2017-03-01 20:44:02 UTC

9 files changed, 28 insertions, 57 deletions

diff --git a/metadata/md5-cache/app-crypt/gnupg-2.1.19 b/metadata/md5-cache/app-crypt/gnupg-2.1.19
new file mode 100644
index 000000000000..ee773f30df27
--- /dev/null
+++ b/metadata/md5-cache/app-crypt/gnupg-2.1.19
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile configure install
+DEPEND=>=dev-libs/npth-1.2 >=dev-libs/libassuan-2.4.3 >=dev-libs/libgcrypt-1.7.3 >=dev-libs/libgpg-error-1.24 >=dev-libs/libksba-1.3.4 >=net-misc/curl-7.10 gnutls? ( >=net-libs/gnutls-3.0:0= ) sys-libs/zlib ldap? ( net-nds/openldap ) bzip2? ( app-arch/bzip2 ) readline? ( sys-libs/readline:0= ) smartcard? ( usb? ( virtual/libusb:0 ) ) tofu? ( >=dev-db/sqlite-3.7 ) app-crypt/pinentry !app-crypt/dirmngr nls? ( sys-devel/gettext ) doc? ( sys-apps/texinfo )
+DESCRIPTION=The GNU Privacy Guard, a GPL OpenPGP implementation
+EAPI=6
+HOMEPAGE=http://www.gnupg.org/
+IUSE=bzip2 doc +gnutls ldap nls readline selinux +smartcard tofu tools usb wks-server
+KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~ppc-aix ~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris
+LICENSE=GPL-3
+RDEPEND=>=dev-libs/npth-1.2 >=dev-libs/libassuan-2.4.3 >=dev-libs/libgcrypt-1.7.3 >=dev-libs/libgpg-error-1.24 >=dev-libs/libksba-1.3.4 >=net-misc/curl-7.10 gnutls? ( >=net-libs/gnutls-3.0:0= ) sys-libs/zlib ldap? ( net-nds/openldap ) bzip2? ( app-arch/bzip2 ) readline? ( sys-libs/readline:0= ) smartcard? ( usb? ( virtual/libusb:0 ) ) tofu? ( >=dev-db/sqlite-3.7 ) app-crypt/pinentry !app-crypt/dirmngr selinux? ( sec-policy/selinux-gpg ) nls? ( virtual/libintl )
+SLOT=0
+SRC_URI=mirror://gnupg/gnupg/gnupg-2.1.19.tar.bz2
+_eclass_exported_funcs=src_configure:- src_compile:- src_install:-
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=9d1a760650a5f202dc74340dde7984d5
diff --git a/metadata/md5-cache/dev-cpp/sparsehash-2.0.2 b/metadata/md5-cache/dev-cpp/sparsehash-2.0.2
deleted file mode 100644
index d4cc8195cc55..000000000000
--- a/metadata/md5-cache/dev-cpp/sparsehash-2.0.2
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=install
-DESCRIPTION=An extremely memory-efficient hash_map implementation
-EAPI=4
-HOMEPAGE=https://github.com/google/sparsehash
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
-LICENSE=BSD
-SLOT=0
-SRC_URI=https://sparsehash.googlecode.com/files/sparsehash-2.0.2.tar.gz
-_eclass_exported_funcs=src_install:-
-_md5_=0b2cc91010fec5c75a44c6d7752f96e2
diff --git a/metadata/md5-cache/sci-libs/buddy-2.2 b/metadata/md5-cache/sci-libs/buddy-2.2
deleted file mode 100644
index b21215bf26fe..000000000000
--- a/metadata/md5-cache/sci-libs/buddy-2.2
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=compile install
-DESCRIPTION=Binary Decision Diagram Package
-EAPI=0
-HOMEPAGE=http://www.itu.dk/research/buddy/
-KEYWORDS=x86 ~ppc
-LICENSE=buddy
-SLOT=0
-SRC_URI=http://www.itu.dk/research/buddy/buddy22.tar.gz
-_eclass_exported_funcs=src_compile:- src_install:-
-_md5_=06f64cb8408be26e0cb8f0546a88c006
diff --git a/metadata/md5-cache/sci-libs/cxsparse-3.1.2 b/metadata/md5-cache/sci-libs/cxsparse-3.1.2-r1
index fb69e1c70644..873e65bcc94a 100644
--- a/metadata/md5-cache/sci-libs/cxsparse-3.1.2
+++ b/metadata/md5-cache/sci-libs/cxsparse-3.1.2-r1
@@ -11,4 +11,4 @@ SLOT=0
 SRC_URI=https://dev.gentoo.org/~bicatali/distfiles/cxsparse-3.1.2.tar.bz2
 _eclass_exported_funcs=src_configure:multilib-minimal src_compile:multilib-minimal src_test:multilib-minimal src_install:multilib-minimal
