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Diffstat (limited to 'dev-java/biojava/biojava-1.7.ebuild')
| -rw-r--r-- | dev-java/biojava/biojava-1.7.ebuild | 73 |
1 files changed, 73 insertions, 0 deletions
diff --git a/dev-java/biojava/biojava-1.7.ebuild b/dev-java/biojava/biojava-1.7.ebuild new file mode 100644 index 000000000000..e3bcd9cb729c --- /dev/null +++ b/dev-java/biojava/biojava-1.7.ebuild @@ -0,0 +1,73 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-java/biojava/biojava-1.7.ebuild,v 1.1 2009/07/10 19:11:51 weaver Exp $ + +# TODO: +# -Fix javadoc generation OutOfMemoryError +# -Add launchers for 2 apps in biojava-apps.jar +# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag) + +EAPI=2 + +#JAVA_PKG_IUSE="doc source test" +JAVA_PKG_IUSE="source test" + +inherit eutils java-pkg-2 java-ant-2 + +DESCRIPTION="A Java framework for processing biological data" +HOMEPAGE="http://biojava.org" +SRC_URI="http://www.biojava.org/download/bj17/all/${P}-all.jar" +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +COMMON_DEPEND="dev-java/jgrapht:0 + dev-java/commons-cli:1 + dev-java/commons-dbcp:0 + dev-java/commons-pool:0 + dev-java/commons-collections:0 + dev-java/bytecode:0" + +RDEPEND=">=virtual/jre-1.5 + ${COMMON_DEPEND}" +DEPEND=">=virtual/jdk-1.5 + app-arch/unzip + ${COMMON_DEPEND} + test? + ( + dev-java/junit:4 + dev-java/ant-junit4 + )" + +S="${WORKDIR}/biojava-${PV}" + +JAVA_ANT_IGNORE_SYSTEM_CLASSES="true" + +src_prepare() { + einfo "Removing bundled jars..." + find . -name "*.jar" -print -delete + java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar + java-pkg_jar-from commons-cli-1 + java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar + java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar + java-pkg_jar-from bytecode +} + +src_compile() { + #ANT_OPTS="${ANT_OPTS} -Xmx512m" + eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all) +} + +src_install() { + java-pkg_newjar ant-build/biojava.jar ${PN}.jar + java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar + java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar + #use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos} + use source && java-pkg_dosrc {src,apps,demos}/org +} + +src_test() { + java-pkg_jar-from junit-4 junit.jar junit-4.4.jar + ANT_TASKS="ant-junit4" eant runtests +} |