2017-02-28 20:39:58 UTC

author: Repository QA checks <repo-qa-checks@gentoo.org> 2017-02-28 20:40:56 +0000
committer: Repository QA checks <repo-qa-checks@gentoo.org> 2017-02-28 20:40:56 +0000
commit: 6e147bef2a5027cb80c5e4f826a9ffb09f953be4 (patch)
tree: 6cf430b4c8562ceca272983abe5c6463436056d1 /metadata/md5-cache/sci-biology
parent: Merge updates from master (diff)
download: gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.tar.gz
gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.tar.bz2
gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.zip
215 files changed, 407 insertions, 407 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
index f57da1dd0e2f..743ced21d632 100644
--- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
+++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
@@ -10,5 +10,5 @@ RESTRICT=mirror
 SLOT=0
 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9632d8d4bd171156ad6edf821009dbc6
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bf78ab8abbdb34e4f7d5c8a0b4429c0f
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 1c8c473f8db3..ed76708206f9 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -10,5 +10,5 @@ RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
 _eclass_exported_funcs=pkg_prerm:webapp pkg_postinst:webapp pkg_setup:webapp src_unpack:perl-module src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	webapp	42c6ef7af496b228f9854b3c81e4b226
-_md5_=caf58a720664c095c77fe9b64b311dbe
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35	webapp	a76ebd3cb5649737496e8238992dd7ca
+_md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/aaindex-9.1-r1 b/metadata/md5-cache/sci-biology/aaindex-9.1-r1
index 1ba97ea3a8b2..290323213681 100644
--- a/metadata/md5-cache/sci-biology/aaindex-9.1-r1
+++ b/metadata/md5-cache/sci-biology/aaindex-9.1-r1
@@ -10,4 +10,4 @@ RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/aaindex-9.1.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=4d6b4148026d75cbe012cfa4d4375818
+_md5_=416040c81e5246e2fd1669dcb03c9a3d
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
index a2c3a0345373..6fcfdeeb9dca 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
@@ -10,5 +10,5 @@ RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virt
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz -> abyss-2.0.2.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=c56cccf3952d8a96466f965ccb2c1b56
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=3b173739bd4e2f9d61a49918b3b8bc05
diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
index 6f73e4b11516..e74eaa32df9e 100644
--- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2
+++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
@@ -9,5 +9,5 @@ RDEPEND=!sci-biology/allpaths !sci-biology/vaal
 SLOT=0
 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=5da6d578657883dd590b47d5bac03e65
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=89ad1ab9497c178e43302814589f5f26
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3
index 65d0c047133b..c6e00ac8e459 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r3
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r3
@@ -10,5 +10,5 @@ RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 )
 SLOT=0
 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
 _eclass_exported_funcs=pkg_preinst:java-pkg-opt-2 pkg_setup:java-pkg-opt-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-opt-2	40db73f27fc6458ec2105812a4f261c7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=869418aa15498fdffe085985f9243a4c
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-opt-2	be255db325e3af8fbf3506cf63998341	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=6bd792e8b76c06ee993b88f83e48b907
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r3 b/metadata/md5-cache/sci-biology/amos-3.1.0-r3
index fcad6b996080..b9d5fafb97bb 100644
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r3
+++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r3
@@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
 _eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=06ee98ea19966829e6af9c383fba91f2
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=df778f6981c64e06ab2354697c3fc4a6
diff --git a/metadata/md5-cache/sci-biology/arb-5.1-r1 b/metadata/md5-cache/sci-biology/arb-5.1-r1
index 67bf7138acfb..2ca12784e3af 100644
--- a/metadata/md5-cache/sci-biology/arb-5.1-r1
+++ b/metadata/md5-cache/sci-biology/arb-5.1-r1
@@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11
 SLOT=0
 SRC_URI=http://download.arb-home.de/release/arb_5.1/arbsrc.tgz -> arb-5.1.tgz mirror://gentoo/arb-5.1-glibc2.10.patch.bz2 https://dev.gentoo.org/~jlec/arb-5.1-linker.patch.bz2
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=322bbdaf7744475a2a71415aa9c95f5a
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=55cafcf3d37a81cfa2273ca02c35bb00
diff --git a/metadata/md5-cache/sci-biology/arb-5.2 b/metadata/md5-cache/sci-biology/arb-5.2
index 2feb6c6df7c5..cab8025d043a 100644
--- a/metadata/md5-cache/sci-biology/arb-5.2
+++ b/metadata/md5-cache/sci-biology/arb-5.2
@@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11
 SLOT=0
 SRC_URI=http://download.arb-home.de/release/arb_5.2/arbsrc.tgz -> arb-5.2.tgz https://dev.gentoo.org/~jlec/distfiles/arb-5.2-linker.patch.bz2
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=a5c086dafabd4a4f6621cf52efd4bf8e
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=f0ab0e2c5ca080655274968b7915db12
diff --git a/metadata/md5-cache/sci-biology/arb-5.3 b/metadata/md5-cache/sci-biology/arb-5.3
index 52e96e782818..06a950bca8ca 100644
--- a/metadata/md5-cache/sci-biology/arb-5.3
+++ b/metadata/md5-cache/sci-biology/arb-5.3
@@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11
 SLOT=0
 SRC_URI=http://download.arb-home.de/release/arb_5.3/arbsrc.tgz -> arb-5.3.tgz https://dev.gentoo.org/~jlec/distfiles/arb-5.3-linker.patch.xz
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=a6c177f14ee64902066247e84ce58942
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bf2908058bcd4bfbaa7c0eb481d7c999
diff --git a/metadata/md5-cache/sci-biology/ariadne-1.3-r3 b/metadata/md5-cache/sci-biology/ariadne-1.3-r3
index ab4f4b20a16f..8279d86acea4 100644
--- a/metadata/md5-cache/sci-biology/ariadne-1.3-r3
+++ b/metadata/md5-cache/sci-biology/ariadne-1.3-r3
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/ncbi-tools-0.20041020-r1
 SLOT=0
 SRC_URI=http://www.well.ox.ac.uk/ariadne/ariadne-1.3.tar.Z
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6d76b3ca143c655e1eb54fe6daf3cca6
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a99266aecef97d81f48df25aa43fbb4a
diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5
index 897db66561e7..5ba07f057fbd 100644
--- a/metadata/md5-cache/sci-biology/augustus-2.5.5
+++ b/metadata/md5-cache/sci-biology/augustus-2.5.5
@@ -8,5 +8,5 @@ LICENSE=Artistic
 SLOT=0
 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=d0f9ba272acefc27ec7b12c6d3b2b01d
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=5660f556708e8c3b5d43c9ef832e66ec
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.4.1 b/metadata/md5-cache/sci-biology/bamtools-2.4.1
index d84918022cc2..068d9b009627 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.4.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.4.1
@@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/jsoncpp-1.8.0 sys-libs/zlib
 SLOT=0
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.4.1.tar.gz -> bamtools-2.4.1.tar.gz
 _eclass_exported_funcs=src_prepare:cmake-utils src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=538c19cee95aa98acda57e02a64aa16d
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=d1565aa3d9a639f7316a0c8588ecfc41
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
index b20e3533b277..131df26dab0f 100644
--- a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
+++ b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-j
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/beast-mcmc-1.7.5.tar.xz
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=78a597e327e0b56f4074f590ef3eca4c
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=ff6d5ad394902a1137f7b3a310e2da17
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-9999 b/metadata/md5-cache/sci-biology/beast-mcmc-9999
index e7f0188fa23d..f69a1c7b75da 100644
--- a/metadata/md5-cache/sci-biology/beast-mcmc-9999
+++ b/metadata/md5-cache/sci-biology/beast-mcmc-9999
@@ -8,5 +8,5 @@ LICENSE=LGPL-3
 RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 _eclass_exported_funcs=pkg_preinst:subversion pkg_setup:java-pkg-2 src_unpack:subversion src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	subversion	352e2f8415dd2e3c297d2d2e32670deb	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=91fd25b95c1888b46de27b583565e9d0
