Version bump, switch to EAPI5 and new tar ball

Package-Manager: portage-2.2.01.22013-prefix/cvs/Linux x86_64
Manifest-Sign-Key: 0x13CB1360

6 files changed, 56 insertions, 619 deletions

diff --git a/sci-libs/umfpack/ChangeLog b/sci-libs/umfpack/ChangeLog
index 8f32cde9c81a..f76a8f1a44f8 100644
--- a/sci-libs/umfpack/ChangeLog
+++ b/sci-libs/umfpack/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/umfpack
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/ChangeLog,v 1.43 2013/02/21 21:20:21 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/ChangeLog,v 1.44 2013/06/25 00:22:42 bicatali Exp $
+
+*umfpack-5.6.2 (25 Jun 2013)
+
+  25 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org> +umfpack-5.6.2.ebuild,
+  -files/5.5.1-autotools.patch, -umfpack-5.5.2.ebuild, metadata.xml:
+  Version bump, switch to EAPI5 and new tar ball
 
   21 Feb 2013; Justin Lecher <jlec@gentoo.org> umfpack-5.2.0.ebuild,
   umfpack-5.5.2.ebuild, umfpack-5.6.1-r1.ebuild, metadata.xml:
diff --git a/sci-libs/umfpack/Manifest b/sci-libs/umfpack/Manifest
index 26773d91030b..e15b39d7ad9d 100644
--- a/sci-libs/umfpack/Manifest
+++ b/sci-libs/umfpack/Manifest
@@ -1,20 +1,19 @@
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-Hash: SHA512
+Hash: SHA256
 
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 DIST UMFPACK-5.2.0.tar.gz 1122066 SHA256 cdf1061c551625f7d572f6f887bad978b4e0e90c6e448a08013ba72c95691c1c SHA512 cd9186ae4feb5c935883ec149c7cdccce980d383bcec33a40d96bd3bc7e0a10ea9d80e678eb689f5eb495acdd320bbee97593a06d1211f05a0ec4a188045939d WHIRLPOOL 9a790a8f5170f0b42bbc75e75c8a2ff851c697276be4865f8edb6e33842df7d78bece6f115eed599c3b64fd489d68a51d4899c98ded683d4ed8edbb3151dfd70
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 EBUILD umfpack-5.6.1-r1.ebuild 965 SHA256 4eae2503590624a9c751a4d71c4e3e6260692b5df8ec335c9db36974b12a6edd SHA512 fe3df3b7d3e574e7d004bb3088269cd94c63c191eb4a82e886a9fb04c08af79aa34d919ebfe993f37640f03fab5f92b66dc69e3ae9c97ca771612f774395a422 WHIRLPOOL 472c61a566b9e45e58fd01001e35935c2682d8f600eac3e6809d94894b95f39925c58f7aad8898bcdb9e9b125f31543ee8942cb3ef77ed2c24e6270ef03782df
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diff --git a/sci-libs/umfpack/files/5.5.1-autotools.patch b/sci-libs/umfpack/files/5.5.1-autotools.patch
deleted file mode 100644
index 645ea56f27fd..000000000000
--- a/sci-libs/umfpack/files/5.5.1-autotools.patch
+++ /dev/null
@@ -1,557 +0,0 @@
---- acx_blas.m4	1970-01-01 01:00:00.000000000 +0100
-+++ acx_blas.m4	2010-05-16 16:36:04.000000000 +0100
-@@ -0,0 +1,191 @@
-+##### http://autoconf-archive.cryp.to/acx_blas.html
-+#
-+# SYNOPSIS
-+#
-+#   ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
-+#
-+# DESCRIPTION
-+#
-+#   This macro looks for a library that implements the BLAS
-+#   linear-algebra interface (see http://www.netlib.org/blas/). On
-+#   success, it sets the BLAS_LIBS output variable to hold the
-+#   requisite library linkages.
-+#
-+#   To link with BLAS, you should link with:
-+#
-+#   	$BLAS_LIBS $LIBS $FLIBS
-+#
-+#   in that order. FLIBS is the output variable of the
-+#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
-+#   is sometimes necessary in order to link with F77 libraries. Users
-+#   will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
-+#   for the same reason.
