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| author |   Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2022-06-23 00:31:16 +0500 |
|---|---|---|
| committer | Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2022-06-25 22:42:15 +0500 |
| commit | bec2b834dd663f30d9bc508ee6043959b50fccfb (patch) | |
| tree | 536917e63d6ba92e509755a318fbd0231ebe6c51 /sci-biology | |
| parent | media-video/uxplay: version bump to 1.53, drop old (diff) | |
| download | guru-bec2b834dd663f30d9bc508ee6043959b50fccfb.tar.gz guru-bec2b834dd663f30d9bc508ee6043959b50fccfb.tar.bz2 guru-bec2b834dd663f30d9bc508ee6043959b50fccfb.zip | |
sci-biology/cmdock: boinc fix
See https://www.sidock.si/sidock/forum_thread.php?id=125&postid=1427
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cmdock/cmdock-0.1.4-r2.ebuild (renamed from sci-biology/cmdock/cmdock-0.1.4-r1.ebuild) | 28 |
1 files changed, 20 insertions, 8 deletions
diff --git a/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild b/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild index cf79531ec..422d56da2 100644 --- a/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild +++ b/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild @@ -3,7 +3,7 @@ EAPI=8 -PYTHON_COMPAT=( python3_{8..11} pypy3 ) +PYTHON_COMPAT=( python3_{8..11} ) BOINC_APP_OPTIONAL="true" @@ -11,27 +11,32 @@ DOCS_BUILDER="sphinx" DOCS_AUTODOC=0 DOCS_DIR="docs" -inherit python-any-r1 boinc-app docs flag-o-matic meson +inherit python-single-r1 boinc-app docs flag-o-matic meson optfeature DESCRIPTION="Program for docking ligands to proteins and nucleic acids" HOMEPAGE="https://gitlab.com/Jukic/cmdock" SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz" S="${WORKDIR}/${PN}-v${PV}" +INSTALL_PREFIX="${EPREFIX}/opt/${P}" LICENSE="LGPL-3 ZLIB" SLOT="0/${PV}" KEYWORDS="~amd64" IUSE="apidoc boinc cpu_flags_x86_sse2" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" - dev-lang/perl + ${PYTHON_DEPS} + dev-lang/perl:* boinc? ( sci-misc/boinc-wrapper ) " -BDEPEND=" +DEPEND=" dev-cpp/eigen:3 dev-cpp/indicators >=dev-cpp/pcg-cpp-0.98.1_p20210406-r1 dev-libs/cxxopts +" +BDEPEND=" doc? ( app-doc/doxygen ) " @@ -46,8 +51,12 @@ BOINC_APP_HELPTEXT=\ is to attach it to SiDock@home BOINC project." foreach_wrapper_job() { - sed -i "$1" \ - -e "s:@PREFIX@:${EPREFIX}/opt/${P}:g" || die + sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die +} + +src_prepare() { + default + python_fix_shebang "${S}"/bin } src_configure() { @@ -75,19 +84,22 @@ src_compile() { src_install() { meson_src_install + python_optimize "${ED}"/opt/${P}/ if use boinc; then doappinfo "${FILESDIR}"/app_info_${PV}.xml dowrapper ${PN}-boinc-zcp # install a blank file + touch "${T}"/docking_out || die insinto $(get_project_root) - insopts --owner boinc --group boinc - : newins - docking_out.sd + insopts -m 0644 --owner boinc --group boinc + doins "${T}"/docking_out fi } pkg_postinst() { + optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]" use boinc && boinc-app_pkg_postinst } |