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	subversion	a5d5826a85609611f098c0553eb24cc1	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=8ad11964919894b7a04467aea903b1c3
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0
index 2177317c8091..b4fdaf28b51d 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.26.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz
 _eclass_exported_funcs=pkg_setup:python-any-r1 src_configure:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	python-any-r1	1c20f9b800324335a8e3b137363362e8	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=42d15d14939e6481d16c75da1c73550e
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	python-any-r1	110f340b55387d928bb3f8ee3157d5da	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=76f5a1f39ff7b393994b8a22dc4a192f
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index b298c7e56a1a..66d016ce824f 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -10,5 +10,5 @@ RDEPEND=dev-perl/XML-Simple
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=78320f55e4a3ad5d498ceb56ecbc3171
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=abc362f15c5107d96bedfb879ea0375f
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index 85e191c3a220..a983ad44ed41 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2647d8e07c0c480cfc23743db14484db
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.1.4 b/metadata/md5-cache/sci-biology/biopandas-0.1.4
index d15e38e099fd..bca38f567b2e 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.1.4
+++ b/metadata/md5-cache/sci-biology/biopandas-0.1.4
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.1.4.tar.gz
 _eclass_exported_funcs=src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	ff7a6238714c20c6b0ba05d9956b5ad8	eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
-_md5_=e69dc9e12fffb1f0e54c73219f0753cb
+_eclasses_=distutils-r1	039ba10839816478cfb070fdeb053906	eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	xdg-utils	178a84136f416b8ea1a857717eacd21c
+_md5_=4bf8773b4c6c512c3e616bf999994904
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index c83838a25b47..c8338bb388f1 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -12,5 +12,5 @@ REQUIRED_USE=minimal? ( !graphviz )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=a3fea82483d3bcdeb956b1e4d6842382
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=be22a76392a6e5c121e4b6d388045faa
diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1
index 1dc68fd5b1e0..4947bffb8095 100644
--- a/metadata/md5-cache/sci-biology/bioperl-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1
@@ -9,5 +9,5 @@ PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-d
 RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)]
 SLOT=0
 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=68bced1b8c97790607fc2990bdd34bb4
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=2f5a1a5be901fb9aa471a5694313f16c
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index d9490adcb2f7..f5a94be363ed 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=c86ac1da0676ffecc4a6d1473143a1ea
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=1929bfeb08b2fcef94d459af1afdd442
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
index d224d9f2a573..510a51ebc30b 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
@@ -7,5 +7,5 @@ LICENSE=Artistic GPL-2
 RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)]
 SLOT=0
 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=0b002dfc84485c315f3a837fdf29a6ba
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=8f167dd7c94de9ed0f8fa3bb689ac020
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index 24fbb3ca0936..fa60dfe680a5 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=57636449f55fd44067e7024bcb3be832
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=cb366a6a0c6cf3c12320c2d6d3551abe
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
index e693672d3ded..177ed5f1a5e7 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
@@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2
 RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)]
 SLOT=0
 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=637485289bf69287c429734619a346eb
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=b2079f6491e945f3e9aed1677de8c755
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index d26652b0e35f..b347cab72659 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -11,5 +11,5 @@ RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=c1bba9bdabb2a73550f48e71b6747e2d
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
index eeaa532bbfd3..0a80cf9de979 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
@@ -9,5 +9,5 @@ RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/
 RESTRICT=test
 SLOT=0
 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=436c10e07faedaf943c1d785b850f8e0
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=f7b2d645e2b1e254f05dc0c7127e26df
diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68
index 7dd537d08eaf..dd9a1ba770b3 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.68
+++ b/metadata/md5-cache/sci-biology/biopython-1.68
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_py
 SLOT=0
 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	ff7a6238714c20c6b0ba05d9956b5ad8	eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
-_md5_=567b3f08e4df1c6c22840092ec59aa32
+_eclasses_=distutils-r1	039ba10839816478cfb070fdeb053906	eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	xdg-utils	178a84136f416b8ea1a857717eacd21c
+_md5_=0435edc9aefff4e2ffb912314f75430a
diff --git a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
index 6723327a6696..a2b7e8922712 100644
--- a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
+++ b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( ruby_targets_ruby21 )
 SLOT=0
 SRC_URI=http://www.bioruby.org/archive/bioruby-1.4.3.0001.tar.gz
 _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	ruby-fakegem	2b249022d4895a29827658b7d630c461	ruby-ng	70882a6b5354712e3ef87632e3d99f75	ruby-utils	382c3a262907e1219a21618dfd1a01a0	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=d8614d35c647d88074abb160e8e8f991
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	ruby-fakegem	a5577449fccd73f8b954b4c82776ab0e	ruby-ng	a5ac69cbaf175a7b4d86edc835b59565	ruby-utils	e9d0baddf239294b286da449ae7ac6a3	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=5c85b93179ee11b962ff0328399497f6
diff --git a/metadata/md5-cache/sci-biology/bioruby-9999 b/metadata/md5-cache/sci-biology/bioruby-9999
index 085d07b7f912..bd3ba3883997 100644
--- a/metadata/md5-cache/sci-biology/bioruby-9999
+++ b/metadata/md5-cache/sci-biology/bioruby-9999
@@ -9,5 +9,5 @@ RDEPEND=ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targe
 REQUIRED_USE=|| ( ruby_targets_ruby21 )
 SLOT=0
 _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	ruby-fakegem	2b249022d4895a29827658b7d630c461	ruby-ng	70882a6b5354712e3ef87632e3d99f75	ruby-utils	382c3a262907e1219a21618dfd1a01a0	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=503479eaed54d2d406b4773a81eb2364
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	ruby-fakegem	a5577449fccd73f8b954b4c82776ab0e	ruby-ng	a5ac69cbaf175a7b4d86edc835b59565	ruby-utils	e9d0baddf239294b286da449ae7ac6a3	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=62f85ead0efdc1239f23d00c9b8ec065
diff --git a/metadata/md5-cache/sci-biology/biosql-1.0.1 b/metadata/md5-cache/sci-biology/biosql-1.0.1
index b799ba667cad..cea9f86e3749 100644
--- a/metadata/md5-cache/sci-biology/biosql-1.0.1
+++ b/metadata/md5-cache/sci-biology/biosql-1.0.1
@@ -10,4 +10,4 @@ RDEPEND=mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg )
 SLOT=0
 SRC_URI=http://biosql.org/DIST/biosql-1.0.1.tar.bz2
 _eclass_exported_funcs=pkg_postinst:- src_install:-
-_md5_=81c48a17c4a95e2256f9e8408415fc81
+_md5_=35440dddd943c0cfe4724fb1a277140b
diff --git a/metadata/md5-cache/sci-biology/blat-34 b/metadata/md5-cache/sci-biology/blat-34
index f48baa0c7464..8e95d02a9c7e 100644
--- a/metadata/md5-cache/sci-biology/blat-34
+++ b/metadata/md5-cache/sci-biology/blat-34
@@ -8,5 +8,5 @@ LICENSE=blat
 SLOT=0
 SRC_URI=http://www.soe.ucsc.edu/~kent/src/blatSrc34.zip
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=54aad31b5a90dc0387ba6c87ba539ff1
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=646fc86fc1554d8096b18be577b79d63
diff --git a/metadata/md5-cache/sci-biology/blat-34-r1 b/metadata/md5-cache/sci-biology/blat-34-r1
index e91e0f5b7ec7..2d66d1e69883 100644
--- a/metadata/md5-cache/sci-biology/blat-34-r1
