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Diffstat (limited to 'sci-biology/mummer/mummer-3.20.ebuild')
| -rw-r--r-- | sci-biology/mummer/mummer-3.20.ebuild | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/mummer/mummer-3.20.ebuild b/sci-biology/mummer/mummer-3.20.ebuild new file mode 100644 index 000000000000..11cf40d66f48 --- /dev/null +++ b/sci-biology/mummer/mummer-3.20.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.20.ebuild,v 1.1 2008/05/24 04:10:30 weaver Exp $ + +MY_P="MUMmer${PV}" +DESCRIPTION="A rapid whole genome aligner" +HOMEPAGE="http://mummer.sourceforge.net/" +SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="doc" +KEYWORDS="~x86" + +DEPEND="" +RDEPEND="" + +S=${WORKDIR}/${MY_P} + +src_compile() { + emake || die "emake failed" + + sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ + -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ + -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ + -e 's|\(set bindir = \).*|\1/usr/bin|' \ + -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ + -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ + scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" + sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh +} + +src_install() { + dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ + exact-tandems promer repeat-match show-aligns gaps mummer \ + show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* + newbin annotate mummer-annotate + + insinto /usr/share/${PN}/scripts + doins scripts/{*.awk,*.csh,*.pl} + insinto /usr/share/${PN}/lib + doins scripts/Foundation.pm + + dodoc ACKNOWLEDGEMENTS ChangeLog README + insinto /usr/share/doc/${PF} + use doc && doins -r docs +} |