-+#
-+#   Many libraries are searched for, from ATLAS to CXML to ESSL. The
-+#   user may also use --with-blas=<lib> in order to use some specific
-+#   BLAS library <lib>. In order to link successfully, however, be
-+#   aware that you will probably need to use the same Fortran compiler
-+#   (which can be set via the F77 env. var.) as was used to compile the
-+#   BLAS library.
-+#
-+#   ACTION-IF-FOUND is a list of shell commands to run if a BLAS
-+#   library is found, and ACTION-IF-NOT-FOUND is a list of commands to
-+#   run it if it is not found. If ACTION-IF-FOUND is not specified, the
-+#   default action will define HAVE_BLAS.
-+#
-+#   This macro requires autoconf 2.50 or later.
-+#
-+# LAST MODIFICATION
-+#
-+#   2007-07-29
-+#
-+# COPYLEFT
-+#
-+#   Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
-+#
-+#   This program is free software: you can redistribute it and/or
-+#   modify it under the terms of the GNU General Public License as
-+#   published by the Free Software Foundation, either version 3 of the
-+#   License, or (at your option) any later version.
-+#
-+#   This program is distributed in the hope that it will be useful, but
-+#   WITHOUT ANY WARRANTY; without even the implied warranty of
-+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-+#   General Public License for more details.
-+#
-+#   You should have received a copy of the GNU General Public License
-+#   along with this program. If not, see
-+#   <http://www.gnu.org/licenses/>.
-+#
-+#   As a special exception, the respective Autoconf Macro's copyright
-+#   owner gives unlimited permission to copy, distribute and modify the
-+#   configure scripts that are the output of Autoconf when processing
-+#   the Macro. You need not follow the terms of the GNU General Public
-+#   License when using or distributing such scripts, even though
-+#   portions of the text of the Macro appear in them. The GNU General
-+#   Public License (GPL) does govern all other use of the material that
-+#   constitutes the Autoconf Macro.
-+#
-+#   This special exception to the GPL applies to versions of the
-+#   Autoconf Macro released by the Autoconf Macro Archive. When you
-+#   make and distribute a modified version of the Autoconf Macro, you
-+#   may extend this special exception to the GPL to apply to your
-+#   modified version as well.
-+
-+AC_DEFUN([ACX_BLAS], [
-+AC_PREREQ(2.50)
-+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
-+acx_blas_ok=no
-+
-+AC_ARG_WITH(blas,
-+	[AC_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
-+case $with_blas in
-+	yes | "") ;;
-+	no) acx_blas_ok=disable ;;
-+	-* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
-+	*) BLAS_LIBS="-l$with_blas" ;;
-+esac
-+
-+# Get fortran linker names of BLAS functions to check for.
-+AC_F77_FUNC(sgemm)
-+AC_F77_FUNC(dgemm)
-+
-+acx_blas_save_LIBS="$LIBS"
-+LIBS="$LIBS $FLIBS"
-+
-+# First, check BLAS_LIBS environment variable
-+if test $acx_blas_ok = no; then
-+if test "x$BLAS_LIBS" != x; then
-+	save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
-+	AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
-+	AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""])
-+	AC_MSG_RESULT($acx_blas_ok)
-+	LIBS="$save_LIBS"
-+fi
-+fi
-+
-+# BLAS linked to by default?  (happens on some supercomputers)
-+if test $acx_blas_ok = no; then
-+	save_LIBS="$LIBS"; LIBS="$LIBS"
-+	AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes])
-+	LIBS="$save_LIBS"
-+fi
-+
-+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(atlas, ATL_xerbla,
-+		[AC_CHECK_LIB(f77blas, $sgemm,
-+		[AC_CHECK_LIB(cblas, cblas_dgemm,
-+			[acx_blas_ok=yes
-+			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
-+			[], [-lf77blas -latlas])],
-+			[], [-latlas])])
-+fi
-+
-+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm,
-+		[AC_CHECK_LIB(dgemm, $dgemm,
-+		[AC_CHECK_LIB(sgemm, $sgemm,
-+			[acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
-+			[], [-lblas])],
-+			[], [-lblas])])
-+fi
-+
-+# BLAS in Alpha CXML library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"])
-+fi
-+
-+# BLAS in Alpha DXML library? (now called CXML, see above)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"])
-+fi
-+
-+# BLAS in Sun Performance library?