+++ b/metadata/md5-cache/sci-biology/blat-34-r1
@@ -8,5 +8,5 @@ LICENSE=blat
 SLOT=0
 SRC_URI=http://www.soe.ucsc.edu/~kent/src/blatSrc34.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2fb31e749261157d1329bfdeb6b73c6b
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=19fe48a8a2483db4aafd143899f14bd2
diff --git a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
index fb5034c12959..48b77734a55f 100644
--- a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
+++ b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
@@ -9,5 +9,5 @@ RDEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile
 SLOT=0
 SRC_URI=http://www.daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f88ecff2930bbcff09192dfeff84d4bf
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=2fe1853c7621b633d2ee794ef3176e3f
diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2 b/metadata/md5-cache/sci-biology/bowtie-1.1.2
index 56c07e6f795c..568d39e7be69 100644
--- a/metadata/md5-cache/sci-biology/bowtie-1.1.2
+++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2
@@ -9,5 +9,5 @@ LICENSE=Artistic
 SLOT=1
 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=bea647a3059e7392734895f8719da851
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d123eea345ef4aa6c2c174df53575eeb
diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1
index 039e881be286..f486a45d78eb 100644
--- a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1
+++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1
@@ -10,5 +10,5 @@ RDEPEND=tbb? ( dev-cpp/tbb )
 SLOT=1
 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3ffda47d0c02ed05ec45a657f7a10b19
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=069dc133bc01cabadeda1e327034b7a7
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.6 b/metadata/md5-cache/sci-biology/bowtie-2.2.6
index 9884d31ba1cb..6929feac76f4 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.2.6
+++ b/metadata/md5-cache/sci-biology/bowtie-2.2.6
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl
 SLOT=2
 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip
 _eclass_exported_funcs=pkg_pretend:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=5f8bf2d3f475b2c4c9d96b62096f7ab7
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=9a4ea0d94d151da708192284a1117dd7
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.9 b/metadata/md5-cache/sci-biology/bowtie-2.2.9
index a950dbe5b3cd..f70a70c8d98e 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.2.9
+++ b/metadata/md5-cache/sci-biology/bowtie-2.2.9
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl tbb? ( dev-cpp/tbb )
 SLOT=2
 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.9/bowtie2-2.2.9-source.zip
 _eclass_exported_funcs=pkg_pretend:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=fb9cf41d089bf386702847a0689055c4
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=46d87c867cd445707dc1913cf3dd7eb6
diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.12 b/metadata/md5-cache/sci-biology/bwa-0.7.12
index 4e42249c79c2..2353a26f5ccb 100644
--- a/metadata/md5-cache/sci-biology/bwa-0.7.12
+++ b/metadata/md5-cache/sci-biology/bwa-0.7.12
@@ -7,5 +7,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.12.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=af3f9687075d408df37b50449ec6b6d5
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=ae8e9d2f58c9bc5022e9e224c56d2e6d
diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.15 b/metadata/md5-cache/sci-biology/bwa-0.7.15
index 2d08add5399d..7a9cb2ece978 100644
--- a/metadata/md5-cache/sci-biology/bwa-0.7.15
+++ b/metadata/md5-cache/sci-biology/bwa-0.7.15
@@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.15.tar.bz2
 _eclass_exported_funcs=src_configure:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=4d3c46cb5a76a96e60903b8a63c97133
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1e7706ac5539187e6a18ffb1b2167e2c
diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
index 52b524ed6ec7..47000d8a9318 100644
--- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6
+++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6f2527a7e8185053ec2d19cad4038ed5
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bbe0ae10275a73485487e08f19f4ac1b
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.1
index 1b887d082c4d..97b7fbef9aba 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.1
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.1
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=4e27f76eeb748a11d818033236165609
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=31d235d5645f367b8eb15e10358c7475
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.3 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.3
index c50e2c1e8980..d82e74604327 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.3
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.3
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.3.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3fb162adb1f5e39f50f02b54632363df
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=2e8f46674a2f0906f57ffd70a5ebb549
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index f51f29b3d39b..f42c285a5807 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=65aafa1a14c2f399484db7c801eeffc0
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a497f56fb650c3a8ca539939429b6bfb
diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
index 6949dc4edcd5..ec27e3d071d4 100644
--- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4
+++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
@@ -7,5 +7,5 @@ LICENSE=clustalw
 SLOT=1
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=fbb6b48c328c0369b538f3d69687289b
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=5c8ba46cd87128b1ddae72e6ca3d07db
diff --git a/metadata/md5-cache/sci-biology/clustalw-2.1-r1 b/metadata/md5-cache/sci-biology/clustalw-2.1-r1
index d4948d2ab7e0..0cbcd8cd95f9 100644
--- a/metadata/md5-cache/sci-biology/clustalw-2.1-r1
+++ b/metadata/md5-cache/sci-biology/clustalw-2.1-r1
@@ -7,4 +7,4 @@ LICENSE=GPL-3 LGPL-3
 SLOT=2
 SRC_URI=http://www.clustal.org/download/current/clustalw-2.1.tar.gz
 _eclass_exported_funcs=src_install:-
-_md5_=05e746027b1f81e8ae56b17cd21dd5a9
+_md5_=397de2c00339f3a0b847f6daa9a481fb
diff --git a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1 b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1
index e943b204caa4..4366c9c38c27 100644
--- a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1
+++ b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r1
@@ -10,5 +10,5 @@ RDEPEND=virtual/mpi
 SLOT=0
 SRC_URI=http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/clustalw-mpi-0.13.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=eb223b777129d5549206f5147ac38017
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=7d76daaf811b7d99f2a8acd171010161
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r1 b/metadata/md5-cache/sci-biology/clustalx-2.1-r1
index 5d92ca912836..65f70aa5c803 100644
--- a/metadata/md5-cache/sci-biology/clustalx-2.1-r1
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r1
@@ -9,5 +9,5 @@ RDEPEND=dev-qt/qtcore:4 dev-qt/qtgui:4 >=sci-biology/clustalw-2.1
 SLOT=0
 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz
 _eclass_exported_funcs=src_unpack:qt4-r2 src_prepare:- src_configure:qt4-r2 src_compile:qt4-r2 src_install:-
-_eclasses_=base	3fe4f8980633fd7bc69e9887209ba2fe	eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	qmake-utils	0a242e7177789b0028b4045f336dd4db	qt4-r2	d6c113024bb3086a1facc65cd338930e	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=46a1492fe4bfbbe5e2adc7a94fe7d5a6
+_eclasses_=base	df2aa567b3f0595aae0d0923889f7631	eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	qmake-utils	ea78a9056543346cdc8cbbd07f16c6fb	qt4-r2	b7985a3197fbc3a22d059f19904e735b	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=8348b4854d048ec19d5706f2d0461a2c
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r2 b/metadata/md5-cache/sci-biology/clustalx-2.1-r2
index 0b2208fd8b74..eafde68525fe 100644
--- a/metadata/md5-cache/sci-biology/clustalx-2.1-r2
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r2
@@ -9,5 +9,5 @@ RDEPEND=dev-qt/qtcore:4 dev-qt/qtgui:4 >=sci-biology/clustalw-2.1
 SLOT=0
 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	qmake-utils	0a242e7177789b0028b4045f336dd4db	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2ed01ae098c05e4ecba28f93ded9b78b
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	qmake-utils	ea78a9056543346cdc8cbbd07f16c6fb	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=660b3463bc17c65cb8772961e042a81c
diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29
