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diff --git a/app-sci/emboss/emboss-2.9.0.ebuild b/app-sci/emboss/emboss-2.9.0.ebuild
new file mode 100644
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+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/emboss-2.9.0.ebuild,v 1.1 2004/07/20 00:34:01 ribosome Exp $
+
+DESCRIPTION="The European Molecular Biology Open Software Suite: a sequence analysis package."
+HOMEPAGE="http://emboss.sourceforge.net/"
+SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
+LICENSE="GPL-2 LGPL-2"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="X png icc no-biodata"
+
+RDEPEND="X? ( virtual/x11 )
+	png? (
+		sys-libs/zlib
+		media-libs/libpng
+		>=media-libs/gd-1.8
+	)
+	app-sci/primer3
+	app-sci/clustalw"
+
+PDEPEND="!no-biodata? (
+		app-sci/aaindex
+		app-sci/cutg
+		app-sci/prints
+		app-sci/prosite
+		app-sci/rebase
+		app-sci/transfac
+	)"
+
+DEPEND="icc? ( dev-lang/icc )
+	${RDEPEND}"
+
+S=${WORKDIR}/EMBOSS-${PV}
+
+src_compile() {
+	if use icc; then
+		CC=/opt/intel/compiler80/bin/icc
+		CXX=/opt/intel/compiler80/bin/icc
+	fi
+	EXTRA_CONF="--includedir=${D}/usr/include/emboss"
+	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
+	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
+
+	econf ${EXTRA_CONF} || die
+	# Do not install the JEMBOSS component (the --without-java configure option
+	# does not work). JEMBOSS will be available as a separate package.
+	sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile
+	emake || die
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
+
+	# Install env file for setting libplplot and acd files path.
+	insinto /etc/env.d
+	newins ${FILESDIR}/22emboss-r1 22emboss
+
+	# Symlink preinstalled docs to /usr/share/doc.
+	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
+	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
+	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
+}