-+if test $acx_blas_ok = no; then
-+	if test "x$GCC" != xyes; then # only works with Sun CC
-+		AC_CHECK_LIB(sunmath, acosp,
-+			[AC_CHECK_LIB(sunperf, $sgemm,
-+        			[BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
-+                                 acx_blas_ok=yes],[],[-lsunmath])])
-+	fi
-+fi
-+
-+# BLAS in SCSL library?  (SGI/Cray Scientific Library)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"])
-+fi
-+
-+# BLAS in SGIMATH library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(complib.sgimath, $sgemm,
-+		     [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
-+fi
-+
-+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm,
-+		[AC_CHECK_LIB(essl, $sgemm,
-+			[acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
-+			[], [-lblas $FLIBS])])
-+fi
-+
-+# Generic BLAS library?
-+if test $acx_blas_ok = no; then
-+	AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"])
-+fi
-+
-+AC_SUBST(BLAS_LIBS)
-+
-+LIBS="$acx_blas_save_LIBS"
-+
-+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
-+if test x"$acx_blas_ok" = xyes; then
-+        ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
-+        :
-+else
-+        acx_blas_ok=no
-+        $2
-+fi
-+])dnl ACX_BLAS
---- configure.ac	1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac	2010-05-16 16:37:29.000000000 +0100
-@@ -0,0 +1,47 @@
-+#                                               -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(umfpack, 5.5.1, davis@cise.ufl.edu)
-+AC_CONFIG_SRCDIR([Source/umf_solve.c])
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_F77
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+sinclude(acx_blas.m4)
-+ACX_BLAS
-+if test x"$BLAS_LIBS" = x; then                                                
-+   AC_MSG_ERROR([Cannot find blas libraries])                                  
-+fi
-+AC_CHECK_LIB(amd, amd_aat)
-+
-+AC_ARG_WITH(cholmod,
-+    [AC_HELP_STRING([--with-cholmod],
-+		    [Use CHOLMOD for ordering methods])],
-+     [with_cholmod=$withval],
-+     [with_cholmod="yes"])
-+if test x$with_cholmod = xyes; then
-+   AC_CHECK_HEADERS(cholmod.h)
-+   AC_CHECK_LIB(cholmod, cholmod_solve, [], \
-+            [AC_MSG_ERROR([Cannot find libcholmod])])
-+
-+    PKG_PROG_PKG_CONFIG
-+    if test -n "$PKG_CONFIG"; then
-+       PKG_CHECK_MODULES([metis], [metis])
-+    else
-+	AC_CHECK_HEADERS(metis.h)
-+    	AC_CHECK_LIB(metis, METIS_NodeND, [metis_LIBS=-lmetis], \
-+		[AC_MSG_ERROR([CHOLMOD needs metis. Cannot find libmetis])])
-+    fi
-+    LIBS="${LIBS} ${metis_LIBS}"
-+    CPPFLAGS="${CPPFLAGS} ${metis_CFLAGS}"
-+else
-+    AC_DEFINE(NCHOLMOD)
-+fi
-+AM_CONDITIONAL([CHOLMOD], [test x$with_cholmod = xyes])
-+
-+
-+AC_CONFIG_FILES([Source/Makefile
-+		 Include/Makefile	
-+		 Demo/Makefile	
-+		 Makefile])
-+AC_OUTPUT
---- Demo/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am	2010-05-16 16:36:04.000000000 +0100
-@@ -0,0 +1,44 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+LDADD = $(top_builddir)/Source/libumfpack.la
-+
-+check_PROGRAMS = umfpack_simple \
-+	umfpack_di_demo \
-+	umfpack_dl_demo \
-+	umfpack_zi_demo \
-+	umfpack_zl_demo
-+
-+umfpack_%_demo.c: umfpack_xx_demo.c umfpack_%_demo.sed
-+	- sed -f umfpack_$*_demo.sed < umfpack_xx_demo.c > umfpack_$*_demo.c
-+
-+umfpack_simple_SOURCES = umfpack_simple.c
-+umfpack_di_demo_SOURCES = umfpack_di_demo.c
-+umfpack_dl_demo_SOURCES = umfpack_dl_demo.c
-+umfpack_zi_demo_SOURCES = umfpack_zi_demo.c
-+umfpack_zl_demo_SOURCES = umfpack_zl_demo.c
-+
-+check-local: $(check_PROGRAMS)
-+	@total=0; failed=0; \
-+	./umfpack_simple; \
-+	if [ "x$$?" = "x0" ]; then \
-+		echo "Test umfpack_simple PASSED."; \
-+	else \
-+		echo "Test umfpack_simple FAILED!!!"; \
