sci-chemistry/tm-align: Version Bump

Package-Manager: portage-2.2.0_alpha121/cvs/Linux x86_64

4 files changed, 47 insertions, 13 deletions

diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog
index 03bc93a72827..c73b92b8ada0 100644
--- a/sci-chemistry/tm-align/ChangeLog
+++ b/sci-chemistry/tm-align/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.1 2012/03/21 12:18:47 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.2 2012/08/13 20:06:36 jlec Exp $
+
+*tm-align-20120707 (13 Aug 2012)
+
+  13 Aug 2012; Justin Lecher <jlec@gentoo.org> tm-align-20120124.ebuild,
+  +tm-align-20120707.ebuild:
+  Version Bump
 
 *tm-align-20120124 (21 Mar 2012)
 
diff --git a/sci-chemistry/tm-align/Manifest b/sci-chemistry/tm-align/Manifest
index a3b2e30b02f0..cc1701c396c4 100644
--- a/sci-chemistry/tm-align/Manifest
+++ b/sci-chemistry/tm-align/Manifest
@@ -1,15 +1,18 @@
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+AUX CMakeLists.txt 182 SHA256 e6543e2fba46dc09d1892106b1d9c154485ee269d2b88c16a1973605fae44b53 SHA512 1e77edbfb2184e11c09fc2133eb40bd9d4b2fb04a30139134939482f4e817ebfa5c316e8d75a6fd5aa866ef1f6f56d65df924dc41cfb698330943e0bc433948d WHIRLPOOL 370a6b0e2ba20b7c7316aaba34b6dd6962673014fa7d2aee8ae04630b98abb24f5302eca80ea4c92d84fea149c98003d4b5c1ac44266a488cc937f06f51f6192
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+DIST TMtools20120707.tar.gz 928304 SHA256 c6558e67857ceffb3059a892f68a70bc0fad1a91d8f3c38292900af189d5492c SHA512 2c94af7c17a00f7a250b59614fedd753c88d4fa36aea8ac615ed25f09deeb798740b464103fe014820e488fe56f3839d2e591db052230841f2523fbfe5038e3e WHIRLPOOL 443f8d181f7a9b59147ff6120fb7b2ae517b85019389168931a6b28fe443dde3245fb7795dd66f6f1cfbbd175b4b8f61ae2d1a1c75142517cfae152d8008be64
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diff --git a/sci-chemistry/tm-align/tm-align-20120124.ebuild b/sci-chemistry/tm-align/tm-align-20120124.ebuild
index a6f7c565e0bd..abf7cbe84998 100644
--- a/sci-chemistry/tm-align/tm-align-20120124.ebuild
+++ b/sci-chemistry/tm-align/tm-align-20120124.ebuild
@@ -1,10 +1,10 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20120124.ebuild,v 1.1 2012/03/21 12:18:47 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20120124.ebuild,v 1.2 2012/08/13 20:06:36 jlec Exp $
 
 EAPI=4
 
-inherit cmake-utils fortran-2
+inherit cmake-utils flag-o-matic fortran-2
 
 DESCRIPTION="Quick & Accurate Structural Alignment"
 HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/"
diff --git a/sci-chemistry/tm-align/tm-align-20120707.ebuild b/sci-chemistry/tm-align/tm-align-20120707.ebuild
new file mode 100644
index 000000000000..2314e4daf232
--- /dev/null
+++ b/sci-chemistry/tm-align/tm-align-20120707.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20120707.ebuild,v 1.1 2012/08/13 20:06:36 jlec Exp $
+
+EAPI=4
+
+inherit cmake-utils flag-o-matic fortran-2
+
+DESCRIPTION="Quick & Accurate Structural Alignment"
+HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/"
+SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="static custom-cflags"
+
+S="${WORKDIR}"
+
+src_prepare() {
+	cp "${FILESDIR}"/CMakeLists.txt . || die
+	use static && append-fflags -static && append-ldflags -static
+	# recommended by upstream
+	use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
+}