index 14f041d7d586..ac75d0542ddc 100644
--- a/metadata/md5-cache/sci-biology/consed-29
+++ b/metadata/md5-cache/sci-biology/consed-29
@@ -11,5 +11,5 @@ RESTRICT=fetch
 SLOT=0
 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=60e6b248f16b3a00f6592dfb59b125b4
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d533d3bc63ad3989cce879478db9de97
diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
index 6d01939d1b49..dcf45a022d2e 100644
--- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
+++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.59.0:= dev-cpp/eigen:
 SLOT=0
 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6b93e6dbae7355a08affefe4c39cf8dc
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4ad79d5b383bcb53a250a681604a4756
diff --git a/metadata/md5-cache/sci-biology/cutg-160-r1 b/metadata/md5-cache/sci-biology/cutg-160-r1
index 070e38f077a4..403ddf9ed72d 100644
--- a/metadata/md5-cache/sci-biology/cutg-160-r1
+++ b/metadata/md5-cache/sci-biology/cutg-160-r1
@@ -11,4 +11,4 @@ RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/cutg-160.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=84128d2fa1f9689d4b8519b665fa4a49
+_md5_=bbbd347ac6eafe2416778cd68a45bf1a
diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1
index 8754640db262..23b830669ca4 100644
--- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1
+++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1
@@ -7,5 +7,5 @@ LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=bebacda7b9082951500b83768cf250d1
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=aadd3cbbb875bbc0d53d08117691ad8e
diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1
index c5cb2d375021..2cc4a85b9209 100644
--- a/metadata/md5-cache/sci-biology/dialign2-2.2.1
+++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1
@@ -7,5 +7,5 @@ LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=ee98e826a5b57d9ea610cda6d19929da
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=97419777f320b8d18d7fe0c86a34d414
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index e80b19430e12..9683ab714f1e 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal
 SLOT=0
 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=16dfb2a9bc2909ed5a54439d11121ed9
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/elph-0.1.5 b/metadata/md5-cache/sci-biology/elph-0.1.5
index 7f31b5460639..91d2669039fc 100644
--- a/metadata/md5-cache/sci-biology/elph-0.1.5
+++ b/metadata/md5-cache/sci-biology/elph-0.1.5
@@ -7,5 +7,5 @@ LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-0.1.5.tar.gz
 _eclass_exported_funcs=src_unpack:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=fd17c47a2e8f2da8e6c3236a9e7dec89
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6a2abfb3f5ff27e107f888032b64a8d8
diff --git a/metadata/md5-cache/sci-biology/elph-1.0.1 b/metadata/md5-cache/sci-biology/elph-1.0.1
index ca2406379480..3682d618834f 100644
--- a/metadata/md5-cache/sci-biology/elph-1.0.1
+++ b/metadata/md5-cache/sci-biology/elph-1.0.1
@@ -7,5 +7,5 @@ LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-1.0.1.tar.gz
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=57736c0fadfb9a7f58d7b479b2ccecc6
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a51a227ff715c67e94b23adff46499ba
diff --git a/metadata/md5-cache/sci-biology/embassy-6.6.0-r1 b/metadata/md5-cache/sci-biology/embassy-6.6.0-r1
index c833c07be1f8..8d9a41c5462d 100644
--- a/metadata/md5-cache/sci-biology/embassy-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/embassy-6.6.0-r1
@@ -7,4 +7,4 @@ LICENSE=freedist
 RDEPEND=>=sci-biology/embassy-cbstools-1.0.0.660 >=sci-biology/embassy-clustalomega-1.1.0.660 >=sci-biology/embassy-domainatrix-0.1.660 >=sci-biology/embassy-domalign-0.1.660 >=sci-biology/embassy-domsearch-0.1.660 >=sci-biology/embassy-emnu-1.05.660 >=sci-biology/embassy-esim4-1.0.0.660 >=sci-biology/embassy-hmmer-2.3.2.660 >=sci-biology/embassy-iprscan-4.3.1.660 >=sci-biology/embassy-meme-4.7.660 >=sci-biology/embassy-mse-3.0.0.660 >=sci-biology/embassy-phylipnew-3.69.660 >=sci-biology/embassy-signature-0.1.660 >=sci-biology/embassy-structure-0.1.660 >=sci-biology/embassy-topo-2.0.660 >=sci-biology/embassy-vienna-1.7.2.660
 SLOT=0
 _eclass_exported_funcs=-
-_md5_=9e5ef3ddd5099588fa8f7f28ff3766c7
+_md5_=40fa8435e29624ec5b0c9ffaf2b8c695
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
index 0049131b1c7b..84008fdc8f81 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=36633f4f8ab0d60b36da3d315ae909cc
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4166ba28131fdf70907b31300aa4c08b
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
index f8e38a0e4e22..f980bf13f9b7 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plp
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f38b5f9c96ef73ba01db2fbbae6d177b
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=ef491b452e56be12961f62b16961f4f1
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
index 6a2d3793148a..6d12407e8ebd 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=32111e984a719a10d3e7ed02155e7746
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
index 579d3bcad309..fa594487ba37 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6b4dd2cb816edd68b4bc0cc3295adbb8
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=9f8b2caa273f4ae3b0463e6de6782660
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
index 1756c2bdab16..734e5f812591 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=be27623fa61335b99baf1368628d6bf6
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=920906439fbc5278460201b23a615736
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
index d5f7d527aced..da74e9918bb3 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
@@ -10,5 +10,5 @@ RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-l
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=4a4c24950bc40943fb4deb00b778cc67
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d82c7c44ec76fa5d6165769a73e5df9a
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
index fc95dee7a5d1..e8069c53e620 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=89212a7e697e35769d86ed2b9165ae8a
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1b156bed7ea031aeb5464836dd987f18
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
index 15ab2740df0b..ce3542747386 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:=
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=22af0c66370a3c954777cdb3db83526b
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=83d02ae22d4e1864669639d9289cd112
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
index bacdf5022bbf..3fa9a6e82993 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=42b8956126555da13b30e7b99a6d1c27
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=73b0c29964ea3506d18ef6b6c8df70e1
diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
index 0e13a94a4608..48a05e7dd4dc 100644
--- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
+++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=dfd1ab0cc180fde4f1a6a8cee61da32c
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=b18db6d7a2159272c7b69d34a14dc9b5
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
index 713964cd9563..7eb6ccaee2ea 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
@@ -10,5 +10,5 @@ RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-l
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=8b0994857bf3f5ddbbfb0d8e082f5e79
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=84df94b7c4b0f044de45cef524cbf453
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
index e40e08ea75e0..ca6e853e5ced 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=17e27706811694598dd86c2cc2700b88
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=00620d36fbf4790dc2ecfb240ba9816c
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
index 3172d70fb9a9..1ce7a77b6a3d 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=a3d2107d481622edb12b1ea107a339db
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4cb685046b5a39b624eb3467b815c2c4
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
index d2bbb9ac9376..eb6d0678a480 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=14b0abfe0fcd646ba872e0ed667daa11
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=634d624be78f958ed7fca02e7dc43bd4
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
index 2d377488e743..96968d2efd66 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9c114b14a376fe798b7090c303d92e67
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=e50220ee11093554b589c1f9f53e7c09
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
index ed4920913693..00c41fe43079 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql?
