Initial import to the main tree

Package-Manager: portage-2.1.9.30/cvs/Linux x86_64

15 files changed, 448 insertions, 0 deletions

diff --git a/sci-libs/scikits/ChangeLog b/sci-libs/scikits/ChangeLog
new file mode 100644
index 000000000000..cefb129e97ba
--- /dev/null
+++ b/sci-libs/scikits/ChangeLog
@@ -0,0 +1,12 @@
+# ChangeLog for sci-libs/scikits
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits/ChangeLog,v 1.1 2011/01/08 19:26:17 bicatali Exp $
+
+  08 Jan 2011; Sébastien Fabbro <bicatali@gentoo.org> +scikits-0.1.ebuild:
+  Initial import to the main tree
+
+*scikits-0.1 (04 Dec 2010)
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org> +scikits-0.1.ebuild:
+  Initial import
+
diff --git a/sci-libs/scikits/metadata.xml b/sci-libs/scikits/metadata.xml
new file mode 100644
index 000000000000..e5bc257a5fc9
--- /dev/null
+++ b/sci-libs/scikits/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  Meta package for the scikits. Include a standard example as well.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/scikits/scikits-0.1.ebuild b/sci-libs/scikits/scikits-0.1.ebuild
new file mode 100644
index 000000000000..059c2c8244f5
--- /dev/null
+++ b/sci-libs/scikits/scikits-0.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits/scikits-0.1.ebuild,v 1.1 2011/01/08 19:26:17 bicatali Exp $
+
+
+EAPI="3"
+SUPPORT_PYTHON_ABIS="1"
+inherit python
+
+DESCRIPTION="Common files for python scikits"
+HOMEPAGE="http://projects.scipy.org/scipy/scikits"
+SRC_URI="http://pypi.python.org/packages/source/${PN:0:1}/${PN}.example/${PN}.example-${PV}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="examples"
+
+RDEPEND=""
+DEPEND=""
+S="${WORKDIR}"
+
+src_install() {
+	install_scikits() {
+		insinto $(python_get_sitedir)/scikits
+		doins scikits.example*/scikits/__init__.py || die
+	}
+	python_execute_function -q install_scikits
+	if use examples; then
+		insinto /usr/share/doc/${PF}/examples
+		doins -r scikits.examples*/* || die
+	fi
+}
diff --git a/sci-libs/scikits_image/ChangeLog b/sci-libs/scikits_image/ChangeLog
new file mode 100644
index 000000000000..ea5ee5796440
--- /dev/null
+++ b/sci-libs/scikits_image/ChangeLog
@@ -0,0 +1,24 @@
+# ChangeLog for sci-libs/scikits_image
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_image/ChangeLog,v 1.1 2011/01/08 19:22:18 bicatali Exp $
+
+  08 Jan 2011; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_image-0.2.2.ebuild, +metadata.xml:
+  Initial import to the main tree
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  scikits_image-0.2.2.ebuild:
+  Now depend on common scikits
+
+  29 Jun 2010; Justin Lecher <jlec@gentoo.org> scikits_image-0.2.2.ebuild:
+  Python ABI fixes
+
+  29 Jun 2010; Justin Lecher <jlec@gentoo.org> scikits_image-0.2.2.ebuild:
+  removed old
+
+*scikits_image-0.2.2 (26 Mar 2010)
+
+  26 Mar 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_image-0.2.2.ebuild, +metadata.xml:
+  Initial import
+
diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml
new file mode 100644
index 000000000000..3efece613f9d
--- /dev/null
+++ b/sci-libs/scikits_image/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  This SciKit (toolkit for SciPy) includes useful image processing
+  algorithms for use with Python and NumPy. While SciPy’s ndimage
+  provides low-level manipulation, scikits.image centres around
+  algorithms and applications.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/scikits_image/scikits_image-0.2.2.ebuild b/sci-libs/scikits_image/scikits_image-0.2.2.ebuild
new file mode 100644
index 000000000000..b70c72457405
--- /dev/null
+++ b/sci-libs/scikits_image/scikits_image-0.2.2.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_image/scikits_image-0.2.2.ebuild,v 1.1 2011/01/08 19:22:18 bicatali Exp $
