Removed all non PythonABI compatible ebuilds

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

5 files changed, 10 insertions, 499 deletions

diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog
index ad9cdc020285..ac6fce09aae6 100644
--- a/sci-chemistry/vmd/ChangeLog
+++ b/sci-chemistry/vmd/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/vmd
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.28 2010/05/18 07:22:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.29 2010/05/28 18:21:25 jlec Exp $
+
+  28 May 2010; Justin Lecher <jlec@gentoo.org> -vmd-1.8.6.ebuild,
+  -vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild:
+  Removed all non PythonABI compatible ebuilds
 
 *vmd-1.8.7-r1 (18 May 2010)
 
diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest
index 19a8a2c5c6ff..20d528f0e787 100644
--- a/sci-chemistry/vmd/Manifest
+++ b/sci-chemistry/vmd/Manifest
@@ -11,18 +11,14 @@ AUX vmd-1.8.7-gentoo.patch 39209 RMD160 3078ba58c691684cd342c7ea3fbf8e0d23f77399
 AUX vmd-1.8.7-use-bash-startup.patch 717 RMD160 f061a9e4c90115b3eab42d754e66f62240b3fb69 SHA1 73001ba99f97ce484610593b50bafcbed7943889 SHA256 3f9a8c9f8f0f461b8dd3985d71265c942e655e56e1745b75c25f547821d4228c
 AUX vmd.desktop 296 RMD160 83dbf38b9b90b42b1b913a8a4a572d5570e55f2e SHA1 077d414e2a1ba3fcbdac02559b9efdfeb26fa9dd SHA256 5008ea2c950955f416061a14c35a2b2146df29df290b7f5b1e2f3c48d7ce7d8d
 AUX vmd.png 8365 RMD160 faea1a2dba00d47b39c06d303a18420a89489e10 SHA1 61ee9b247b540540d99d69fbebe685464a2eb105 SHA256 d83f568615ad954f582d986975997186fdacfd8f79c30f49d6aaf07ba2eb6aa7
-DIST vmd-1.8.6.src.tar.gz 18045341 RMD160 66f8ee5a0313000ea8dd3cb79881fd26a2836a79 SHA1 62ceaab06c7fec7c2c8e9a2d7f08c83ba662679d SHA256 fe2bcf7ffea1ed6b3a7f2402d6e1cb1d6def588a8b09a5d0943c0a9f3426ead2
 DIST vmd-1.8.7.src.tar.gz 23853864 RMD160 1c4751552d7b3f376f91a4b28ee9d4a028ded01a SHA1 409b6f8959d551f581991073f98885b47c21c25c SHA256 72fe2fb7eff4c805a886ea929c7e143a3a1be57cc817b5d1719d29e591d80316
-EBUILD vmd-1.8.6-r1.ebuild 4386 RMD160 5e23cb4d0be86df7327d711ed47c984b81a4fb57 SHA1 1ceaf844c5def28b411a7743008abfe11243c5a1 SHA256 ee63e4ef92723828a5825d9ad70981baafa06db7b0db64b7a1dcd8e8fecd7783
-EBUILD vmd-1.8.6.ebuild 4299 RMD160 1e4bee161856b5996bbd1b61de1d5575c030804e SHA1 1a943a032e8699ea41b7aa135a2550e05fbfc77a SHA256 d5f4d08855fc4095bfd58099aae3a3e56c1db064e06bf9569f8ef71334f4734a
 EBUILD vmd-1.8.7-r1.ebuild 5232 RMD160 594c5886675af825647c8b32e3f6a5562607d368 SHA1 6e1745e0549777d384e64df2dbdf05536c721138 SHA256 6395a127f2ab2bb86252b64ba5f0aa297be9109f01c26c7961baef89fc90f08d
-EBUILD vmd-1.8.7.ebuild 4773 RMD160 cd5e31abe7ce16e474dfdaf1e1bcef4f3fa07ea8 SHA1 0dc141b0c90856be4bcca21dc0243965f6639a54 SHA256 5c117c17a4843591e2b2049e93bd09cad497e3f27da7cc24539b693d947a5782
-MISC ChangeLog 5445 RMD160 e6430c0af370aed70321a98ac56ae1400aa79c24 SHA1 70ccb402d82f649ff38a672b94d5319d65b42cd5 SHA256 6290b5ca0fbeee4fcbb4796ffd9b53128c021e24bd6b0cd2a7efd385ab60f163
+MISC ChangeLog 5602 RMD160 ef885f6acb2a47c8231cb2cf50eacba86aa838ca SHA1 03906944c333eed2914a13bc07f600df65b456c8 SHA256 cde2454dccabafa548f255b461e5ceb5e6ee097b72e00a2b956ef5d76751c323
 MISC metadata.xml 470 RMD160 8db746301d113b2039240036dd0c4c58c2a231c8 SHA1 56e25a98a48d31c6dfdc877326621dcb07b9c290 SHA256 28ba86d2d3878f8c4e8f584cc8ef2d0e464f73492d0a09bea2d22ead10682cd8
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.14 (GNU/Linux)
+Version: GnuPG v2.0.15 (GNU/Linux)
 