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
 _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:emboss-r2
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=b393f27d72b82ff8bda5e96ecc1b7a28
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d257de40bcdb33c0735daac8a5f15fda
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index 01f17775de50..075272de8e71 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -11,5 +11,5 @@ RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:emboss-r2 src_configure:emboss-r2 src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	readme.gentoo-r1	03878c06495db70bc36bd717383c09f7	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=b205936253bcef630e5a55a75ea3c484
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	emboss-r2	e6c8236c06e1e543b4feef45c31dd618	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	readme.gentoo-r1	6f03e110529650f57fc7d1fb908b8986	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=99a47266a2a8f2fd0a874111491146e2
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1 b/metadata/md5-cache/sci-biology/eugene-4.1
index ed4112d5f500..e04e4dc54e18 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1
+++ b/metadata/md5-cache/sci-biology/eugene-4.1
@@ -10,5 +10,5 @@ RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1157/eugene-4.1.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f64907e857ca8ed5db03a3315cc74e33
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6f1638a54685839c739157c9f641b358
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index eb8f287768eb..9ce4443435fb 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -10,5 +10,5 @@ RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=ff59eaa4f9ea8406f660078a5acb8f67
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=8f5a68a22051f24d76cd43774022915b
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index e7d84ba37317..bc303abd0b20 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -11,5 +11,5 @@ REQUIRED_USE=test? ( utils )
 SLOT=0
 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=cdf8e44122e18a8298a55be023ae333c
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=2efd53d13e6f08e4144477038f41e4af
diff --git a/metadata/md5-cache/sci-biology/express-0.9.5-r1 b/metadata/md5-cache/sci-biology/express-0.9.5-r1
index dc84b7ea86b7..ef4ab807bbde 100644
--- a/metadata/md5-cache/sci-biology/express-0.9.5-r1
+++ b/metadata/md5-cache/sci-biology/express-0.9.5-r1
@@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-0.9.5/express-0.9.5-src.tgz
 _eclass_exported_funcs=src_prepare:- src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=3bc7636082b31abb4ab2b71a0a941a81
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=6d15a446bfc7659cceaabe3567001583
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index e059683517ab..fb9fd1d87a45 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sy
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
 _eclass_exported_funcs=src_prepare:cmake-utils src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=c2f687191454c4316a3ee0917423a42f
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=b71cdea630f32e2657b8152579eec606
diff --git a/metadata/md5-cache/sci-biology/fasta-35.4.10 b/metadata/md5-cache/sci-biology/fasta-35.4.10
index d7461a3f9f01..2c7e5b68c0f4 100644
--- a/metadata/md5-cache/sci-biology/fasta-35.4.10
+++ b/metadata/md5-cache/sci-biology/fasta-35.4.10
@@ -9,5 +9,5 @@ LICENSE=fasta
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta3/fasta-35.4.10.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=45693968b9680c3c6bfd9a05d54dc62a
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bc70246741c824a5b11b9e292d26c372
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index ad3593b80918..d81f8345b1e7 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -9,5 +9,5 @@ LICENSE=fasta
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3f2fe79adf516da76e4ecbb185cad0bc
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=7b46f81d2659e9120c49874e774b5ca0
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.7 b/metadata/md5-cache/sci-biology/fasttree-2.1.7
index 3bb979ee3f97..a7898f9c15cc 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.7
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.7
@@ -10,5 +10,5 @@ REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.7.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.7.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.7.tar.gz
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=61aa89b01dafa750683148d15dde6e52
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=20d72299931c8f8e092006a9b668182c
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8
index 659d269a10ba..5ed4be4b8969 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.8
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8
@@ -10,5 +10,5 @@ REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=a57c162d671d45c02f889b16b5bdb38e
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=f2b648d93a4c0ca58285574958cde15a
diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r2 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r2
index 46f84c78f329..fcdb97acc53e 100644
--- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r2
+++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r2
@@ -7,4 +7,4 @@ LICENSE=finchtv
 SLOT=0
 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz
 _eclass_exported_funcs=src_install:-
-_md5_=316fe22af17aef54b898e9b8620e47e1
+_md5_=ae49772a5dce24695f0ae65993bae0c1
diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
index 7fb04efd9c20..5470755c7da9 100644
--- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
+++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
@@ -7,5 +7,5 @@ LICENSE=finchtv
 SLOT=0
 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz
 _eclass_exported_funcs=src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3167a2e409d79daf555635808a99c86b
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=08355830f28d1052c2ab527b82a8dd68
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2 b/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2
index e3a7947d76a2..3205bbe30865 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2
@@ -9,5 +9,5 @@ RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.3/fahclient_7.3.6-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.3/fahclient_7.3.6-64bit-release.tar.bz2 )
 _eclass_exported_funcs=pkg_preinst:- pkg_postrm:- pkg_postinst:- pkg_setup:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	user	e10ccb95af96d45f86016fa982a949bb	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=3c0aaea43823b5adf947c6a0e5090ec3
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	user	e4b567c44272a719fabf53f0f885d3f7	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=83224cd2d1ccfa8deb2e4fdbfd05ef7e
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4 b/metadata/md5-cache/sci-biology/foldingathome-7.4.4
index 24d03c372042..cd069ff3af9a 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.4.4
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.4.4
@@ -9,5 +9,5 @@ RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 )
 _eclass_exported_funcs=pkg_preinst:- pkg_postrm:- pkg_postinst:- pkg_setup:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	user	e10ccb95af96d45f86016fa982a949bb	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=9242ae0fc742c83a08f28417712e5fe3
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	user	e4b567c44272a719fabf53f0f885d3f7	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=58a4ef0b080ef67a97fe1c182f21f2c1
diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4
index 1fe487d90ed0..43d125f859d2 100644
--- a/metadata/md5-cache/sci-biology/gatk-2.4
+++ b/metadata/md5-cache/sci-biology/gatk-2.4
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:vcs-snapshot src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	vcs-snapshot	2b65ecb2d0f91e4322c2ac8d673993bd	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=6e7edd964ee7eedfb9d0941dd49b840e
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	vcs-snapshot	03289f51c769cf409d200d2d628cdd6e	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=8afea474ed6c1f4ad5ac6d6a18c49542
diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999
index f62fe6c2ef6f..6a5b9d60fb5d 100644
--- a/metadata/md5-cache/sci-biology/gatk-9999
+++ b/metadata/md5-cache/sci-biology/gatk-9999
@@ -8,5 +8,5 @@ LICENSE=MIT
 RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:git-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	git-2	7af5d170bfc02983b4bcd3167dc5edd4	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=87fbeadb7427c25b13f5837263f8939f
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	git-2	195a672bfaf52d868442171c9469bbb6	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=df4fa840e567320d0f100f0073200f23
diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1
index 9531f0391d67..017c238710e7 100644
--- a/metadata/md5-cache/sci-biology/gibbs-3.1
+++ b/metadata/md5-cache/sci-biology/gibbs-3.1
@@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 SLOT=0
 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3330594e03e29a02e3796906b02101a9
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=e28918ff8ca46c8b8254e4e36f8d0bcf
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
index 31147dfcc88d..f1205317b73d 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
@@ -8,5 +8,5 @@ RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=e88e62a74099bfe5158b5dcc02b5b282
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=fda3f095f34da47d12e170b3c40dfd67
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b
index 14e1da709f7e..948b49d5f792 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02b
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02b
@@ -8,5 +8,5 @@ RDEPEND=app-shells/tcsh sci-biology/elph