-+		failed=$$(($$failed + 1)); \
-+	fi; \
-+	total=$$(($$total + 1)); \
-+	for i in *demo; do \
-+		echo "--- Testing $$i ---"; \
-+		./$$i$(EXEEXT) > my_$$i.out; \
-+		diff $$i.out my_$$i.out; \
-+		if [ "x$$?" = "x0" ]; then \
-+			echo "Test \`$$i' PASSED."; \
-+		else \
-+			echo "Test \`$$i' FAILED!!!"; \
-+			failed=$$(($$failed + 1)); \
-+		fi; \
-+		total=$$(($$total + 1)); \
-+	done; \
-+	if [ $$failed -gt 0 ]; then \
-+		echo "*** ERROR: $$failed/$$total tests failed!!!"; \
-+		echo "Please check the failures before reporting"; \
-+	fi
---- Include/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Include/Makefile.am	2010-05-16 16:36:04.000000000 +0100
-@@ -0,0 +1,34 @@
-+include_HEADERS = \
-+	umfpack.h \
-+	umfpack_col_to_triplet.h \
-+	umfpack_defaults.h \
-+	umfpack_free_numeric.h \
-+	umfpack_free_symbolic.h \
-+	umfpack_get_determinant.h \
-+	umfpack_get_lunz.h \
-+	umfpack_get_numeric.h \
-+	umfpack_get_symbolic.h \
-+	umfpack_global.h \
-+	umfpack_load_numeric.h \
-+	umfpack_load_symbolic.h \
-+	umfpack_numeric.h \
-+	umfpack_qsymbolic.h \
-+	umfpack_report_control.h \
-+	umfpack_report_info.h \
-+	umfpack_report_matrix.h \
-+	umfpack_report_numeric.h \
-+	umfpack_report_perm.h \
-+	umfpack_report_status.h \
-+	umfpack_report_symbolic.h \
-+	umfpack_report_triplet.h \
-+	umfpack_report_vector.h \
-+	umfpack_save_numeric.h \
-+	umfpack_save_symbolic.h \
-+	umfpack_scale.h \
-+	umfpack_solve.h \
-+	umfpack_symbolic.h \
-+	umfpack_tictoc.h \
-+	umfpack_timer.h \
-+	umfpack_transpose.h \
-+	umfpack_triplet_to_col.h \
-+	umfpack_wsolve.h
---- Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am	2010-05-16 16:36:04.000000000 +0100
-@@ -0,0 +1,2 @@
-+SUBDIRS = Source Include Demo
-+EXTRA_DIST = README.txt
---- Source/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am	2010-05-16 16:36:04.000000000 +0100
-@@ -0,0 +1,221 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+lib_LTLIBRARIES = libumfpack.la
-+
-+# non-user-callable umf_*.[ch] files:
-+UMFCH = umf_assemble umf_blas3_update umf_build_tuples umf_create_element \
-+	umf_dump umf_extend_front umf_garbage_collection umf_get_memory \
-+	umf_init_front umf_kernel umf_kernel_init umf_kernel_wrapup \
-+	umf_local_search umf_lsolve umf_ltsolve umf_mem_alloc_element \
-+	umf_mem_alloc_head_block umf_mem_alloc_tail_block \
-+	umf_mem_free_tail_block umf_mem_init_memoryspace \
-+	umf_report_vector umf_row_search umf_scale_column \
-+	umf_set_stats umf_solve umf_symbolic_usage umf_transpose \
-+	umf_tuple_lengths umf_usolve umf_utsolve umf_valid_numeric \
-+	umf_valid_symbolic umf_grow_front umf_start_front \
-+	umf_store_lu umf_scale
-+
-+# non-user-callable umf_*.[ch] files, int/UF_long versions only (no real/complex):
-+UMFINT = umf_analyze umf_apply_order umf_colamd umf_cholmod umf_free umf_fsize \
-+	umf_is_permutation umf_malloc umf_realloc umf_report_perm \
-+	umf_singletons
-+
-+# non-user-callable, created from umf_ltsolve.c, umf_utsolve.c,
-+# umf_triplet.c, and umf_assemble.c , with int/UF_long and real/complex versions:
-+UMF_CREATED = umf_lhsolve umf_uhsolve umf_triplet_map_nox \
-+	umf_triplet_nomap_x umf_triplet_nomap_nox umf_triplet_map_x \
-+	umf_assemble_fixq umf_store_lu_drop
-+
-+# non-user-callable, int/UF_long and real/complex versions:
-+UMF = $(UMF_CREATED) $(UMFCH)
-+
-+# user-callable umfpack_*.[ch] files (int/UF_long and real/complex):
-+UMFPACK = umfpack_col_to_triplet umfpack_defaults umfpack_free_numeric \
-+	umfpack_free_symbolic umfpack_get_numeric umfpack_get_lunz \
-+	umfpack_get_symbolic umfpack_get_determinant umfpack_numeric \
-+	umfpack_qsymbolic umfpack_report_control umfpack_report_info \
-+	umfpack_report_matrix umfpack_report_numeric umfpack_report_perm \