-iEYEARECAAYFAkvySp4ACgkQgAnW8HDreRYMagCeJGAKxxEbxlfA7Ak4Eu4WoUNw
-920AoJ6fdLaoJgNd8vhw6/wzm8PqQMzL
-=7AQc
+iEYEARECAAYFAkwACasACgkQgAnW8HDreRbNfwCfSK1RPj7K7Hdm9Hxnvo9mCKy6
+FIYAnRgybJSi/JwUo04bIx/oAuxHtyoP
+=r5mv
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild b/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild
deleted file mode 100644
index 0f5794271b77..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild
+++ /dev/null
@@ -1,162 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild,v 1.3 2010/02/23 18:00:14 alexxy Exp $
-
-EAPI="1"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="tachyon"
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	x11-libs/libXft
-	virtual/opengl
-	x11-libs/fltk:1.1
-	>=dev-lang/tcl-8.4
-	>=dev-lang/tk-8.4
-	>=dev-lang/python-2.3
-	sci-biology/stride
-	sci-libs/netcdf"
-
-RDEPEND="${DEPEND}
-		tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
-	echo
-	elog "Please download ${SRC_URI} from"
-	elog "${VMD_DOWNLOAD}"
-	elog "after agreeing to the license and then move it to "
-	elog "${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# apply LINUX-arch patches to vmd configure
-	epatch "${FILESDIR}/${P}-config-gentoo.patch"
-	epatch "${FILESDIR}/${P}-python-2.5.patch"
-
-	TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.4"
-	if has_version =dev-lang/tcl-8.5*; then
-		epatch "${FILESDIR}/${P}-tcltk8.5.patch"
-		epatch "${FILESDIR}/${P}-fix-crash-on-tcl8.5.patch"
-		TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.5"
-	fi
-
-	# prepare the plugins
-
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO = -o :COPTO = -fPIC -o :" \
-		-e "s:LOPTO = -o :LOPTO = -fPIC -o :" \
-		-e "s:CCFLAGS = -O2 -Wall:CCFLAGS = ${CFLAGS}:" \
-		-e "s:CXXFLAGS = -O2 -Wall:CXXFLAGS = ${CXXFLAGS}:" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
-		-e "s:-ltcl8.4:-ltcl:" \
-		-i Make-arch || die "Failed to set up plugins Makefile"
-
-	sed -e "s:1.0:1.2:" -i vdna/pkgIndex.tcl \
-		|| die "Failed to fix vdna plugin"
-
-	# prepare vmd itself
-
-	cd "${S}"
-
-	sed -e "s:gentoo-bindir:${D}/usr/bin:" \
-		-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
-		-e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
-		-i configure || die "failed setting up fltk"
-
-	sed -e "s:gentoo-netcdf-include:/usr/include:" \
-		-e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
-		-i configure || die "failed to set up netcdf"
-
-	# get installed python version
-	python_version
-	local PY="python${PYVER}"
-
-	sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
-		-e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
-		-e "s:gentoo-python-link:${PY}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i "${S}"/bin/vmd || die "failed setting up vmd wrapper script"
-
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF"
-
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	make LINUX TCLINC="-I/usr/include" \
-		TCLLIB=-L/"${TCL_LIB_PATH}" \
-		|| die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	emake || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
-		die "failed to install plugins"
-
-	# install vmd
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# export STRIDE_BIN so VMD knows where to find stride
-	echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
-		die "Failed to create vmd env file"
-	doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${D}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
-		|| die "failed to set up vmd wrapper script"
-}
diff --git a/sci-chemistry/vmd/vmd-1.8.6.ebuild b/sci-chemistry/vmd/vmd-1.8.6.ebuild
deleted file mode 100644
index 90680f8822da..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.6.ebuild
+++ /dev/null
@@ -1,160 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6.ebuild,v 1.8 2009/05/17 20:15:13 je_fro Exp $
-
-EAPI="1"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	x11-libs/libXft
-	virtual/opengl
-	x11-libs/fltk:1.1
-	>=dev-lang/tcl-8.4
-	>=dev-lang/tk-8.4
-	>=dev-lang/python-2.3
-	sci-biology/stride
-	sci-libs/netcdf"
-
-RDEPEND="${DEPEND}"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
-	echo
-	einfo "Please download ${SRC_URI} from"
-	einfo "${VMD_DOWNLOAD}"
-	einfo "after agreeing to the license and then move it to "
-	einfo "${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# apply LINUX-arch patches to vmd configure
-	epatch "${FILESDIR}"/${P}-config-gentoo.patch
-	epatch "${FILESDIR}"/${P}-python-2.5.patch
-
-	TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.4"
-	if has_version =dev-lang/tcl-8.5*; then
-		epatch "${FILESDIR}"/${P}-tcltk8.5.patch
-		TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.5"
-	fi
-
-	# prepare the plugins
-
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
-	    -e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO = -o :COPTO = -fPIC -o :" \
-		-e "s:LOPTO = -o :LOPTO = -fPIC -o :" \
-		-e "s:CCFLAGS = -O2 -Wall:CCFLAGS = ${CFLAGS}:" \
-		-e "s:CXXFLAGS = -O2 -Wall:CXXFLAGS = ${CXXFLAGS}:" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
-		-e "s:-ltcl8.4:-ltcl:" \
-	    -i Make-arch || die "Failed to set up plugins Makefile"