+
+EAPI="2"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit distutils
+
+MY_P="${P/scikits_/scikits.}"
+
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="http://stefanv.github.com/scikits.image"
+SRC_URI="http://pypi.python.org/packages/source/s/scikits.image/${MY_P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+RDEPEND="dev-python/numpy
+	sci-libs/scikits"
+DEPEND="${RDEPEND}
+	dev-python/setuptools
+	doc? ( dev-python/sphinx )"
+
+S="${WORKDIR}/${MY_P}"
+
+src_compile() {
+	distutils_src_compile
+	if use doc; then
+		"$(PYTHON -f)" setup.py build_sphinx || die "Generation of documentation failed"
+	fi
+}
+
+src_test() {
+	testing() {
+		PYTHONPATH="$(dir -d build-${PYTHON_ABI}/lib*)" "$(PYTHON)" setup.py build -b "build-${PYTHON_ABI}" test
+	}
+	python_execute_function testing
+}
+
+src_install() {
+	distutils_src_install
+	remove_scikits() {
+		rm -f "${ED}"$(python_get_sitedir)/scikits/__init__.py || die
+	}
+	python_execute_function -q remove_scikits
+	dodoc *.txt || die
+	insinto /usr/share/doc/${PF}
+	if use doc; then
+		doins -r build/sphinx/html || die
+	fi
+}
diff --git a/sci-libs/scikits_learn/ChangeLog b/sci-libs/scikits_learn/ChangeLog
new file mode 100644
index 000000000000..104280f21ad4
--- /dev/null
+++ b/sci-libs/scikits_learn/ChangeLog
@@ -0,0 +1,35 @@
+# ChangeLog for sci-libs/scikits_learn
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_learn/ChangeLog,v 1.1 2011/01/08 19:22:56 bicatali Exp $
+
+*scikits_learn-0.6 (08 Jan 2011)
+
+  08 Jan 2011; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_learn-0.6.ebuild, +metadata.xml:
+  Initial import to the main tree
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  scikits_learn-0.5.ebuild:
+  Now depend on common scikits
+
+*scikits_learn-0.5 (04 Dec 2010)
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_learn-0.5.ebuild:
+  Version bump. Now depends on sci-libs/scikits.
+
+*scikits_learn-0.4 (05 Aug 2010)
+
+  05 Aug 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  -scikits_learn-0.2.ebuild, +scikits_learn-0.4.ebuild:
+  Version bump. Now depend on system libsvm
+
+  29 Jun 2010; Justin Lecher <jlec@gentoo.org> scikits_learn-0.2.ebuild:
+  Python ABI fixes
+
+*scikits_learn-0.2 (26 Mar 2010)
+
+  26 Mar 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_learn-0.2.ebuild, +metadata.xml:
+  Initial import
+
diff --git a/sci-libs/scikits_learn/metadata.xml b/sci-libs/scikits_learn/metadata.xml
new file mode 100644
index 000000000000..087bbc4a99a7
--- /dev/null
+++ b/sci-libs/scikits_learn/metadata.xml
@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  scikits.learn is a python library for machine learning. It aims to
+  implement classic machine learning algorithms while remaining simple
+  and efficient.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/scikits_learn/scikits_learn-0.6.ebuild b/sci-libs/scikits_learn/scikits_learn-0.6.ebuild
new file mode 100644
index 000000000000..ee0e366dd722
--- /dev/null
+++ b/sci-libs/scikits_learn/scikits_learn-0.6.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_learn/scikits_learn-0.6.ebuild,v 1.1 2011/01/08 19:22:56 bicatali Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit distutils
+
+MY_P="${P/scikits_/scikits.}"
+
+DESCRIPTION="A set of python modules for machine learning and data mining"
+HOMEPAGE="http://scikits-learn.sourceforge.net/"
+SRC_URI="mirror://sourceforge/scikit-learn/${MY_P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples test"
+
+CDEPEND="sci-libs/scipy
+	>=sci-libs/libsvm-2.91"
+RDEPEND="${CDEPEND}
+	sci-libs/scikits
+	dev-python/matplotlib"
+DEPEND="${CDEPEND}