-+	umfpack_report_status umfpack_report_symbolic umfpack_report_triplet \
-+	umfpack_report_vector umfpack_solve umfpack_symbolic \
-+	umfpack_transpose umfpack_triplet_to_col umfpack_scale \
-+	umfpack_load_numeric umfpack_save_numeric \
-+	umfpack_load_symbolic umfpack_save_symbolic
-+
-+# user-callable, created from umfpack_solve.c (umfpack_wsolve.h exists, though):
-+# with int/UF_long and real/complex versions:
-+UMFPACKW = umfpack_wsolve
-+
-+USER = $(UMFPACKW) $(UMFPACK)
-+
-+# user-callable, only one version for int/UF_long, real/complex, *.[ch] files:
-+GENERIC = umfpack_timer umfpack_tictoc umfpack_global
-+
-+
-+#-------------------------------------------------------------------------------
-+# object files for each version
-+#-------------------------------------------------------------------------------
-+
-+DI = $(addsuffix .lo, $(subst umf_,umf_di_,$(UMF)) $(subst umfpack_,umfpack_di_,$(USER)))
-+DL = $(addsuffix .lo, $(subst umf_,umf_dl_,$(UMF)) $(subst umfpack_,umfpack_dl_,$(USER)))
-+ZI = $(addsuffix .lo, $(subst umf_,umf_zi_,$(UMF)) $(subst umfpack_,umfpack_zi_,$(USER)))
-+ZL = $(addsuffix .lo, $(subst umf_,umf_zl_,$(UMF)) $(subst umfpack_,umfpack_zl_,$(USER)))
-+II = $(addsuffix .lo, $(subst umf_,umf_i_,$(UMFINT)))
-+LL = $(addsuffix .lo, $(subst umf_,umf_l_,$(UMFINT)))
-+GN = $(addsuffix .lo, $(subst umfpack_,umfpack_gn_,$(GENERIC)))
-+
-+#-------------------------------------------------------------------------------
-+# compile each int and UF_long routine (with no real/complex version)
-+#-------------------------------------------------------------------------------
-+
-+umf_i_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DDINT -c $< -o $@
-+
-+umf_l_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DDLONG -c $< -o $@
-+
-+#-------------------------------------------------------------------------------
-+# compile each routine in the DI version
-+#-------------------------------------------------------------------------------
-+
-+umf_di_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DDINT -c $< -o $@
-+
-+umf_di_%hsolve.lo: umf_%tsolve.c $(INC)
-+	$(LTCOMPILE) -DDINT -DCONJUGATE_SOLVE -c $< -o $@
-+
-+umf_di_triplet_map_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDINT -DDO_MAP -DDO_VALUES -c $< -o $@
-+
-+umf_di_triplet_map_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDINT -DDO_MAP -c $< -o $@
-+
-+umf_di_triplet_nomap_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDINT -DDO_VALUES -c $< -o $@
-+
-+umf_di_triplet_nomap_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDINT -c $< -o $@
-+
-+umf_di_assemble_fixq.lo: umf_assemble.c $(INC)
-+	$(LTCOMPILE) -DDINT -DFIXQ -c $< -o $@
-+
-+umf_di_store_lu_drop.lo: umf_store_lu.c $(INC)
-+	$(LTCOMPILE) -DDINT -DDROP -c $< -o $@
-+
-+umfpack_di_wsolve.lo: umfpack_solve.c $(INC)
-+	$(LTCOMPILE) -DDINT -DWSOLVE -c $< -o $@
-+
-+umfpack_di_%.lo: umfpack_%.c $(INC)
-+	$(LTCOMPILE) -DDINT -c $< -o $@
-+
-+#-------------------------------------------------------------------------------
-+# compile each routine in the DL version
-+#-------------------------------------------------------------------------------
-+
-+umf_dl_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DDLONG -c $< -o $@
-+
-+umf_dl_%hsolve.lo: umf_%tsolve.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DCONJUGATE_SOLVE -c $< -o $@
-+
-+umf_dl_triplet_map_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DDO_MAP -DDO_VALUES -c $< -o $@
-+
-+umf_dl_triplet_map_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DDO_MAP -c $< -o $@
-+
-+umf_dl_triplet_nomap_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DDO_VALUES -c $< -o $@
-+
