New Addition, imported from sci overlay

Package-Manager: portage-2.1.9.24/cvs/Linux x86_64

7 files changed, 195 insertions, 0 deletions

diff --git a/sci-libs/libcmatrix/ChangeLog b/sci-libs/libcmatrix/ChangeLog
new file mode 100644
index 000000000000..e5534ae43d4a
--- /dev/null
+++ b/sci-libs/libcmatrix/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-libs/libcmatrix
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libcmatrix/ChangeLog,v 1.1 2010/11/03 09:30:24 jlec Exp $
+
+*libcmatrix-3.2.1 (03 Nov 2010)
+
+  03 Nov 2010; Justin Lecher <jlec@gentoo.org> +files/3.2.1-gcc4.4.patch,
+  +libcmatrix-3.2.1.ebuild, +files/3.2.1-minuit2.patch,
+  +files/3.2.1-shared.patch, +metadata.xml:
+  New Addition, imported from sci overlay
+
diff --git a/sci-libs/libcmatrix/Manifest b/sci-libs/libcmatrix/Manifest
new file mode 100644
index 000000000000..c1e36cb72d55
--- /dev/null
+++ b/sci-libs/libcmatrix/Manifest
@@ -0,0 +1,17 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 3.2.1-gcc4.4.patch 286 RMD160 8b275ad714b6bedbff03e411187342406f5cf1a7 SHA1 52873e8ef3197148d6c4ddfe0155a3cbfe4fd3db SHA256 e6eff8c9be0f9ac9026d1c00841e81a3f2e00127cbb70bd6e117de262e262fb3
+AUX 3.2.1-minuit2.patch 588 RMD160 7bfc835d79915342e6fdb209cfff29e0e8692bbc SHA1 374e8b92a1263ab488089303c6cbb46a28e7929f SHA256 099d47445e6efb340831b4a1f6210b02eb2a2ccf6f680f982761defcadfd1962
+AUX 3.2.1-shared.patch 2626 RMD160 3227ea97a22750309d7e1d27aae276adc62c68d8 SHA1 5affbd06480e9fa95d44aae99c1665b9ff631cc6 SHA256 23983f6986b13cb31df7157e22932538cd73d4d2e2b806d42fa4a0df644b6df6
+DIST libcmatrix-3.2.1.tar.gz 1151322 RMD160 d5f41d7fde34039482e3c971ecff84177ba5c064 SHA1 4612d4d0be34566bca83fe8b8a17033cd0457375 SHA256 6b4cb3ae4e1ed0a33190b09cd15a72c0938e3b598dbda39ca1557b482731b5c4
+EBUILD libcmatrix-3.2.1.ebuild 1080 RMD160 2c29950f349667ed547b172d50f9ff7913992195 SHA1 7d83182ae36a9189dfced2d5d388cea420ea27fd SHA256 f888534ea51d50f7d46c251047c29bba2b715897ed797bd6768176e76b85bdb7
+MISC ChangeLog 459 RMD160 42a5b39d3b888a731e9813057cac2abf19117a8f SHA1 93c049a93288025725a0f809ccd400412f93114f SHA256 50f9ac7da8d14ee492331167d4ee276748a68d5fa200780279fac852076e4fe4
+MISC metadata.xml 290 RMD160 812d033907b7a0d755e1e38fb368b8eb5384cf02 SHA1 e7fc920fb3801d39c18f549ebac50add4d7f60da SHA256 307cd1defa0ca02a2c515b20c8ce50c80c4deccf845b8c55badd51896cbd8771
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.16 (GNU/Linux)
+
+iEYEARECAAYFAkzRK7YACgkQgAnW8HDreRYNKACgi58yk4Y5KIbo+kkiRyLcYJyY