 SLOT=0
 SRC_URI=http://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=0548d7bfa5d5a7de4e2265a7038e3c0b
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1a77df881e0fba38094c344e97b529a5
diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
index d0c2dc656d08..c0a7107541a6 100644
--- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
+++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
@@ -7,5 +7,5 @@ LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz
 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=b42c827c4d6dc5e11c3d97315cf87522
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=addae30e588a0c7a05baea53d553af0f
diff --git a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5
index 884e63800b3b..34de3501104a 100644
--- a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5
+++ b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5
@@ -7,5 +7,5 @@ LICENSE=gmap
 SLOT=0
 SRC_URI=http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-12-31.v5.tar.gz
 _eclass_exported_funcs=-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=cb95c1947d1ab705cdf541bd023bbab0
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=398e7f0670f5bd07e45f2780d7fe03cf
diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
index 219f2ec44f47..1a62c6083f46 100644
--- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
+++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=9219a99b4f7b7c8512cccd71e06d15fc
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=03afdad422e8ac673016b7bbfd574c75
diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
index a9f06f9f9af4..ff02117eb7ec 100644
--- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
+++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=57855a2736a8db9f1db955ee8eff9f68
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=5d560004d41472d184dd71e7ea06a04c
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
index fcf6ae68c47d..2a854405cce8 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
+++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
@@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-cpp.zip
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6524b71bf3ee0d73c02c9301388b3806
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=62b1fc794a90a87e0f80ab795108ee3c
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
index d79050db38bd..3ba2fd1fd77c 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
+++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
@@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-cpp.zip
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=dd885c4ec853b595e8d09da5e5237c55
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=2599766d541e65f4acfb94c4fa4e974e
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
index 2d0a7b0ee194..9b7e5f874dc9 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
+++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
@@ -10,5 +10,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip
 _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=3119d3d694fd7478ab452660b5ae4d25
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=416e64f4b9f8268c7d795c45e35bacf7
diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3
index d781b651f258..c3f303434308 100644
--- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3
+++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r3
@@ -8,4 +8,4 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/hmmer-2.3.2.tar.gz
 _eclass_exported_funcs=src_configure:- src_test:- src_install:-
-_md5_=7c6b2b50ba2e91949f9996600304b619
+_md5_=25c6769a50e8be3ac0fd03b8727c7a0c
diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
index 5e9709748d24..2435b8bcf810 100644
--- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
+++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r4
@@ -9,4 +9,4 @@ LICENSE=GPL-2
 SLOT=2
 SRC_URI=http://eddylab.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_configure:- src_install:-
-_md5_=265d14031d24a7ce3769de795c83202f
+_md5_=2f631b79914f25875fd00c05fd144807
diff --git a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2 b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
index 4d24c06a0f41..857dc91adf58 100644
--- a/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
+++ b/metadata/md5-cache/sci-biology/hmmer-3.1_beta2
@@ -10,4 +10,4 @@ RDEPEND=mpi? ( virtual/mpi ) gsl? ( sci-libs/gsl:= )
 SLOT=0
 SRC_URI=http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz
 _eclass_exported_funcs=src_configure:- src_install:-
-_md5_=af59ab5382afe28f1bb3af997ed62311
+_md5_=e1fda24a135e4e71cdf6ae399f38faea
diff --git a/metadata/md5-cache/sci-biology/iedera-1.04 b/metadata/md5-cache/sci-biology/iedera-1.04
index 42a6cfb66d5e..70fcef857623 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.04
+++ b/metadata/md5-cache/sci-biology/iedera-1.04
@@ -7,4 +7,4 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.04.tar.gz
 _eclass_exported_funcs=src_install:-
-_md5_=42417fbcf3312ce2e8bccbcb98b86e64
+_md5_=85c923889cd2b60188eea7dfbc90f7d1
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index 1d8a442b2d01..ae3209220e62 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=d1b6a914aed303aeffb28f45b2c79809
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
index 8544bff824f1..910baa036ab0 100644
--- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
+++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
@@ -10,4 +10,4 @@ RDEPEND=mpi? ( virtual/mpi )
 SLOT=0
 SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz
 _eclass_exported_funcs=src_configure:- src_install:-
-_md5_=293913c1218949baab67c01d3afdaf44
+_md5_=a3cee86cfd4ecbef4e39563bc652a64b
diff --git a/metadata/md5-cache/sci-biology/iqpnni-3.3.1 b/metadata/md5-cache/sci-biology/iqpnni-3.3.1
index 0cea8a092a24..7c66919172c0 100644
--- a/metadata/md5-cache/sci-biology/iqpnni-3.3.1
+++ b/metadata/md5-cache/sci-biology/iqpnni-3.3.1
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.cibiv.at/software/iqpnni/iqpnni-3.3.1.tar.gz
 _eclass_exported_funcs=src_unpack:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=dc248238a134cf774f639816f37ba711
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=8dc3dddcc6106920cadfdcfd77a0d72b
diff --git a/metadata/md5-cache/sci-biology/iqpnni-3.3.2-r1 b/metadata/md5-cache/sci-biology/iqpnni-3.3.2-r1
index 8a5637d84498..b80085eb7476 100644
--- a/metadata/md5-cache/sci-biology/iqpnni-3.3.2-r1
+++ b/metadata/md5-cache/sci-biology/iqpnni-3.3.2-r1
@@ -8,4 +8,4 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.cibiv.at/software/iqpnni/iqpnni-3.3.2.tar.gz
 _eclass_exported_funcs=src_install:-
-_md5_=d73fec68f47bba52885795fa6a81e70a
+_md5_=871193b79341fc00590227fc8ec7d4d4
diff --git a/metadata/md5-cache/sci-biology/kalign-2.03-r2 b/metadata/md5-cache/sci-biology/kalign-2.03-r2
index d7eae2e209e6..0442c2c597f8 100644
--- a/metadata/md5-cache/sci-biology/kalign-2.03-r2
+++ b/metadata/md5-cache/sci-biology/kalign-2.03-r2
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://debian/pool/main/k/kalign/kalign_2.03.orig.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=35e6048c020c17f19a1b80bf9ac67da3
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=175d26382226c7bed2b44be485b01d01
diff --git a/metadata/md5-cache/sci-biology/lagan-2.0-r3 b/metadata/md5-cache/sci-biology/lagan-2.0-r3
index 481efd5e9687..5aad6882b975 100644
--- a/metadata/md5-cache/sci-biology/lagan-2.0-r3
+++ b/metadata/md5-cache/sci-biology/lagan-2.0-r3
@@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=http://lagan.stanford.edu/lagan_web/lagan20.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=51daaf7838935dd5692d512982586687
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=c9dbddd6a22f2e20ff25d0aa1e6f4280
diff --git a/metadata/md5-cache/sci-biology/last-230 b/metadata/md5-cache/sci-biology/last-230
index 1c3bab99c513..fe0487f87df2 100644
--- a/metadata/md5-cache/sci-biology/last-230
+++ b/metadata/md5-cache/sci-biology/last-230
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=http://last.cbrc.jp/archive/last-230.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6aa3748656a0bb109728381325810807
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=5da658e6779591b0d1b9ad3413a0e7b2
diff --git a/metadata/md5-cache/sci-biology/last-299 b/metadata/md5-cache/sci-biology/last-299
index 48fbc33c7abe..6d4887905a57 100644
--- a/metadata/md5-cache/sci-biology/last-299
+++ b/metadata/md5-cache/sci-biology/last-299
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=http://last.cbrc.jp/last-299.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=63fdd8e13d2df571e24d48edb9eb0ab9
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6e1f0bdb917742bc0699b6a60a326081
diff --git a/metadata/md5-cache/sci-biology/mafft-7.050 b/metadata/md5-cache/sci-biology/mafft-7.050
index 871bf26a0966..194f24c924e2 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.050
+++ b/metadata/md5-cache/sci-biology/mafft-7.050
@@ -8,5 +8,5 @@ LICENSE=BSD
 SLOT=0
 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=801f7688176caf432098521680ab98e4
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=10435da51da43a9bd92e9e337fb92445
diff --git a/metadata/md5-cache/sci-biology/mafft-7.215 b/metadata/md5-cache/sci-biology/mafft-7.215
index 789445470f63..54ae17553ae0 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.215
+++ b/metadata/md5-cache/sci-biology/mafft-7.215
@@ -8,5 +8,5 @@ LICENSE=BSD
 SLOT=0
 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=a5ad6198a26e60e10813e00447962396
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=26a81f4b6b0ff69fbc3eba8869681491
diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305
index 9ed1c22e545e..c97a760aaafe 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.305
+++ b/metadata/md5-cache/sci-biology/mafft-7.305
@@ -8,5 +8,5 @@ LICENSE=BSD
 SLOT=0