-
-	sed -e "s:1.0:1.2:" -i vdna/pkgIndex.tcl \
-		|| die "Failed to fix vdna plugin"
-
-	# prepare vmd itself
-
-	cd "${S}"
-
-	sed -e "s:gentoo-bindir:${D}/usr/bin:" \
-		-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
-		-e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
-		-i configure || die "failed setting up fltk"
-
-	sed -e "s:gentoo-netcdf-include:/usr/include:" \
-		-e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
-		-i configure || die "failed to set up netcdf"
-
-	# get installed python version
-	python_version
-	local PY="python${PYVER}"
-
-	sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
-		-e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
-		-e "s:gentoo-python-link:${PY}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i "${S}"/bin/vmd || die "failed setting up vmd wrapper script"
-
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF"
-
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	make LINUX TCLINC="-I/usr/include" \
-		TCLLIB=-L/"${TCL_LIB_PATH}" \
-		|| die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	emake || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
-		die "failed to install plugins"
-
-	# install vmd
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# export STRIDE_BIN so VMD knows where to find stride
-	echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
-		die "Failed to create vmd env file"
-	doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${D}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
-		|| die "failed to set up vmd wrapper script"
-}
diff --git a/sci-chemistry/vmd/vmd-1.8.7.ebuild b/sci-chemistry/vmd/vmd-1.8.7.ebuild
deleted file mode 100644
index 44af20cbd78a..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.7.ebuild
+++ /dev/null
@@ -1,167 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.7.ebuild,v 1.6 2010/02/23 18:00:14 alexxy Exp $
-
-EAPI="2"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="tachyon"
-
-RESTRICT="fetch"
-
-# currently, tk-8.5* with USE=truetype breaks some
-# tk apps such as Sequence Viewer or Timeline.
-DEPEND="x11-libs/libXft
-	virtual/opengl
-	x11-libs/fltk:1.1
-	>=dev-lang/tcl-8.4
-	|| (
-		>=dev-lang/tk-8.5[-truetype]
-		=dev-lang/tk-8.4*
-	)
-	=dev-lang/python-2*
-	dev-lang/perl
-	dev-python/numpy
-	sci-biology/stride
-	sci-libs/netcdf"
-
-RDEPEND="${DEPEND}
-	x11-terms/xterm
-	tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
-	echo
-	elog "Please download ${SRC_URI} from"
-	elog "${VMD_DOWNLOAD}"
-	elog "after agreeing to the license and then move it to "
-	elog "${DISTDIR}"
-	echo
-}
-
-src_prepare() {
-	# apply LINUX-arch patches to vmd configure
-	epatch "${FILESDIR}/${P}-config.patch"
-	epatch "${FILESDIR}/${P}-use-bash-startup.patch"
-
-	# prepare the plugins
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
-		-e "s:LOPTO = .*\":LOPTO = -fPIC -o\":" \
-		-e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
-		-e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
-		-e "s:-ltcl8.5:-ltcl:" \
-		-i Make-arch || die "Failed to set up plugins Makefile"
-
-	# prepare vmd itself
-	cd "${S}"
-
-	sed -e "s:gentoo-bindir:${D}/usr/bin:" \
-		-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-	sed -e "s:gentoo-opengl-include:/usr/include/GL:" \
-		-e "s:gentoo-opengl-libs:/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust OpenGL paths"
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
-		-e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
-		-i configure || die "failed setting up fltk"
-
-	sed -e "s:gentoo-netcdf-include:/usr/include:" \
-		-e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
-		-i configure || die "failed to set up netcdf"
-
-	# get installed python version
-	python_version
-	local PY="python${PYVER}"
-
-	local NUMPY_INCLUDE="site-packages/numpy/core/include"
-	sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
-		-e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
-		-e "s:gentoo-python-link:${PY}:" \
-		-e "s:gentoo-numpy-include:/usr/$(get_libdir)/${PY}/${NUMPY_INCLUDE}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
-}
-
-src_configure() {
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY"
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	make LINUX TCLINC="-I/usr/include" \
-		TCLLIB="-L/usr/$(get_libdir)" \
-		|| die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	emake || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
-		die "failed to install plugins"
-
-	# install vmd
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# export STRIDE_BIN so VMD knows where to find stride
-	echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
-		die "Failed to create vmd env file"
-	doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${D}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
-		|| die "failed to set up vmd wrapper script"
-
-	# install icon and generate desktop entry
-	insinto /usr/share/pixmaps
-	doins "${FILESDIR}"/vmd.png || die "Failed to install vmd icon"
-	insinto /usr/share/applications
-	doins "${FILESDIR}"/vmd.desktop || die "Failed to install desktop entry"
-}