++CkAoJctdCcoYbqjRT0ka1ib+8tV8ITa
+=P/Jm
+-----END PGP SIGNATURE-----
diff --git a/sci-libs/libcmatrix/files/3.2.1-gcc4.4.patch b/sci-libs/libcmatrix/files/3.2.1-gcc4.4.patch
new file mode 100644
index 000000000000..24c1a89b48d0
--- /dev/null
+++ b/sci-libs/libcmatrix/files/3.2.1-gcc4.4.patch
@@ -0,0 +1,12 @@
+diff --git a/include/DynamicList.h b/include/DynamicList.h
+index f8c1346..05a7b10 100755
+--- a/include/DynamicList.h
++++ b/include/DynamicList.h
+@@ -4,6 +4,7 @@
+ #include "BaseList.h"
+ #include "lcm_basethreads.h"
+ #include "Warnings.h"
++#include <cstdio>
+ 
+ namespace libcmatrix {
+   
diff --git a/sci-libs/libcmatrix/files/3.2.1-minuit2.patch b/sci-libs/libcmatrix/files/3.2.1-minuit2.patch
new file mode 100644
index 000000000000..24dc5628b8f0
--- /dev/null
+++ b/sci-libs/libcmatrix/files/3.2.1-minuit2.patch
@@ -0,0 +1,14 @@
+--- configure-libraries.ac	2008-03-04 00:48:46.000000000 +0100
++++ configure-libraries.ac.new	2009-03-19 18:22:21.000000000 +0100
+@@ -14,8 +14,8 @@
+ 	fi
+ 	if test x$FOUNDMINUIT = xyes; then
+ 		AC_CHECK_LIB(lcg_Minuit,main,,	
+-			AC_CHECK_LIB(Minuit,main,,FOUNDMINUIT=no
+-				AC_MSG_WARN([Minuit library (liblcg_Minuit or libMinuit) not found
++			AC_CHECK_LIB(Minuit2,main,,FOUNDMINUIT=no
++				AC_MSG_WARN([Minuit library (liblcg_Minuit or libMinuit2) not found
+ Is LDFLAGS is defined to include relevant directory?])))
+ 		if test x$FOUNDMINUIT = xyes; then
+ 			AC_DEFINE(HAVE_LIBMINUIT)
+
diff --git a/sci-libs/libcmatrix/files/3.2.1-shared.patch b/sci-libs/libcmatrix/files/3.2.1-shared.patch
new file mode 100644
index 000000000000..9ab453d98b17
--- /dev/null
+++ b/sci-libs/libcmatrix/files/3.2.1-shared.patch
@@ -0,0 +1,80 @@
+diff --git a/Makefile.in b/Makefile.in
+index 1361371..1448e76 100755
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -13,8 +13,8 @@ AR=@AR@
+ 
+ # You shouldn't need to alter anything below here
+ 
+-COMPILE=$(CXX) $(CPPFLAGS) $(CXXFLAGS) -c
+-ALLOPTFLAGS=$(OPTFLAGS) -DNDEBUG
++COMPILE=$(CXX) $(CPPFLAGS) $(CXXFLAGS) -fPIC -c
++#ALLOPTFLAGS=$(OPTFLAGS) -DNDEBUG
+ 
+ LOCALOBJS= local/CrystalSystem.o local/CrystalGeneric.o local/MoleculeStructure.o
+ COREOBJS= coredefs/complex.o coredefs/common.o coredefs/diagonal.o coredefs/diagonalise.o coredefs/power.o coredefs/invert.o coredefs/transforms.o coredefs/blocking.o coredefs/mixed.o coredefs/realtransforms.o coredefs/Chebyshev.o
+@@ -36,7 +36,7 @@ ALLTHROBJS=$(UNSAFEOBJS:.o=_r.o) $(ALLSAFEOBJS)
+ 
+ ROOT=..
