dev-lang/julia: version bump to 0.4.3 (bug 564338)

Package-Manager: portage-2.2.26

1 files changed, 140 insertions, 0 deletions

diff --git a/dev-lang/julia/files/julia-0.4.3-fix_build_system.patch b/dev-lang/julia/files/julia-0.4.3-fix_build_system.patch
new file mode 100644
index 000000000000..c83f0431d7df
--- /dev/null
+++ b/dev-lang/julia/files/julia-0.4.3-fix_build_system.patch
@@ -0,0 +1,140 @@
+diff --git a/Make.inc b/Make.inc
+index da01e38..c751607 100644
+--- a/Make.inc
++++ b/Make.inc
+@@ -297,7 +297,7 @@ JCFLAGS = -std=gnu99 -pipe $(fPIC) -fno-strict-aliasing -D_FILE_OFFSET_BITS=64
+ JCPPFLAGS =
+ JCXXFLAGS = -pipe $(fPIC) -fno-rtti
+ DEBUGFLAGS = -O0 -ggdb3 -DJL_DEBUG_BUILD -fstack-protector-all
+-SHIPFLAGS = -O3 -ggdb3 -falign-functions
++SHIPFLAGS = GENTOOCFLAGS
+ endif
+ 
+ ifeq ($(USECLANG),1)
+@@ -307,7 +307,7 @@ JCFLAGS = -pipe $(fPIC) -fno-strict-aliasing -D_FILE_OFFSET_BITS=64
+ JCPPFLAGS =
+ JCXXFLAGS = -pipe $(fPIC) -fno-rtti
+ DEBUGFLAGS = -O0 -g -DJL_DEBUG_BUILD -fstack-protector-all
+-SHIPFLAGS = -O3 -g
++SHIPFLAGS =  GENTOOCFLAGS
+ ifeq ($(OS), Darwin)
+ ifeq ($(USE_LIBCPP), 1)
+ CC += -stdlib=libc++ -mmacosx-version-min=10.7
+@@ -334,7 +334,7 @@ JCFLAGS = -std=gnu11 -pipe $(fPIC) -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -
+ JCPPFLAGS =
+ JCXXFLAGS = -pipe $(fPIC) -fno-rtti
+ DEBUGFLAGS = -O0 -g -DJL_DEBUG_BUILD -fstack-protector-all
+-SHIPFLAGS = -O3 -g -falign-functions
++SHIPFLAGS = GENTOOCFLAGS
+ endif
+ 
+ ifeq ($(USECCACHE), 1)
+diff --git a/deps/Makefile b/deps/Makefile
+index 051b23d..881ba68 100644
+--- a/deps/Makefile
++++ b/deps/Makefile
+@@ -862,7 +862,7 @@ OPENSPECFUN_TAR_URL = https://api.github.com/repos/JuliaLang/openspecfun/tarball
+ $(eval $(call git-external,openspecfun,OPENSPECFUN,Makefile,libopenspecfun.$(SHLIB_EXT)))
+ 
+ # issue 8799
+-OPENSPECFUN_CFLAGS = -O3 -std=c99
++OPENSPECFUN_CFLAGS = GENTOOCFLAGS -std=c99
+ ifeq ($(USEICC),1)
+   OPENSPECFUN_CFLAGS += -fp-model precise
+ endif
+@@ -902,7 +902,7 @@ DSFMT_OBJ_SOURCE = dsfmt-$(DSFMT_VER)/libdSFMT.$(SHLIB_EXT)
+ 
+ DSFMT_CFLAGS = $(CFLAGS) -DNDEBUG -DDSFMT_MEXP=19937 $(fPIC) -DDSFMT_DO_NOT_USE_OLD_NAMES
+ ifneq ($(USEMSVC), 1)
+-DSFMT_CFLAGS += -O3 -finline-functions -fomit-frame-pointer -fno-strict-aliasing \
++DSFMT_CFLAGS += GENTOOCFLAGS -finline-functions -fno-strict-aliasing \
+ 		--param max-inline-insns-single=1800 -Wmissing-prototypes -Wall  -std=c99 -shared
+ else
+ DSFMT_CFLAGS += -Wl,-dll,-def:../libdSFMT.def
+@@ -1181,7 +1181,7 @@ endif
+ endif
+ 
+ libgfortblas.$(SHLIB_EXT): gfortblas.c gfortblas.alias
+-	$(CC) -Wall -O3 $(CPPFLAGS) $(CFLAGS) $(fPIC) -shared $< -o $@ -pipe \
++	$(CC) -Wall GENTOOCFLAGS $(CPPFLAGS) $(CFLAGS) $(fPIC) -shared $< -o $@ -pipe \
+ 				-Wl,-reexport_framework,Accelerate -Wl,-alias_list,gfortblas.alias
+ $(build_shlibdir)/libgfortblas.$(SHLIB_EXT): libgfortblas.$(SHLIB_EXT)
+ 	cp -f $< $@
+@@ -1607,10 +1607,10 @@ install-suitesparse: $(SUITESPARSE_OBJ_TARGET) install-suitesparse-wrapper
+ # SUITESPARSE WRAPPER
+ 
+ ifeq ($(USE_SYSTEM_SUITESPARSE), 1)
+-SUITESPARSE_INC = -I /usr/include/suitesparse
++
+ SUITESPARSE_LIB = -lumfpack -lcholmod -lamd -lcamd -lcolamd -lspqr