-+umf_dl_triplet_nomap_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DDLONG -c $< -o $@
-+
-+umf_dl_assemble_fixq.lo: umf_assemble.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DFIXQ -c $< -o $@
-+
-+umf_dl_store_lu_drop.lo: umf_store_lu.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DDROP -c $< -o $@
-+
-+umfpack_dl_wsolve.lo: umfpack_solve.c $(INC)
-+	$(LTCOMPILE) -DDLONG -DWSOLVE -c $< -o $@
-+
-+umfpack_dl_%.lo: umfpack_%.c $(INC)
-+	$(LTCOMPILE) -DDLONG -c $< -o $@
-+
-+#-------------------------------------------------------------------------------
-+# compile each routine in the ZI version
-+#-------------------------------------------------------------------------------
-+
-+umf_zi_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DZINT -c $< -o $@
-+
-+umf_zi_%hsolve.lo: umf_%tsolve.c $(INC)
-+	$(LTCOMPILE) -DZINT -DCONJUGATE_SOLVE -c $< -o $@
-+
-+umf_zi_triplet_map_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZINT -DDO_MAP -DDO_VALUES -c $< -o $@
-+
-+umf_zi_triplet_map_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZINT -DDO_MAP -c $< -o $@
-+
-+umf_zi_triplet_nomap_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZINT -DDO_VALUES -c $< -o $@
-+
-+umf_zi_triplet_nomap_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZINT -c $< -o $@
-+
-+umf_zi_assemble_fixq.lo: umf_assemble.c $(INC)
-+	$(LTCOMPILE) -DZINT -DFIXQ -c $< -o $@
-+
-+umf_zi_store_lu_drop.lo: umf_store_lu.c $(INC)
-+	$(LTCOMPILE) -DZINT -DDROP -c $< -o $@
-+
-+umfpack_zi_wsolve.lo: umfpack_solve.c $(INC)
-+	$(LTCOMPILE) -DZINT -DWSOLVE -c $< -o $@
-+
-+umfpack_zi_%.lo: umfpack_%.c $(INC)
-+	$(LTCOMPILE) -DZINT -c $< -o $@
-+
-+#-------------------------------------------------------------------------------
-+# compile each routine in the ZL version
-+#-------------------------------------------------------------------------------
-+
-+umf_zl_%.lo: umf_%.c $(INC)
-+	$(LTCOMPILE) -DZLONG -c $< -o $@
-+
-+umf_zl_%hsolve.lo: umf_%tsolve.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DCONJUGATE_SOLVE -c $< -o $@
-+
-+umf_zl_triplet_map_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DDO_MAP -DDO_VALUES -c $< -o $@
-+
-+umf_zl_triplet_map_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DDO_MAP -c $< -o $@
-+
-+umf_zl_triplet_nomap_x.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DDO_VALUES -c $< -o $@
-+
-+umf_zl_triplet_nomap_nox.lo: umf_triplet.c $(INC)
-+	$(LTCOMPILE) -DZLONG -c $< -o $@
-+
-+umf_zl_assemble_fixq.lo: umf_assemble.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DFIXQ -c $< -o $@
-+
-+umf_zl_store_lu_drop.lo: umf_store_lu.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DDROP -c $< -o $@
-+
-+umfpack_zl_wsolve.lo: umfpack_solve.c $(INC)
-+	$(LTCOMPILE) -DZLONG -DWSOLVE -c $< -o $@
-+
-+umfpack_zl_%.lo: umfpack_%.c $(INC)
-+	$(LTCOMPILE) -DZLONG -c $< -o $@
-+
-+#-------------------------------------------------------------------------------
-+# Create the generic routines (GN) using a generic rule
-+#-------------------------------------------------------------------------------
-+
-+umfpack_gn_%.lo: umfpack_%.c $(INC)
-+	$(LTCOMPILE) -c $< -o $@
-+
-+
-+libumfpack_la_SOURCES =
-+libumfpack_la_LIBADD = $(BLAS_LIBS) -lm \
-+	$(II) $(LL) $(GN) $(DI) $(DL) $(ZI) $(ZL)
diff --git a/sci-libs/umfpack/metadata.xml b/sci-libs/umfpack/metadata.xml
index 314c6c20a456..29f71ca077a0 100644
--- a/sci-libs/umfpack/metadata.xml
+++ b/sci-libs/umfpack/metadata.xml
@@ -1,17 +1,17 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-  <herd>sci</herd>
-  <longdescription lang="en">
+<herd>sci</herd>
+<longdescription lang="en">
   UMFPACK is a set of routines for solving unsymmetric sparse linear
   systems, Ax=b, using the Unsymmetric MultiFrontal method.