 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=7d10b9495f44d9cbd76380a89ff731db
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4701ed0cbf5fff28c6de7c8b01e134af
diff --git a/metadata/md5-cache/sci-biology/mammoth-1.0-r1 b/metadata/md5-cache/sci-biology/mammoth-1.0-r1
index 892ca40db35f..39d0bfe69dcd 100644
--- a/metadata/md5-cache/sci-biology/mammoth-1.0-r1
+++ b/metadata/md5-cache/sci-biology/mammoth-1.0-r1
@@ -10,5 +10,5 @@ RESTRICT=fetch
 SLOT=0
 SRC_URI=mammoth-1.0-src.tgz
 _eclass_exported_funcs=pkg_setup:fortran-2 src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	fortran-2	8200fc942c3b3c1fc75d4d5bfd0ba7a2	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=ec1885f686d8996fc43bc556a7e9f720
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	fortran-2	9773a6296d565bc8cf241891112a9705	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d772b19e1240a53cc095d4d938da012d
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index ebeb491f40ac..3bd02e87ed89 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -9,5 +9,5 @@ RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=d3e0e2e43a577a0a8e0ad04241b90bc2
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index 3452586e1788..6b8089fa4cba 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -9,5 +9,5 @@ RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=256ef3644c427c65d344620e8533c95c
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312
index 6af4fa398e4b..3d5904f25be7 100644
--- a/metadata/md5-cache/sci-biology/mcl-08.312
+++ b/metadata/md5-cache/sci-biology/mcl-08.312
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=86f20cc60ef5d1547df487e8647393c1
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=24cf3aad7375304f2721048d2f76b5f1
diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135
index ce0bec70fcbc..4dd502225579 100644
--- a/metadata/md5-cache/sci-biology/mcl-12.135
+++ b/metadata/md5-cache/sci-biology/mcl-12.135
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=86f20cc60ef5d1547df487e8647393c1
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=24cf3aad7375304f2721048d2f76b5f1
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index d6ce2b06845a..952b38e4ba36 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=ddf4fd48049964197b24a486c98503f4
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=3429c68609b6c70e047d577379f68f97
diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
index 22ad1bb08cfa..c33a4d230484 100644
--- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2
+++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
@@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz
 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	perl-functions	aac50de73be0a80ebe780e0b20850130	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=5e345a0f6a1367eb7ce491ec8194987a
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	perl-functions	ca1237f4863eb3e83ab1462927f981c2	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=a4080439675628436c06de8db9f59c6e
diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2
index 317cbb20dd8b..ba0d92fb717d 100644
--- a/metadata/md5-cache/sci-biology/mira-4.0.2
+++ b/metadata/md5-cache/sci-biology/mira-4.0.2
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/boost[threads] dev-util/google-perftools
 SLOT=0
 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=51d6a19a38694f33874d49eaf0c033bc
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4e9fc8a550640febbc0b71544c16618c
diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30
index d3b003043350..8138ca9cb740 100644
--- a/metadata/md5-cache/sci-biology/mosaik-2.2.30
+++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz
 _eclass_exported_funcs=src_unpack:vcs-snapshot src_configure:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	vcs-snapshot	2b65ecb2d0f91e4322c2ac8d673993bd
-_md5_=0793e91c3f33532174681aade8e56eff
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	vcs-snapshot	03289f51c769cf409d200d2d628cdd6e
+_md5_=e8bd620c581af022566733e65d479626
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index a86f4257f33e..9953252f7f4c 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 SLOT=0
 SRC_URI=http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	fortran-2	8200fc942c3b3c1fc75d4d5bfd0ba7a2	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=b42407a0fafab0d97c3f25952ab2fdf8
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	fortran-2	9773a6296d565bc8cf241891112a9705	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=abcc03749068210ba5c44ba0b4a85e27
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1
index 79406d159031..da52c70cc83e 100644
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1
+++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 )
 SLOT=0
 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=cbcfd648e8584c43dc080e4afca5f038
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a082c9b1f1b5f9fa9b85e23eb7009a6d
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
index 07203e4c98c2..805901454b2b 100644
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
+++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0
 SLOT=0
 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=10613055652e0833992483376dd596e8
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a944448f568e57bb9f221cd1f437ab09
diff --git a/metadata/md5-cache/sci-biology/mummer-3.20 b/metadata/md5-cache/sci-biology/mummer-3.20
index 15fdc9c36c5f..fb7627d7b915 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.20
+++ b/metadata/md5-cache/sci-biology/mummer-3.20
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.20.tar.gz
 _eclass_exported_funcs=src_unpack:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=34bc41bb6f0e306a25a82485615b429d
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=38192edeb9ca45ceaeb1c6250f5fec71
diff --git a/metadata/md5-cache/sci-biology/mummer-3.21 b/metadata/md5-cache/sci-biology/mummer-3.21
index 48cedb7db3ed..890ee490e548 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.21
+++ b/metadata/md5-cache/sci-biology/mummer-3.21
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.21.tar.gz
 _eclass_exported_funcs=src_unpack:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f7c3a4036f4bc40e941f2e0507d5e094
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6c602bd6821ed77f7a010acd7895c18c
diff --git a/metadata/md5-cache/sci-biology/mummer-3.22-r1 b/metadata/md5-cache/sci-biology/mummer-3.22-r1
index 3f289715689a..4800bdec82e7 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.22-r1
+++ b/metadata/md5-cache/sci-biology/mummer-3.22-r1
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.22.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=442826d5952762aeb80a630690097f2d
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6d9be1ee53f6bb6deb0202fada6999a2
diff --git a/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha b/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
index cb26fe002eb2..9f1f1f1f8f3c 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
+++ b/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 python_targets_python3_4 py
 SLOT=0
 SRC_URI=https://github.com/gmarcais/mummer/releases/download/v3.9.4alpha/mummer-3.9.4alpha.tar.gz -> mummer-3.9.4_alpha.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_configure:- src_compile:- src_install:-
-_eclasses_=multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	perl-functions	aac50de73be0a80ebe780e0b20850130	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f9f59e9f624628103b59f154925fd5fd
+_eclasses_=multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	perl-functions	ca1237f4863eb3e83ab1462927f981c2	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1021dfacf139668534c629fd9a948d69
diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31
index 1d2e57b83c27..d9a80300f4a6 100644
--- a/metadata/md5-cache/sci-biology/muscle-3.8.31
+++ b/metadata/md5-cache/sci-biology/muscle-3.8.31
@@ -8,5 +8,5 @@ RDEPEND=!sci-libs/libmuscle
 SLOT=0
 SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=66098426576b0d39431bfb0549bbeafd
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=500ff424aff8c56744362bc87a3ff285
diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
index 40ff707aadf0..593f2d517253 100644
--- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
+++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
@@ -10,5 +10,5 @@ RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontc
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz
 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	prefix	99dcca42e6528d8fe3c214bf5731aaf2	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=07fb3890d02f03a28198e7dbc142511c
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	prefix	df8265631f8bf5f5df387e9b987121f9	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=770169ddfbcde7c5fbe57bff9b10ca14
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6 b/metadata/md5-cache/sci-biology/newick-utils-1.6
index 1a24cc167420..de1e07853c56 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6
@@ -8,4 +8,4 @@ RDEPEND=!dev-games/libnw
 SLOT=0
 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
 _eclass_exported_funcs=src_test:-
-_md5_=c166f12c7d2afbfc81ed73a39ea35a1b
+_md5_=f70356a582d317400bf4cd17b73beb16
diff --git a/metadata/md5-cache/sci-biology/njplot-2.3-r2 b/metadata/md5-cache/sci-biology/njplot-2.3-r2
index c5a6235ef82a..ce4c08fcde47 100644
--- a/metadata/md5-cache/sci-biology/njplot-2.3-r2
+++ b/metadata/md5-cache/sci-biology/njplot-2.3-r2
@@ -9,5 +9,5 @@ RDEPEND=sci-biology/ncbi-tools[X,static-libs] x11-libs/libXmu
 SLOT=0
 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/njplot-2.3.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=eea00dfc6cb2f93c9509e7e51fccbe15
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=c70b49c7f5e1a92f5169df372f9638c6
