.f ++oppro_allocate.o: oppro_allocate.f filter_params.o optimise_solvent_all.o restr_files.o ++ $(FC) $(FFLAGS) -c oppro_allocate.f + +-read_extra_restraints.o: restr_files.f90 read_extra_restraints.f +- $(FC) $(FFLAGS) -c restr_files.f90 read_extra_restraints.f ++read_extra_restraints.o: restr_files.o read_extra_restraints.f ++ $(FC) $(FFLAGS) -c read_extra_restraints.f + +-coords.o: coords.f90 atomf77mod.f +- $(FC) $(FFLAGS) -c atomf77mod.f coords.f90 ++coords.o: coords.f90 atomf77mod.o ++ $(FC) $(FFLAGS) -c coords.f90 + +-refpre_twin.o: refpre_twin.f coords.f90 automorphism.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 coords.f90 automorphism.f90 refpre_twin.f ++refpre_twin.o: refpre_twin.f coords.o automorphism.o restr_files.o ++ $(FC) $(FFLAGS) -c refpre_twin.f + +-decide_twin_opers_0.o: restr_files.f90 decide_twin_opers_0.f +- $(FC) $(FFLAGS) -c restr_files.f90 decide_twin_opers_0.f ++decide_twin_opers_0.o: restr_files.o decide_twin_opers_0.f ++ $(FC) $(FFLAGS) -c decide_twin_opers_0.f + + automorphism.o: automorphism.f90 + $(FC) $(FFLAGS) -c automorphism.f90 + +-mtz_write_twin.o: mtz_write_twin.f filter_params.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 filter_params.f90 mtz_write_twin.f ++mtz_write_twin.o: mtz_write_twin.f filter_params.o restr_files.o ++ $(FC) $(FFLAGS) -c mtz_write_twin.f + + filter_params.o: filter_params.f90 + $(FC) $(FFLAGS) -c filter_params.f90 + +-rcard_tor1.o: rcard_tor1.f filter_params.f90 local_tls.f90 ridge.f90 optimise_solvent_all.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 filter_params.f90 local_tls.f90 ridge.f90 rcard_tor1.f ++rcard_tor1.o: rcard_tor1.f filter_params.o local_tls.o ridge.o optimise_solvent_all.o restr_files.o ++ $(FC) $(FFLAGS) -c rcard_tor1.f + +-inout_routines.o: restr_files.f90 inout_routines.f +- $(FC) $(FFLAGS) -c restr_files.f90 inout_routines.f ++inout_routines.o: restr_files.o inout_routines.f ++ $(FC) $(FFLAGS) -c inout_routines.f + +-local_tls.o: local_tls.f90 linalgebra_f90.f90 +- $(FC) $(FFLAGS) -c linalgebra_f90.f90 local_tls.f90 ++local_tls.o: local_tls.f90 linalgebra_f90.o ++ $(FC) $(FFLAGS) -c local_tls.f90 + + linalgebra_f90.o: linalgebra_f90.f90 + $(FC) $(FFLAGS) -c linalgebra_f90.f90 + +-make_refmac_dummy.o: make_refmac_dummy.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 make_refmac_dummy.f ++make_refmac_dummy.o: make_refmac_dummy.f optimise_solvent_all.o ++ $(FC) $(FFLAGS) -c make_refmac_dummy.f + +-ml_scaling_double.o: ml_scaling_double.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 ml_scaling_double.f ++ml_scaling_double.o: ml_scaling_double.f optimise_solvent_all.o ++ $(FC) $(FFLAGS) -c ml_scaling_double.f + +-refall_twin.o: refall_twin.f optimise_solvent_all.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 refall_twin.f ++refall_twin.o: refall_twin.f optimise_solvent_all.o restr_files.o ++ $(FC) $(FFLAGS) -c refall_twin.f + +-rharvest.o: rharvest.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 rharvest.f ++rharvest.o: rharvest.f optimise_solvent_all.o ++ $(FC) $(FFLAGS) -c rharvest.f + +-solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 solvent_contr_mask.f ++solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.o ++ $(FC) $(FFLAGS) -c solvent_contr_mask.f + +-subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90 restr_files.f90 +- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 subag_scale_hessian.f ++subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.o restr_files.o ++ $(FC) $(FFLAGS) -c subag_scale_hessian.f + +-subcf_scale1.o: subcf_scale1.f optimise_solvent_all.f90 +- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 subcf_scale1.f ++subcf_scale1.o: subcf_scale1.f optimise_solvent_all.o ++ $(FC) $(FFLAGS) -c subcf_scale1.f + +-bvalue_routines.o: bvalue_routines.f90 restr_files.f90 atomf77mod.f +- $(FC) $(FFLAGS) -c restr_files.f90 atomf77mod.f bvalue_routines.f90 ++bvalue_routines.o: bvalue_routines.f90 restr_files.o atomf77mod.o ++ $(FC) $(FFLAGS) -c bvalue_routines.f90 + +-refmac_xml.o: refmac_xml.f optimise_solvent_all.f90 restr_files.f90 bvalue_routines.f90 +- $(FC) $(FFLAGS) -c bvalue_routines.f90 restr_files.f90 optimise_solvent_all.f90 refmac_xml.f ++refmac_xml.o: refmac_xml.f optimise_solvent_all.o restr_files.o bvalue_routines.o ++ $(FC) $(FFLAGS) -c refmac_xml.f + + hkl_pack.o: hkl_pack.f90 + $(FC) $(FFLAGS) -c hkl_pack.f90 + +-subvag.o: subvag.f hkl_pack.f90 ++subvag.o: subvag.f hkl_pack.o + $(FC) $(FFLAGS) -c hkl_pack.f90 subvag.f + + refmac: $(SUBR) +- $(FC) $(FFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) + +-mol2_file.o: mol2_file.f odb_files.f90 +- $(FC) $(FFLAGS) -c odb_files.f90 mol2_file.f ++mol2_file.o: mol2_file.f odb_files.o ++ $(FC) $(FFLAGS) -c mol2_file.f + +-odb_files.o: odb_files.f90 elements_module.f90 enerf77mod.f +- $(FC) $(FFLAGS) -c elements_module.f90 enerf77mod.f odb_files.f90 ++odb_files.o: odb_files.f90 elements_module.o enerf77mod.o ++ $(FC) $(FFLAGS) -c enerf77mod.f odb_files.f90 + + elements_module.o: elements_module.f90 + $(FC) $(FFLAGS) -c elements_module.f90 + +-make_lib2.o: make_lib2.f odb_files.f90 +- $(FC) $(FFLAGS) -c odb_files.f90 make_lib2.f ++make_lib2.o: make_lib2.f odb_files.o ++ $(FC) $(FFLAGS) -c make_lib2.f + + pdb2libcheck.o: pdb2libcheck.f90 + $(FC) $(FFLAGS) -c pdb2libcheck.f90 + +-libcheck.o: libcheck.f elements_module.f90 pdb2libcheck.f90 +- $(FC) $(FFLAGS) -c elements_module.f90 pdb2libcheck.f90 libcheck.f ++libcheck.o: libcheck.f elements_module.o pdb2libcheck.o ++ $(FC) $(FFLAGS) -c libcheck.f + + libcheck: $(SUBL) +- $(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) + + clean: + /bin/rm *.o + + bridge.o: bridge.cpp llhood.h covmat.h Gauss.h tabfunc.h ++ $(CXX) $(CXXFLAGS) -c bridge.cpp diff --git a/sci-chemistry/refmac/refmac-5.6.0084.ebuild b/sci-chemistry/refmac/refmac-5.6.0084.ebuild deleted file mode 100644 index ea210304031b..000000000000 --- a/sci-chemistry/refmac/refmac-5.6.0084.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0084.ebuild,v 1.1 2010/09/27 15:09:53 jlec Exp $ - -EAPI="2" - -inherit fortran base toolchain-funcs versionator - -MY_PV="$(get_version_component_range 1-2)_source_v${PV}" - -DESCRIPTION="Macromolecular crystallographic refinement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" -SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz - test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" - -SLOT="0" -LICENSE="ccp4" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - sci-libs/ccp4-libs - sci-libs/mmdb - >sci-libs/monomer-db-1 - virtual/blas - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}" - -PATCHES=( - "${FILESDIR}"/${PV}-allow-dynamic-linking.patch - ) - -src_prepare() { - base_src_prepare - use test && epatch "${FILESDIR}"/5.5-test.log.patch -} - -src_compile() { - emake \ - FC=$(tc-getFC) \ - CC=$(tc-getCC) \ - CXX=$(tc-getCXX) \ - COPTIM="${CFLAGS}" \ - FOPTIM="${FFLAGS:- -O2}" \ - VERSION="" \ - XFFLAGS="-fno-second-underscore" \ - LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ - LLIBLAPACK="$(pkg-config --libs lapack blas)" \ - || die -} - -src_test() { - einfo "Starting tests ..." - export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" - export CCP4_TEST="${WORKDIR}"/test-framework - export CCP4_SCR="${T}" - ln -sf refmac "${S}"/refmac5 - sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb - ccp4-run-thorough-tests -v test_refmac5 || die -} - -src_install() { - for i in refmac libcheck; do - exeinto /usr/libexec/ccp4/bin/ - doexe ${i} || die - dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} - done - dosym refmac /usr/bin/refmac5 || die -} diff --git a/sci-chemistry/refmac/refmac-5.6.0083.ebuild b/sci-chemistry/refmac/refmac-5.6.0086.ebuild index 4a83de4cf265..3d4040027147 100644 --- a/sci-chemistry/refmac/refmac-5.6.0083.ebuild +++ b/sci-chemistry/refmac/refmac-5.6.0086.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0083.ebuild,v 1.1 2010/09/24 10:55:08 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0086.ebuild,v 1.1 2010/10/20 06:32:26 jlec Exp $ EAPI="2" |