+	dev-python/cython
+	dev-python/setuptools
+	doc? ( dev-python/sphinx dev-python/matplotlib )"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	# use stock libsvm
+	cat <<-EOF >> site.cfg
+		[libsvm]
+		libraries=svm
+		library_dirs=${EPREFIX}/usr/$(get_libdir)
+		include_dirs=${EPREFIX}/usr/include/libsvm-2.0/libsvm
+	EOF
+}
+
+src_compile() {
+	distutils_src_compile
+	if use doc; then
+		cd "${S}/doc"
+		export VARTEXFONTS="${T}"/fonts
+		MPLCONFIGDIR="${S}/build-$(PYTHON -f --ABI)" \
+			PYTHONPATH=$(ls -d "${S}"/build-$(PYTHON -f --ABI)/lib*) \
+			emake html latex || die
+	fi
+}
+
+src_install() {
+	find "${S}" -name \*LICENSE.txt -delete
+	distutils_src_install
+	remove_scikits() {
+		rm -f "${ED}"$(python_get_sitedir)/scikits/__init__.py || die
+	}
+	python_execute_function -q remove_scikits
+	insinto /usr/share/doc/${PF}
+	if use doc; then
+		doins "${DISTDIR}"/scikits.learn.pdf || die
+		doins -r build/sphinx/html || die
+	fi
+	if use examples; then
+		doins -r examples || die
+	fi
+}
diff --git a/sci-libs/scikits_optimization/ChangeLog b/sci-libs/scikits_optimization/ChangeLog
new file mode 100644
index 000000000000..b59b02377281
--- /dev/null
+++ b/sci-libs/scikits_optimization/ChangeLog
@@ -0,0 +1,22 @@
+# ChangeLog for sci-libs/scikits_optimization
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_optimization/ChangeLog,v 1.1 2011/01/08 19:23:25 bicatali Exp $
+
+  08 Jan 2011; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_optimization-0.1.ebuild, +metadata.xml:
+  Initial import to the main tree
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  scikits_optimization-0.1.ebuild:
+  Now depend on common scikits
+
+  29 Jun 2010; Justin Lecher <jlec@gentoo.org>
+  scikits_optimization-0.1.ebuild:
+  Python ABI fixes
+
+*scikits_optimization-0.1 (26 Mar 2010)
+
+  26 Mar 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_optimization-0.1.ebuild, +metadata.xml:
+  Initial import
+
diff --git a/sci-libs/scikits_optimization/metadata.xml b/sci-libs/scikits_optimization/metadata.xml
new file mode 100644
index 000000000000..4603bd8a9e79
--- /dev/null
+++ b/sci-libs/scikits_optimization/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  A Python module for numerical optimization.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/scikits_optimization/scikits_optimization-0.1.ebuild b/sci-libs/scikits_optimization/scikits_optimization-0.1.ebuild
new file mode 100644
index 000000000000..1423b13b05f0
--- /dev/null
+++ b/sci-libs/scikits_optimization/scikits_optimization-0.1.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_optimization/scikits_optimization-0.1.ebuild,v 1.1 2011/01/08 19:23:25 bicatali Exp $
+
+EAPI="2"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit distutils
+
+MY_P="${P/scikits_/scikits.}"
+
+DESCRIPTION="Python module for numerical optimization"
+HOMEPAGE="http://projects.scipy.org/scipy/scikits"
+SRC_URI="http://pypi.python.org/packages/source/s/scikits.optimization/${MY_P}.zip"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-python/numpy
+	sci-libs/scikits"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-python/setuptools"
+
+S="${WORKDIR}/${MY_P}"
+
+src_test() {
+	testing() {
+		PYTHONPATH="$(dir -d build-${PYTHON_ABI}/lib*)" "$(PYTHON)" setup.py build -b "build-${PYTHON_ABI}" test
+	}
+	python_execute_function testing
+}
+
+src_install() {
+	distutils_src_install
+	remove_scikits() {
+		rm -f "${ED}"$(python_get_sitedir)/scikits/__init__.py || die
+	}
+	python_execute_function -q remove_scikits
+}
diff --git a/sci-libs/scikits_statsmodels/ChangeLog b/sci-libs/scikits_statsmodels/ChangeLog
new file mode 100644
index 000000000000..1de5f2430d73
--- /dev/null