+ else
+-SUITESPARSE_INC = -I SuiteSparse-$(SUITESPARSE_VER)/CHOLMOD/Include -I SuiteSparse-$(SUITESPARSE_VER)/SuiteSparse_config -I SuiteSparse-$(SUITESPARSE_VER)/SPQR/Include
++
+ SUITESPARSE_LIB = -L$(build_shlibdir) -lcholmod -lumfpack -lspqr $(RPATH_ORIGIN)
+ $(build_shlibdir)/libsuitesparse_wrapper.$(SHLIB_EXT):  $(SUITESPARSE_OBJ_TARGET)
+ endif
+diff --git a/deps/checksums/Rmath-julia-0.1.tar.gz/sha512 b/deps/checksums/Rmath-julia-0.1.tar.gz/sha512
+index 6a64d44..6bbeb34 100644
+--- a/deps/checksums/Rmath-julia-0.1.tar.gz/sha512
++++ b/deps/checksums/Rmath-julia-0.1.tar.gz/sha512
+@@ -1 +1 @@
+-1dd94eca05bc06c3f33e8be5087d3b1742d01c8b38588e0fa79b8f6b9998760bca21bee1b65873825c4dde2d994a8271166bc21f670a34810fa9db598473a887
++15da0b3ff16113d5ad44c7ec42a1c8e260973883dd85ee174b3526f01137a94136cb03d4bbecb9267b7ca20d5ffc10670496d589cf60b86930f869a9fe219794
+diff --git a/doc/Makefile b/doc/Makefile
+index 08ba8dd..078d725 100644
+--- a/doc/Makefile
++++ b/doc/Makefile
+@@ -56,7 +56,7 @@ help:
+ 	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
+ 
+ clean:
+-	-rm -rf _build/*
++	@echo "Do not clean doc/_build/html. Just use it..."
+ 
+ cleanall: clean
+ 
+diff --git a/src/Makefile b/src/Makefile
+index 98fa704..b566791 100644
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -26,15 +26,8 @@ endif
+ 
+ # In LLVM < 3.4, --ldflags includes both options and libraries, so use it both before and after --libs
+ # In LLVM >= 3.4, --ldflags has only options, and --system-libs has the libraries.
+-LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --libs) $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --system-libs 2> /dev/null)
+-ifeq ($(USE_LLVM_SHLIB),1)
+-ifeq ($(LLVM_USE_CMAKE),1)
+-LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) -lLLVM
+-else
+-LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) -lLLVM-$(call exec,$(LLVM_CONFIG) --version)
+-endif
++LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --libs) $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --system-libs)
+ FLAGS += -DLLVM_SHLIB
+-endif
+ 
+ COMMON_LIBS = -L$(build_shlibdir) -L$(build_libdir) $(LIBUV) $(LIBUTF8PROC) $(NO_WHOLE_ARCHIVE) $(LLVMLINK) $(OSLIBS)
+ DEBUG_LIBS = $(WHOLE_ARCHIVE) $(BUILDDIR)/flisp/libflisp-debug.a $(WHOLE_ARCHIVE) $(BUILDDIR)/support/libsupport-debug.a $(COMMON_LIBS)
+diff --git a/ui/Makefile b/ui/Makefile
+index c9b5d0e..557a38c 100644
+--- a/ui/Makefile
++++ b/ui/Makefile
+@@ -20,15 +20,10 @@ OBJS = $(SRCS:%=%.o)
+ DOBJS = $(SRCS:%=%.dbg.obj)
+ DEBUGFLAGS += $(FLAGS)
+ SHIPFLAGS += $(FLAGS)
+-ifeq ($(USE_LLVM_SHLIB),1)
+-ifeq ($(LLVM_USE_CMAKE),1)
+-LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) -lLLVM
+-else
+-LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) -lLLVM-$(call exec,$(LLVM_CONFIG) --version)
+-endif
+-else
+-LLVMLINK =
+-endif
++
++LLVMLINK = $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --libs) $(call exec,$(LLVM_CONFIG) --ldflags) $(call exec,$(LLVM_CONFIG) --system-libs)
++FLAGS += -DLLVM_SHLIB
++
+ JLDFLAGS += $(LDFLAGS) $(NO_WHOLE_ARCHIVE) $(OSLIBS) $(LLVMLINK) $(RPATH)
+ 
+ ifeq ($(USE_SYSTEM_LIBM),0)