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# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/emboss-2.8.0-r3.ebuild,v 1.1 2004/07/15 02:06:20 ribosome Exp $
DESCRIPTION="The European Molecular Biology Open Software Suite: a sequence analysis package."
HOMEPAGE="http://www.emboss.org/"
SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
LICENSE="GPL-2 LGPL-2"
SLOT="0"
KEYWORDS="~x86"
IUSE="X png icc no-biodata"
RDEPEND="X? ( virtual/x11 )
png? (
sys-libs/zlib
media-libs/libpng
>=media-libs/gd-1.8
)
app-sci/primer3
app-sci/clustalw"
PDEPEND="!no-biodata? (
app-sci/aaindex
app-sci/cutg
app-sci/prints
app-sci/prosite
app-sci/rebase
app-sci/transfac
)"
DEPEND="icc? ( dev-lang/icc )
${RDEPEND}"
S=${WORKDIR}/EMBOSS-${PV}
src_compile() {
if use icc; then
CC=/opt/intel/compiler80/bin/icc
CXX=/opt/intel/compiler80/bin/icc
fi
local EXTRA_CONF
! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
econf ${EXTRA_CONF} || die
# Do not install the JEMBOSS component (the --without-java configure option
# does not work). JEMBOSS will be available as a separate package.
sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile
emake || die
}
src_install() {
einstall || die
dodoc AUTHORS COPYING ChangeLog FAQ INSTALL LICENSE README THANKS NEWS
# Install env file for setting libplplot and acd files path.
insinto /etc/env.d
newins ${FILESDIR}/22emboss-r1 22emboss
# Include files necessary for EMBASSY packages and EMBOSS development.
insinto /usr/include/${PN}
doins plplot/*.h
doins ajax/*.h
doins nucleus/*.h
# Symlink preinstalled docs to /usr/share/doc.
dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
}
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