+++ b/sci-libs/scikits_statsmodels/ChangeLog
@@ -0,0 +1,22 @@
+# ChangeLog for sci-libs/scikits_statsmodels
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_statsmodels/ChangeLog,v 1.1 2011/01/08 19:23:57 bicatali Exp $
+
+  08 Jan 2011; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_statsmodels-0.2.0.ebuild, +metadata.xml:
+  Initial import to the main tree
+
+  04 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  scikits_statsmodels-0.2.0.ebuild:
+  Now depend on common scikits
+
+  29 Jun 2010; Justin Lecher <jlec@gentoo.org>
+  scikits_statsmodels-0.2.0.ebuild:
+  Python ABI fixes
+
+*scikits_statsmodels-0.2.0 (26 Mar 2010)
+
+  26 Mar 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  +scikits_statsmodels-0.2.0.ebuild, +metadata.xml:
+  Initial import of scikits.statsmodels
+
diff --git a/sci-libs/scikits_statsmodels/metadata.xml b/sci-libs/scikits_statsmodels/metadata.xml
new file mode 100644
index 000000000000..161761b3f0f6
--- /dev/null
+++ b/sci-libs/scikits_statsmodels/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  Statsmodels is a python package that provides a complement to scipy
+  for statistical computations including descriptive statistics and
+  estimation of statistical models.
+
+  scikits.statsmodels provides classes and functions for the estimation
+  of several categories of statistical models. These currently include
+  linear regression models, OLS, GLS, WLS and GLS with AR(p) errors,
+  generalized linear models for six distribution families, M-estimators for robust
+  linear models, and regression with discrete dependent variables,
+  Logit, Probit, MNLogit, Poisson, based on maximum likelihood estimators.
+  An extensive list of result statistics are avalable for each  estimation
+  problem.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/scikits_statsmodels/scikits_statsmodels-0.2.0.ebuild b/sci-libs/scikits_statsmodels/scikits_statsmodels-0.2.0.ebuild
new file mode 100644
index 000000000000..a49f3eedec3b
--- /dev/null
+++ b/sci-libs/scikits_statsmodels/scikits_statsmodels-0.2.0.ebuild
@@ -0,0 +1,70 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scikits_statsmodels/scikits_statsmodels-0.2.0.ebuild,v 1.1 2011/01/08 19:23:57 bicatali Exp $
+
+EAPI="2"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit distutils
+
+MY_P="${P/scikits_/scikits.}"
+
+DESCRIPTION="Statistical computations and models for use with SciPy"
+HOMEPAGE="http://scikits.appspot.com/statsmodels"
+SRC_URI="http://pypi.python.org/packages/source/s/scikits.statsmodels/${MY_P}.zip"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples test"
+
+RDEPEND="sci-libs/scipy
+	sci-libs/scikits"
+DEPEND="dev-python/numpy
+	dev-python/setuptools
+	doc? ( dev-python/sphinx )"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	# remove badly placed docs and examples
+	sed -i \
+		-e '/statsmodels\/docs/d' \
+		-e '/statsmodels\/examples/d' \
+		setup.py || die
+	mv scikits/statsmodels/{docs,examples} .
+	distutils_src_prepare
+}
+
+src_compile() {
+	distutils_src_compile
+	if use doc; then
+		"$(PYTHON -f)" setup.py build_sphinx || die "Generation of documentation failed"
+	fi
+}
+
+src_test() {
+	testing() {
+		PYTHONPATH="$(dir -d build-${PYTHON_ABI}/lib*)" "$(PYTHON)" setup.py build -b "build-${PYTHON_ABI}" test
+	}
+	python_execute_function testing
+}
+
+src_install() {
+	find "${S}" -name \*LICENSE.txt -delete
+	distutils_src_install
+	remove_scikits() {
+		rm -f "${ED}"$(python_get_sitedir)/scikits/__init__.py || die
+	}
+	python_execute_function -q remove_scikits
+	insinto /usr/share/doc/${PF}
+	if use doc; then
+		doins -r build/sphinx/html || die
+	fi
+	if use examples; then
+		doins -r examples || die
+	fi
+}