2016-10-28 01:50:47 UTC

21 files changed, 44 insertions, 44 deletions

diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r2 b/metadata/md5-cache/sci-biology/amos-3.1.0-r2
index 35b4b169867f..ca32e3863aee 100644
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r2
+++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r2
@@ -10,5 +10,5 @@ RDEPEND=qt4? ( dev-qt/qtcore:4 ) dev-perl/DBI dev-perl/Statistics-Descriptive sc
 SLOT=0
 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
 _eclass_exported_funcs=src_configure:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=7c03cf026ee8384c15d8a787be2d0c41
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0
index b36aee21018c..1d5dc0aff4d9 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.26.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz
 _eclass_exported_funcs=pkg_setup:python-any-r1 src_configure:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-any-r1	1c20f9b800324335a8e3b137363362e8	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-any-r1	1c20f9b800324335a8e3b137363362e8	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=3244c489c77e0c5ce691380f50256f1b
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.1.4 b/metadata/md5-cache/sci-biology/biopandas-0.1.4
index aefc39a6ec94..811eef9ef62d 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.1.4
+++ b/metadata/md5-cache/sci-biology/biopandas-0.1.4
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
 DESCRIPTION=Molecular Structures in Pandas DataFrames
 EAPI=5
 HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.python.org/pypi/BioPandas
-IUSE=test python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5
+IUSE=test python_targets_python2_7 python_targets_python3_4 python_targets_python3_5
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=BSD
-RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5 )
+RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 )
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.1.4.tar.gz
 _eclass_exported_funcs=src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=91683944bda72d8b5f7f71f9ee5f3217
diff --git a/metadata/md5-cache/sci-biology/biopython-1.65 b/metadata/md5-cache/sci-biology/biopython-1.65
index 4b77502083e7..00e94d0f5496 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.65
+++ b/metadata/md5-cache/sci-biology/biopython-1.65
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-)]
+DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-)]
 DESCRIPTION=Python modules for computational molecular biology
 EAPI=5
 HOMEPAGE=http://www.biopython.org/ https://pypi.python.org/pypi/biopython/
-IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4
+IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_4
 KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux
 LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-)]
-REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 )
+RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-)]
+REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 )
 SLOT=0
 SRC_URI=http://www.biopython.org/DIST/biopython-1.65.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=ed3332b0c893b27c66efacb74b25fabd
diff --git a/metadata/md5-cache/sci-biology/biopython-1.66 b/metadata/md5-cache/sci-biology/biopython-1.66
index bd7f160e044e..78b5a5e9ba2c 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.66
+++ b/metadata/md5-cache/sci-biology/biopython-1.66
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
 DESCRIPTION=Python modules for computational molecular biology
 EAPI=5
 HOMEPAGE=http://www.biopython.org/ https://pypi.python.org/pypi/biopython/
-IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5
+IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5
 KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
 LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
-REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5 )
+RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 )
 SLOT=0
 SRC_URI=http://www.biopython.org/DIST/biopython-1.66.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=3603e7d618d57e8df35f95bd62c52c56
diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68
index 7e27f7a4507f..be64aefaff75 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.68
+++ b/metadata/md5-cache/sci-biology/biopython-1.68
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
 DESCRIPTION=Python modules for computational molecular biology
 EAPI=6
 HOMEPAGE=http://www.biopython.org/ https://pypi.python.org/pypi/biopython/
-IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5
+IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5
 KEYWORDS=amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
 LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
-REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_python3_5 )
+RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( virtual/pypy:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)]
+REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 )
 SLOT=0
 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=bb88a51eff2869d32526c4523b716237
diff --git a/metadata/md5-cache/sci-biology/last-299 b/metadata/md5-cache/sci-biology/last-299
index 125993ceab7b..363283d48971 100644
--- a/metadata/md5-cache/sci-biology/last-299
+++ b/metadata/md5-cache/sci-biology/last-299
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=http://last.cbrc.jp/last-299.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=63fdd8e13d2df571e24d48edb9eb0ab9
diff --git a/metadata/md5-cache/sci-biology/pysam-0.9.0 b/metadata/md5-cache/sci-biology/pysam-0.9.0
index 38d6ab2f1553..92b21e476ad7 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.9.0
+++ b/metadata/md5-cache/sci-biology/pysam-0.9.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe
 SLOT=0
 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.9.0.tar.gz -> pysam-0.9.0.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:distutils-r1 src_compile:- src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1	674dae153419b2200ae54e879cc65b57	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=4347b0e64a8de2968bb9d80fc701d2ea
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
index 6d0ae71acac8..fa4db6f54b2e 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-0.1.19.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=386582eb3ff9435a92dd20bdbd248cbc
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
index 0ee5e36a56bc..7726bddf68e7 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
@@ -1,15 +1,15 @@
 DEFINED_PHASES=compile install postinst prepare setup
-DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig
+DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig
 DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
 EAPI=6
 HOMEPAGE=http://samtools.sourceforge.net/
 IUSE=examples python_targets_python2_7
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
 LICENSE=MIT
-RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl
+RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl
 REQUIRED_USE=python_targets_python2_7
 SLOT=0.1-legacy
 SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=1e7dbcbc9661826d1b34cbe736e9f360
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0 b/metadata/md5-cache/sci-biology/samtools-1.0
index 9f2386eaa094..b7bf3041bc6f 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0
+++ b/metadata/md5-cache/sci-biology/samtools-1.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=db99b61f10fd031a95c3ba948438e007
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0-r1 b/metadata/md5-cache/sci-biology/samtools-1.0-r1
index 47e873d17812..794363e6586a 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.0-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=cf94159379e0b14da650368a72d518dd
diff --git a/metadata/md5-cache/sci-biology/samtools-1.1 b/metadata/md5-cache/sci-biology/samtools-1.1
index 1ab21d9bff9f..b019655d1d2a 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.1
+++ b/metadata/md5-cache/sci-biology/samtools-1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.1.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=9233bca436af5041a19d8326e816d011
diff --git a/metadata/md5-cache/sci-biology/samtools-1.2 b/metadata/md5-cache/sci-biology/samtools-1.2
index 9d30b0fa44fb..df92b68e00ae 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.2
+++ b/metadata/md5-cache/sci-biology/samtools-1.2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.2.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=75d7314287663a3f5ea5b17060bd2081
diff --git a/metadata/md5-cache/sci-biology/samtools-1.3-r1 b/metadata/md5-cache/sci-biology/samtools-1.3-r1
index 36520a16a54b..7792c9789463 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.3-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.3-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.3.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=bf4d95b9d61aabecfc5d1eb4039ebc7d
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index 701deef7885f..863afdbc3072 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=sys-libs/zlib app-arch/bzip2 test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-2.8.12
+DEPEND=sys-libs/zlib app-arch/bzip2 test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-2.8.12
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ REQUIRED_USE=python_targets_python2_7 cpu_flags_x86_sse4_1
 SLOT=1.4
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils	f3d38665b0a86e08ba3a5473cdbfafd3	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
+_eclasses_=cmake-utils	f3d38665b0a86e08ba3a5473cdbfafd3	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
 _md5_=33a44ba69cb29b108cba8aebccd91632
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0 b/metadata/md5-cache/sci-biology/seqan-2.2.0
index 27fcac106b3b..844f6ef4e798 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=sys-libs/zlib app-arch/bzip2 doc? ( dev-python/sphinx[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-2.8.12
+DEPEND=sys-libs/zlib app-arch/bzip2 doc? ( dev-python/sphinx[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-2.8.12
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ REQUIRED_USE=python_targets_python2_7 cpu_flags_x86_sse4_1
 SLOT=2.2
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
 _eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:- src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils	f3d38665b0a86e08ba3a5473cdbfafd3	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
+_eclasses_=cmake-utils	f3d38665b0a86e08ba3a5473cdbfafd3	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
 _md5_=ea9c417443c0d2fb980a9595e26bbbb8
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3
index 56a1507a4ae8..f7c9fa5e90ed 100644
--- a/metadata/md5-cache/sci-biology/shrimp-2.2.3
+++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3
@@ -6,10 +6,10 @@ HOMEPAGE=http://compbio.cs.toronto.edu/shrimp/
 IUSE=custom-cflags +cpu_flags_x86_sse2 python_targets_python2_7
 KEYWORDS=~amd64 ~x86
 LICENSE=shrimp
-RDEPEND=!sci-mathematics/cado-nfs >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)]
+RDEPEND=!sci-mathematics/cado-nfs >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)]
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=4f8021ced803372cddeb27e1a3b6521c
diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
index 647d354c5d47..5a494a35c4af 100644
--- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
+++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
@@ -1,15 +1,15 @@
 DEFINED_PHASES=configure install postinst prepare setup
-DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
 EAPI=6
 HOMEPAGE=https://ccb.jhu.edu/software/tophat/
 IUSE=debug python_targets_python2_7
 KEYWORDS=~amd64 ~x86
 LICENSE=Artistic
-RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
+RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	b83a2420b796f7c6eff682679d08fe25	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
 _md5_=0182a9a0e1edc7fff427a466a0747e4e
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index ce9f543c90c5..282e7c6a3dd6 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	c584f9e0fe426f3dcc2c46c6f7cb95ce	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	c584f9e0fe426f3dcc2c46c6f7cb95ce	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=6d978aca9747776d0b4fb8d647081e1e
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index 1ca969d601ee..ccdf2781410c 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	c584f9e0fe426f3dcc2c46c6f7cb95ce	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	1797277ea0e7cee5c7de7ce74cf8acd8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	674dae153419b2200ae54e879cc65b57	eutils	b83a2420b796f7c6eff682679d08fe25	libtool	4890219c51da247200223277f993e054	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	e32940a7b2a9992ad217eccddb84d548	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	c584f9e0fe426f3dcc2c46c6f7cb95ce	python-r1	0f6937650a475d673baa5d0c8c0b37b3	python-utils-r1	d142329ab093dd20c1dd0edb5f094108	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
 _md5_=f3373f37e05509bac04eae39f236e5cc