+ 
+-first: lib/libcmatrix.a
++first: lib/libcmatrix.so.3.2.1
+ 
+ #%.o: %.f
+ #	@F77@ @FFLAGS@ -c -o $@ $<
+@@ -68,25 +68,25 @@ tempclean:
+ #	-cd optim; @CLEAN@
+ #	-cd local; @CLEAN@
+ 
+-lib/libcmatrix.a: $(ALLNORMOBJS)
+-	$(AR) $@ $(ALLNORMOBJS)
+-	chmod a+rx $@
+-	$(RANLIB) $@
+-
+-lib/libcmatrix_p.a: $(ALLPROFOBJS)
+-	$(AR)  $@ $(ALLPROFOBJS)
+-	chmod a+rx $@
+-	$(RANLIB) $@
+-
+-lib/libcmatrix-g.a: $(ALLGOBJS)
+-	$(AR)  $@  $(ALLGOBJS)
+-	chmod a+rx $@
+-	$(RANLIB) $@
+-
+-lib/libcmatrix_r.a: $(ALLTHROBJS)
+-	$(AR) @MTFLAGS@ $@ $(ALLTHROBJS)
+-	chmod a+rx $@
+-	$(RANLIB) $@
++lib/libcmatrix.so.3.2.1: $(ALLNORMOBJS)
++	$(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLNORMOBJS)
++	ln -sf libcmatrix.so.3.2.1 lib/libcmatrix.so.3
++	ln -sf libcmatrix.so.3.2.1 lib/libcmatrix.so
++
++lib/libcmatrix_p.so.3.2.1: $(ALLPROFOBJS)
++	$(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLPROFOBJS)
++	ln -sf libcmatrix_p.so.3.2.1 lib/libcmatrix_p.so.3
++	ln -sf libcmatrix_p.so.3.2.1 lib/libcmatrix_p.so
++
++lib/libcmatrix-g.so.3.2.1: $(ALLGOBJS)
++	$(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLGOBJS)
++	ln -sf libcmatrix-g.so.3.2.1 lib/libcmatrix-g.so.3
++	ln -sf libcmatrix-g.so.3.2.1 lib/libcmatrix-g.so
++
++lib/libcmatrix.so_r.3.2.1: $(ALLTHROBJS)
++	$(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLTHROBJS)
++	ln -sf libcmatrix_r.so.3.2.1 lib/libcmatrix_r.so.3
++	ln -sf libcmatrix_r.so.3.2.1 lib/libcmatrix_r.so
+ 
+ @CONFIGLEAF@.tar.gz:
+ 	cd $(ROOT) ; tar --exclude lib/* --exclude *.o --exclude=*~ --exclude=Makefile --exclude=include/config.h --exclude=config.status -cvf @CONFIGLEAF@.tar @CONFIGLEAF@
+diff --git a/configure.ac b/configure.ac
+index c0ae0e1..50dcd5a 100755
+--- a/configure.ac
++++ b/configure.ac
+@@ -1,5 +1,6 @@
+ AC_INIT(configure.ac)
+ AC_CONFIG_HEADER(include/config.h)
++LT_INIT
+ 
+ DEFAR="ar ru"
+ MAKEEXTRA=
diff --git a/sci-libs/libcmatrix/libcmatrix-3.2.1.ebuild b/sci-libs/libcmatrix/libcmatrix-3.2.1.ebuild
new file mode 100644
index 000000000000..01522394aec2
--- /dev/null
+++ b/sci-libs/libcmatrix/libcmatrix-3.2.1.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libcmatrix/libcmatrix-3.2.1.ebuild,v 1.1 2010/11/03 09:30:24 jlec Exp $
+
+EAPI="3"
+
+inherit autotools eutils
+
+MY_P="${PN}${PV}_lite"
+
+DESCRIPTION="lite version of pNMRsim"
+HOMEPAGE="http://www.dur.ac.uk/paul.hodgkinson/pNMRsim/"
+#SRC_URI="${HOMEPAGE}/${MY_P}.tar.gz"
+SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${P}.tar.gz"
+
+LICENSE="as-is"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="atlas threads"
+
+RDEPEND="
+	sci-libs/minuit
+	atlas? ( sci-libs/blas-atlas )"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/${PN}R3
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PV}-shared.patch \
+		"${FILESDIR}"/${PV}-minuit2.patch \
+		"${FILESDIR}"/${PV}-gcc4.4.patch
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		--with-minuit \
+		$(use_with atlas) \
+		$(use_with threads)
+}
+
+src_install() {
+	dolib.so lib/*.so* || die "install failed"
+
+	insinto /usr/include/${PN}R3
+	doins include/* || die "no includes"
+
+	dodoc CHANGES docs/* || die "no docs"
+}
diff --git a/sci-libs/libcmatrix/metadata.xml b/sci-libs/libcmatrix/metadata.xml
new file mode 100644
index 000000000000..ae22c398e6ee
--- /dev/null
+++ b/sci-libs/libcmatrix/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+<use>
+  <flag name='atlas'>Use of atlas blas implementation</flag>
+</use>
+</pkgmetadata>