 _eclasses_=multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multilib-build	eed53a6313267c9fbcd35fc384bd0087	multilib-minimal	9139c3a57e077cb8e0d0f73ceb080b89	toolchain-funcs	53b75b4a49cf3e61530a523804045432
-_md5_=674ebe7443cc619833001b46b9cb8080
+_md5_=78017f91afa733865e6b465137d0e3b6
diff --git a/metadata/md5-cache/sci-libs/libmuscle-3.7-r2 b/metadata/md5-cache/sci-libs/libmuscle-3.7-r2
deleted file mode 100644
index 5b63b9a62324..000000000000
--- a/metadata/md5-cache/sci-libs/libmuscle-3.7-r2
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=doc? ( app-doc/doxygen ) !sci-biology/muscle !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=Library for sci-biology/mauve
-EAPI=2
-HOMEPAGE=http://gel.ahabs.wisc.edu/mauve/
-IUSE=doc
-KEYWORDS=~amd64 ~x86
-LICENSE=public-domain
-SLOT=0
-SRC_URI=mirror://gentoo/libmuscle-3.7-r1.tar.bz2
-_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
-_md5_=2731be9c111a1cfdcff3b82d76942e60
diff --git a/metadata/md5-cache/sci-libs/libmuscle-3.7-r1 b/metadata/md5-cache/sci-libs/libmuscle-3.7-r3
index b80d1ca8590e..6bf97b7ab16c 100644
--- a/metadata/md5-cache/sci-libs/libmuscle-3.7-r1
+++ b/metadata/md5-cache/sci-libs/libmuscle-3.7-r3
@@ -1,13 +1,14 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=doc? ( app-doc/doxygen ) !sci-biology/muscle !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEFINED_PHASES=configure install prepare
+DEPEND=!sci-biology/muscle doc? ( app-doc/doxygen ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Library for sci-biology/mauve
-EAPI=2
+EAPI=6
 HOMEPAGE=http://gel.ahabs.wisc.edu/mauve/
-IUSE=doc
+IUSE=doc static-libs
 KEYWORDS=~amd64 ~x86
 LICENSE=public-domain
+RDEPEND=!sci-biology/muscle
 SLOT=0
 SRC_URI=mirror://gentoo/libmuscle-3.7-r1.tar.bz2
-_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
+_eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
 _eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
-_md5_=04f1383703bda38fbf2c1fcd6d655bb1
+_md5_=e1074f5d70d2cc31e3aca7fbd1f1ae68
diff --git a/metadata/md5-cache/sci-libs/libmuscle-9999 b/metadata/md5-cache/sci-libs/libmuscle-9999
deleted file mode 100644
index d443e20bcd13..000000000000
--- a/metadata/md5-cache/sci-libs/libmuscle-9999
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install preinst prepare unpack
-DEPEND=doc? ( app-doc/doxygen ) !sci-biology/muscle || ( dev-vcs/subversion[http] dev-vcs/subversion[webdav-neon] dev-vcs/subversion[webdav-serf] ) net-misc/rsync !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=Library for sci-biology/mauve
-EAPI=2
-HOMEPAGE=http://gel.ahabs.wisc.edu/mauve/
-IUSE=doc
-LICENSE=public-domain
-SLOT=0
-_eclass_exported_funcs=pkg_preinst:subversion src_unpack:subversion src_prepare:- src_compile:- src_install:-
-_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	subversion	a5d5826a85609611f098c0553eb24cc1	toolchain-funcs	53b75b4a49cf3e61530a523804045432
-_md5_=2a61f1dc382f8dcc956af602b7a74bec
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index 8172cbf5b4ae..37d6aa12685c 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -533,7 +533,7 @@ app-crypt/gentoo-keys 201607021514: A Openpgp/gpg keyring of official Gentoo rel
 app-crypt/gifshuffle 2.0: GIF colourmap steganography
 app-crypt/gkeys 0.2 9999: An OpenPGP/GPG key management tool and python libs
 app-crypt/gkeys-gen 0.2 9999: Tool for generating OpenPGP/GPG keys using a specifications file
-app-crypt/gnupg 1.4.21 2.1.15 2.1.18: The GNU Privacy Guard, a GPL OpenPGP implementation
+app-crypt/gnupg 1.4.21 2.1.15 2.1.18 2.1.19: The GNU Privacy Guard, a GPL OpenPGP implementation
