New package, dependency of sci-biology/mauve

Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64

12 files changed, 259 insertions, 0 deletions

diff --git a/sci-libs/libgenome/ChangeLog b/sci-libs/libgenome/ChangeLog
new file mode 100644
index 000000000000..a892e09ef4f0
--- /dev/null
+++ b/sci-libs/libgenome/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-libs/libgenome
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libgenome/ChangeLog,v 1.1 2009/04/03 16:37:15 weaver Exp $
+
+  03 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
+  New package sci-libs/libgenome, ebuild written by me
+
diff --git a/sci-libs/libgenome/libgenome-1.3.ebuild b/sci-libs/libgenome/libgenome-1.3.ebuild
new file mode 100644
index 000000000000..12f7f8baba22
--- /dev/null
+++ b/sci-libs/libgenome/libgenome-1.3.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libgenome/libgenome-1.3.ebuild,v 1.1 2009/04/03 16:37:15 weaver Exp $
+
+EAPI="2"
+
+MY_TAG="mauve-2-2-0-release"
+#ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/libGenome/tags/${MY_TAG}"
+
+#inherit subversion autotools
+inherit autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+#SRC_URI=""
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="doc? ( app-doc/doxygen )"
+RDEPEND=""
+
+#S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libgenome/libgenome-9999.ebuild b/sci-libs/libgenome/libgenome-9999.ebuild
new file mode 100644
index 000000000000..ab3409e4ae19
--- /dev/null
+++ b/sci-libs/libgenome/libgenome-9999.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libgenome/libgenome-9999.ebuild,v 1.1 2009/04/03 16:37:15 weaver Exp $
+
+EAPI="2"
+
+ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/libGenome/trunk"
+
+inherit subversion autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+SRC_URI=""
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS=""
+
+DEPEND="doc? ( app-doc/doxygen )"
+RDEPEND=""
+
+S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libgenome/metadata.xml b/sci-libs/libgenome/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-libs/libgenome/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-libs/libmems/ChangeLog b/sci-libs/libmems/ChangeLog
new file mode 100644
index 000000000000..0918c11dc1a3
--- /dev/null
+++ b/sci-libs/libmems/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-libs/libmems
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmems/ChangeLog,v 1.1 2009/04/03 16:36:24 weaver Exp $
+
+  03 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
+  New package sci-libs/libmems, ebuild written by me
+
diff --git a/sci-libs/libmems/libmems-1.6.ebuild b/sci-libs/libmems/libmems-1.6.ebuild
new file mode 100644
index 000000000000..5e6ad1e8eafb
--- /dev/null
+++ b/sci-libs/libmems/libmems-1.6.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmems/libmems-1.6.ebuild,v 1.1 2009/04/03 16:36:24 weaver Exp $
+
+EAPI="2"
+
+MY_TAG="mauve-2-2-0-release"
+#ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/libMems/tags/${MY_TAG}"
+
+#inherit subversion autotools
+inherit autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+#SRC_URI=""
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+CDEPEND=">=sci-libs/libgenome-1.3
+	>=sci-libs/libmuscle-3.7
+	dev-libs/boost"
+DEPEND="${CDEPEND}
+	doc? ( app-doc/doxygen )"
+RDEPEND="${CDEPEND}"
+
+#S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libmems/libmems-9999.ebuild b/sci-libs/libmems/libmems-9999.ebuild
new file mode 100644
index 000000000000..e6fc0b1d6214
--- /dev/null
+++ b/sci-libs/libmems/libmems-9999.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmems/libmems-9999.ebuild,v 1.1 2009/04/03 16:36:24 weaver Exp $
+
+EAPI="2"
+
+ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/libMems/trunk"
+
+inherit subversion autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+SRC_URI=""
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS=""
+
+CDEPEND=">=sci-libs/libgenome-1.3
+	>=sci-libs/libmuscle-3.7
+	dev-libs/boost"
+DEPEND="${CDEPEND}
+	doc? ( app-doc/doxygen )"
+RDEPEND="${CDEPEND}"
+
+S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libmems/metadata.xml b/sci-libs/libmems/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-libs/libmems/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-libs/libmuscle/ChangeLog b/sci-libs/libmuscle/ChangeLog
new file mode 100644
index 000000000000..7bf8d4ebeba8
--- /dev/null
+++ b/sci-libs/libmuscle/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-libs/libmuscle
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmuscle/ChangeLog,v 1.1 2009/04/03 16:38:07 weaver Exp $
+
+  03 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
+  New package sci-libs/libmuscle, ebuild written by me
+
diff --git a/sci-libs/libmuscle/libmuscle-3.7.ebuild b/sci-libs/libmuscle/libmuscle-3.7.ebuild
new file mode 100644
index 000000000000..19d9e9634b1c
--- /dev/null
+++ b/sci-libs/libmuscle/libmuscle-3.7.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmuscle/libmuscle-3.7.ebuild,v 1.1 2009/04/03 16:38:07 weaver Exp $
+
+EAPI="2"
+
+MY_TAG="mauve-2-2-0-release"
+#ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/muscle/tags/${MY_TAG}"
+
+#inherit subversion autotools
+inherit autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+#SRC_URI=""
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="doc? ( app-doc/doxygen )"
+RDEPEND=""
+
+#S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_compile() {
+	emake -j1 || die
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libmuscle/libmuscle-9999.ebuild b/sci-libs/libmuscle/libmuscle-9999.ebuild
new file mode 100644
index 000000000000..ac501bc9c4d6
--- /dev/null
+++ b/sci-libs/libmuscle/libmuscle-9999.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/libmuscle/libmuscle-9999.ebuild,v 1.1 2009/04/03 16:38:07 weaver Exp $
+
+EAPI="2"
+
+ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/muscle/trunk"
+
+inherit subversion autotools
+
+DESCRIPTION="Library for sci-biology/mauve"
+HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/"
+SRC_URI=""
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="doc"
+KEYWORDS=""
+
+DEPEND="doc? ( app-doc/doxygen )"
+RDEPEND=""
+
+S="${WORKDIR}"
+
+src_prepare() {
+	eautoreconf
+}
+
+src_compile() {
+	emake -j1 || die
+}
+
+src_install() {
+	emake install DESTDIR="${D}" || die
+}
diff --git a/sci-libs/libmuscle/metadata.xml b/sci-libs/libmuscle/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-libs/libmuscle/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>