diff options
| -rw-r--r-- | sci-biology/dialign-t/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/dialign-t/Manifest | 12 | ||||
| -rw-r--r-- | sci-biology/dialign-t/dialign-t-0.2.1.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/dialign-t/files/digest-dialign-t-0.2.1 | 3 | ||||
| -rw-r--r-- | sci-biology/dialign-t/metadata.xml | 9 |
5 files changed, 74 insertions, 0 deletions
diff --git a/sci-biology/dialign-t/ChangeLog b/sci-biology/dialign-t/ChangeLog new file mode 100644 index 000000000000..8d05a1c56b83 --- /dev/null +++ b/sci-biology/dialign-t/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/dialign-t +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/ChangeLog,v 1.1 2006/02/21 20:50:32 spyderous Exp $ + +*dialign-t-0.2.1 (21 Feb 2006) + + 21 Feb 2006; Donnie Berkholz <spyderous@gentoo.org>; +metadata.xml, + +dialign-t-0.2.1.ebuild: + New multiple sequence alignment package. Perhaps the most accurate and + fastest local aligner. + diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest new file mode 100644 index 000000000000..2ffc9309d6f5 --- /dev/null +++ b/sci-biology/dialign-t/Manifest @@ -0,0 +1,12 @@ +MD5 2c6b67c9344cd10917f2b562dce344ea ChangeLog 446 +RMD160 290e5d90f9611da5f5798c029ffcf702dab00ad8 ChangeLog 446 +SHA256 16812346cfe234dd960970e313f916927ad884c828e44571f09fe5c44116d80b ChangeLog 446 +MD5 6d36d03cfd276931b3e28533f1d3fc8d dialign-t-0.2.1.ebuild 1009 +RMD160 f208e037ad5842eb064a1c7b22fef562b900b487 dialign-t-0.2.1.ebuild 1009 +SHA256 44a72b3a96915240d32cc5c9e14be405ed5a5ba9b7347f5ed550d5f0c6e5d7e8 dialign-t-0.2.1.ebuild 1009 +MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250 +RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250 +SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250 +MD5 af1bfbb0777267a03e889b08173f2757 metadata.xml 248 +RMD160 6488d9f1ef3e05e6ac5a29ddcc818e5ead0a5230 metadata.xml 248 +SHA256 de0ad7dc383b462c407cae015684d27c090455eac87c6f0f9ff581ef6e0b5b27 metadata.xml 248 diff --git a/sci-biology/dialign-t/dialign-t-0.2.1.ebuild b/sci-biology/dialign-t/dialign-t-0.2.1.ebuild new file mode 100644 index 000000000000..0eea4e6dff6b --- /dev/null +++ b/sci-biology/dialign-t/dialign-t-0.2.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/dialign-t-0.2.1.ebuild,v 1.1 2006/02/21 20:50:32 spyderous Exp $ + +inherit multilib toolchain-funcs + +MY_P="DIALIGN-T_${PV}" +DESCRIPTION="An improved algorithm for segment-based multiple sequence alignment" +HOMEPAGE="http://dialign-t.gobics.de/" +SRC_URI="http://dialign-t.gobics.de/${MY_P}.tar.gz" +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +src_compile() { + cd ${S}/source + emake clean + emake \ + CPPFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + DESTTREE="/usr" dobin ${S}/source/dialign-t + dohtml ${S}/doc/html/* + dodoc ${S}/doc/user_guide* + insinto /usr/$(get_libdir)/${PN}/conf + doins ${S}/conf/* +} + +pkg_postinst() { + ewarn "The configuration directory is" + ewarn "${ROOT}usr/$(get_libdir)/${PN}/conf" + ewarn "You will need to pass this to ${PN} on every run." +} diff --git a/sci-biology/dialign-t/files/digest-dialign-t-0.2.1 b/sci-biology/dialign-t/files/digest-dialign-t-0.2.1 new file mode 100644 index 000000000000..fd423eb5e37f --- /dev/null +++ b/sci-biology/dialign-t/files/digest-dialign-t-0.2.1 @@ -0,0 +1,3 @@ +MD5 d1d4fc381a009c68387e159b78b33801 DIALIGN-T_0.2.1.tar.gz 1635888 +RMD160 a43807668354120b873cad0120a7691b6860ca28 DIALIGN-T_0.2.1.tar.gz 1635888 +SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930 DIALIGN-T_0.2.1.tar.gz 1635888 diff --git a/sci-biology/dialign-t/metadata.xml b/sci-biology/dialign-t/metadata.xml new file mode 100644 index 000000000000..211b8bd0f0a4 --- /dev/null +++ b/sci-biology/dialign-t/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<maintainer> +<email>spyderous@gentoo.org</email> +<name>Donnie Berkholz</name> +</maintainer> +</pkgmetadata> |