 app-crypt/gnupg-pkcs11-scd 0.7.4: PKCS#11 support for GnuPG
 app-crypt/gorilla 1.4-r1: Password Safe in secure way with GUI interface
 app-crypt/gpa 0.9.4 0.9.9 0.9.10: The GNU Privacy Assistant (GPA) is a graphical user interface for GnuPG
@@ -2875,7 +2875,7 @@ dev-cpp/pngpp 0.2.9: A simple but powerful C++ interface to libpng
 dev-cpp/pstreams 0.7.0 0.8.1 1.0.0 1.0.1: C++ wrapper for the POSIX.2 functions popen(3) and pclose(3)
 dev-cpp/random123 1.09-r1: library of counter-based random number generators (CBRNGs)
 dev-cpp/rudiments 0.46 0.51: C++ class library for daemons, clients and servers
-dev-cpp/sparsehash 1.10 2.0.2 2.0.3: An extremely memory-efficient hash_map implementation
+dev-cpp/sparsehash 1.10 2.0.3: An extremely memory-efficient hash_map implementation
 dev-cpp/tbb 4.3.20150611 4.3.20150611-r1 2017.20161128: High level abstract threading library
 dev-cpp/tclap 1.2.1: Simple templatized C++ library for parsing command line arguments
 dev-cpp/threadpool 0.2.5-r1: A cross-platform C++ thread pool library (built on top of Boost)
@@ -16174,7 +16174,7 @@ sci-libs/blas-reference 20070226-r4 20151113-r1 20161223: Basic Linear Algebra S
 sci-libs/bliss 0.73: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs
 sci-libs/bmrblib 1.0.3: API abstracting the BioMagResBank (BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/)
 sci-libs/btf 1.1.3 1.2.0: Algorithm for matrix permutation into block triangular form
-sci-libs/buddy 2.2 2.4-r1: Binary Decision Diagram Package
+sci-libs/buddy 2.4-r1: Binary Decision Diagram Package
 sci-libs/camd 2.3.1: Library to order a sparse matrix prior to Cholesky factorization
 sci-libs/cbflib 0.9.3.3: Library providing a simple mechanism for accessing CBF files and imgCIF files
 sci-libs/cblas-reference 20030223-r6 20151113-r2 20161223: C wrapper interface to the F77 reference BLAS implementation
@@ -16228,7 +16228,7 @@ sci-libs/colamd 2.8.0: Column approximate minimum degree ordering algorithm
 sci-libs/colpack 1.0.6 1.0.9-r1: C++ algorithms for specialized vertex coloring problems
 sci-libs/coot-data 3: Data for the Crystallographic Object-Oriented Toolkit
 sci-libs/cqrlib 1.1.3: Utility library for quaternion arithmetic / rotation math (ANSI C implemented)
-sci-libs/cxsparse 2.2.1 2.2.6 3.1.1 3.1.2: Extended sparse matrix package
+sci-libs/cxsparse 2.2.1 2.2.6 3.1.1 3.1.2-r1: Extended sparse matrix package
 sci-libs/dcmtk 3.6.0: The DICOM Toolkit
 sci-libs/deap 0.9.1 1.0.0 1.0.1: Novel evolutionary computation framework
 sci-libs/djbfft 0.76-r2: Extremely fast library for floating-point convolution
@@ -16291,7 +16291,7 @@ sci-libs/libh2o 0.2.1 9999: Library of routines for IF97 water & steam propertie
 sci-libs/libh2oxx 0.2 9999: C++ bindings for libh2o
 sci-libs/libint 1.1.6 2.0.5: Matrix elements (integrals) evaluation over Cartesian Gaussian functions
 sci-libs/libmems 1.6_p1-r3 9999: Library for sci-biology/mauve
-sci-libs/libmuscle 3.7-r1 3.7-r2 9999: Library for sci-biology/mauve
+sci-libs/libmuscle 3.7-r3: Library for sci-biology/mauve
 sci-libs/libnova 0.12.3 0.14.0 0.15.0: Celestial Mechanics and Astronomical Calculation Library
 sci-libs/liborigin 20110829: Library for reading OriginLab OPJ project files
 sci-libs/libpdb 991112 991112-r1: PDB Record I/O Libraries -- c version
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index 08a64030bdba..74a3007af996 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Wed, 01 Mar 2017 20:03:50 +0000
+Wed, 01 Mar 2017 20:44:03 +0000