   Includes a C-callable interface, and a Fortran-callable interface.
   MATLAB routines are not included in the Gentoo package.
 </longdescription>
-  <use>
-    <flag name="cholmod">Use <pkg>sci-libs/cholmod</pkg> for matrix
+<use>
+  <flag name="cholmod">Use <pkg>sci-libs/cholmod</pkg> for matrix
   ordering</flag>
-    <flag name="metis">Use METIS via (<pkg>sci-libs/cholmod</pkg>)
+  <flag name="metis">Use METIS via (<pkg>sci-libs/cholmod</pkg>)
   for matrix partitioning</flag>
-  </use>
+</use>
 </pkgmetadata>
diff --git a/sci-libs/umfpack/umfpack-5.5.2.ebuild b/sci-libs/umfpack/umfpack-5.5.2.ebuild
deleted file mode 100644
index 0a27dd29521f..000000000000
--- a/sci-libs/umfpack/umfpack-5.5.2.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/umfpack-5.5.2.ebuild,v 1.7 2013/02/21 21:20:21 jlec Exp $
-
-EAPI=4
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils fortran-2 toolchain-funcs
-
-MY_PN=UMFPACK
-
-DESCRIPTION="Unsymmetric multifrontal sparse LU factorization library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/umfpack"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~x86-macos"
-IUSE="doc metis static-libs"
-
-RDEPEND="
-	virtual/blas
-	sci-libs/amd
-	metis? ( sci-libs/cholmod[metis] )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-PATCHES=( "${FILESDIR}"/5.5.1-autotools.patch )
-DOCS=( README.txt Doc/ChangeLog )
-
-S="${WORKDIR}/${MY_PN}"
-
-src_configure() {
-	myeconfargs+=(
-		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)"
-		$(use_with metis cholmod)
-	)
-	autotools-utils_src_configure
-}
-
-src_install() {
-	autotools-utils_src_install
-	use doc && dodoc Doc/*.pdf
-}
diff --git a/sci-libs/umfpack/umfpack-5.6.2.ebuild b/sci-libs/umfpack/umfpack-5.6.2.ebuild
new file mode 100644
index 000000000000..70c7c9e3ac33
--- /dev/null
+++ b/sci-libs/umfpack/umfpack-5.6.2.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/umfpack-5.6.2.ebuild,v 1.1 2013/06/25 00:22:42 bicatali Exp $
+
+EAPI=5
+
+inherit autotools-utils toolchain-funcs
+
+DESCRIPTION="Unsymmetric multifrontal sparse LU factorization library"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/umfpack"
+SRC_URI="http://dev.gentoo.org/~bicatali/distfiles/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc +cholmod static-libs"
+
+RDEPEND="
+	>=sci-libs/amd-1.3
+	sci-libs/suitesparseconfig
+	virtual/blas
+	cholmod? ( >=sci-libs/cholmod-2 )"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( virtual/latex-base )"
+
+src_configure() {
+	local myeconfargs+=(
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)"
+		$(use_with doc)
+		$(use_with cholmod)
+	)
+	autotools-utils_src_configure
+}