diff --git a/metadata/md5-cache/sci-biology/pals-1.0 b/metadata/md5-cache/sci-biology/pals-1.0
index 74ab32d60c4e..ec8d89bffc38 100644
--- a/metadata/md5-cache/sci-biology/pals-1.0
+++ b/metadata/md5-cache/sci-biology/pals-1.0
@@ -7,5 +7,5 @@ LICENSE=public-domain
 SLOT=0
 SRC_URI=mirror://gentoo/pals-1.0.tar.gz
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=e0ef21df5e1b1a15fd4532b3a9d6e6b7
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=5f3e4550eddfbc5e4d66b7af5beb80c7
diff --git a/metadata/md5-cache/sci-biology/paml-4.4c-r1 b/metadata/md5-cache/sci-biology/paml-4.4c-r1
index a725666d2f3e..aaad28cf9f5f 100644
--- a/metadata/md5-cache/sci-biology/paml-4.4c-r1
+++ b/metadata/md5-cache/sci-biology/paml-4.4c-r1
@@ -7,5 +7,5 @@ LICENSE=free-noncomm
 SLOT=0
 SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=a2299253a4624fe8430541631d399349
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=c46d709378282d4ccbb567aaa00ee01a
diff --git a/metadata/md5-cache/sci-biology/phrap-1.080812-r2 b/metadata/md5-cache/sci-biology/phrap-1.080812-r2
index d3a2891b208d..b4a314dd5e84 100644
--- a/metadata/md5-cache/sci-biology/phrap-1.080812-r2
+++ b/metadata/md5-cache/sci-biology/phrap-1.080812-r2
@@ -9,5 +9,5 @@ RESTRICT=fetch
 SLOT=0
 SRC_URI=phrap-1.080812-distrib.tar.gz
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=afb69d253c8b277d43dcb738ddb3e9c3
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=e72f3e08accb23ebf55562689dad5f46
diff --git a/metadata/md5-cache/sci-biology/phred-071220-r1 b/metadata/md5-cache/sci-biology/phred-071220-r1
index 45e2b2be4318..3edf5a6812fc 100644
--- a/metadata/md5-cache/sci-biology/phred-071220-r1
+++ b/metadata/md5-cache/sci-biology/phred-071220-r1
@@ -8,5 +8,5 @@ RESTRICT=fetch
 SLOT=0
 SRC_URI=phred-dist-071220.b-acd.tar.gz
 _eclass_exported_funcs=src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=e611bf900b7a37ed847baa138fd96bb6
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=92065ca72fd55796ea38e3d5ae9ee8b8
diff --git a/metadata/md5-cache/sci-biology/phylip-3.69-r1 b/metadata/md5-cache/sci-biology/phylip-3.69-r1
index d45125531ae1..77bbe1b1394b 100644
--- a/metadata/md5-cache/sci-biology/phylip-3.69-r1
+++ b/metadata/md5-cache/sci-biology/phylip-3.69-r1
@@ -9,5 +9,5 @@ RDEPEND=x11-libs/libXaw
 SLOT=0
 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.69.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=fb82491d16d5f2daf7dbdac4f7a7003f
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=e38b117238f85d8861b4bb7d82c617d2
diff --git a/metadata/md5-cache/sci-biology/phylip-3.696-r1 b/metadata/md5-cache/sci-biology/phylip-3.696-r1
index a66d9daae697..fbc58668b13a 100644
--- a/metadata/md5-cache/sci-biology/phylip-3.696-r1
+++ b/metadata/md5-cache/sci-biology/phylip-3.696-r1
@@ -9,5 +9,5 @@ RDEPEND=x11-libs/libXaw
 SLOT=0
 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=cbbb1bb5348a56ae12c42eca9a00d14e
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=974f8dc4ee6875c5d84eba7b501bf02a
diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
index 9d488338dd2d..8021d1395693 100644
--- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
+++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=78d402b47016f50f5ce4e6c03c25027e
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=fcca6fb4f9e88f5eb6a63a3ee0c79df7
diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103
index 3e4f3fd7e5cd..f985027fc356 100644
--- a/metadata/md5-cache/sci-biology/picard-1.103
+++ b/metadata/md5-cache/sci-biology/picard-1.103
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2
 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:java-pkg-2 src_configure:java-ant-2 src_compile:java-pkg-2 src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	java-ant-2	d1abcccd8e9c606be17deacfe5c7368a	java-pkg-2	eb1f0d7d874162c70088f5ae32c31ee7	java-utils-2	b31a7fe19a47c6a2d901f6de949e5209	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=f33422ec9832c259cea81a18a74a8503
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	java-ant-2	111e7a22bb74fb783039d11dc169e599	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=09627e6bb74ee9997324bde01a56bcbd
diff --git a/metadata/md5-cache/sci-biology/piler-1.0 b/metadata/md5-cache/sci-biology/piler-1.0
index dfe28a2a04ed..8ac687e3b257 100644
--- a/metadata/md5-cache/sci-biology/piler-1.0
+++ b/metadata/md5-cache/sci-biology/piler-1.0
@@ -8,5 +8,5 @@ RDEPEND=|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals
 SLOT=0
 SRC_URI=mirror://gentoo/piler-1.0.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=21b4e96ca4b5ec6e0b82c8f783b16377
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=00e66df3164d653d3d31dab66e7bcc72
diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0 b/metadata/md5-cache/sci-biology/pilercr-1.0
index 4aa30a116aee..c8c003b5183e 100644
--- a/metadata/md5-cache/sci-biology/pilercr-1.0
+++ b/metadata/md5-cache/sci-biology/pilercr-1.0
@@ -7,5 +7,5 @@ LICENSE=public-domain
 SLOT=0
 SRC_URI=mirror://gentoo/pilercr-1.0.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=aa8c595d04f385296c2672be29f21d38
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d26cc197648905719cc411994f17890e
diff --git a/metadata/md5-cache/sci-biology/plink-1.07-r1 b/metadata/md5-cache/sci-biology/plink-1.07-r1
index edeb7d33b171..e691ddfd2028 100644
--- a/metadata/md5-cache/sci-biology/plink-1.07-r1
+++ b/metadata/md5-cache/sci-biology/plink-1.07-r1
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=1514de2a10550eec3709c846e4e3f075
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=b659cc5ab8af123ceaf15f1349214345
diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
index fafb81facc67..81cf79334282 100644
--- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514
+++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
@@ -9,5 +9,5 @@ RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack
 SLOT=0
 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=0bc8bcce219140bdc4ef2672a457932a
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=570249dc23feeff7b47b3e81df358196
diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1
index 2bb1a5a936a3..02070662da1c 100644
--- a/metadata/md5-cache/sci-biology/poa-2-r1
+++ b/metadata/md5-cache/sci-biology/poa-2-r1
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=c694b3bde674902a9601f856356cf311
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=4f0b8d6c2192465644af4890a995d48a
diff --git a/metadata/md5-cache/sci-biology/prank-140603 b/metadata/md5-cache/sci-biology/prank-140603
index 85b4f13d2ed7..e58373fa40b7 100644
--- a/metadata/md5-cache/sci-biology/prank-140603
+++ b/metadata/md5-cache/sci-biology/prank-140603
@@ -7,5 +7,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=http://wasabiapp.org/download/prank/prank.source.140603.tgz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9614f3ce8158ee42a3cb810943e01473
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=17023476000980284365a9c0ed04a6f0
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.5 b/metadata/md5-cache/sci-biology/primer3-2.3.5
index fb188fa4f47f..2544a323bb6d 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.5
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.5
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/primer3/2.3.5/primer3-2.3.5.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=89df84d198ccabc6e171bd151b0d86e4
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=b7f3f26331b5241399cbf40ac9eeeabc
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.6 b/metadata/md5-cache/sci-biology/primer3-2.3.6
index 24765eb69d64..c824e278bdaa 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.6
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.6
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/primer3/2.3.6/primer3-src-2.3.6.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=fbc5952f543d327fcb6b99cf43241909
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=e95de8dec7345b06ff7fac5c6c009d53
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7 b/metadata/md5-cache/sci-biology/primer3-2.3.7
index d2672deca685..ee3568720043 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.7
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.7
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2d22589e3f0ecb3ac49bc9fde62ab1f2
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=8b3d4a5940e96102e289acad426724d9
diff --git a/metadata/md5-cache/sci-biology/prints-39.0 b/metadata/md5-cache/sci-biology/prints-39.0
index 254d2d314a33..bbce836f0aa4 100644
--- a/metadata/md5-cache/sci-biology/prints-39.0
+++ b/metadata/md5-cache/sci-biology/prints-39.0
@@ -10,4 +10,4 @@ RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prints-39.0.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=abfe2ca3466d22c63ac666737b3b9f10
+_md5_=662924d1f18d2f83d3215fa86b909328
diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1
index 604b983e782a..5f63d00347dd 100644
--- a/metadata/md5-cache/sci-biology/probcons-1.12-r1
+++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1
@@ -8,5 +8,5 @@ RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot
 SLOT=0
 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=7832c26904cb58b1ed5527c9b9cae1c8
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=19a24bd3c543d599d5b3392e66b7022e
diff --git a/metadata/md5-cache/sci-biology/prodigal-2.6.3 b/metadata/md5-cache/sci-biology/prodigal-2.6.3
index 90c274712119..773d8f89165b 100644
--- a/metadata/md5-cache/sci-biology/prodigal-2.6.3
+++ b/metadata/md5-cache/sci-biology/prodigal-2.6.3
@@ -7,5 +7,5 @@ LICENSE=GPL-3
 SLOT=0
 SRC_URI=https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz -> prodigal-2.6.3.tar.gz
 _eclass_exported_funcs=src_configure:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=e79664649e79332286131aa897a44047
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=9cea3bcc55e864076d7e4b542f657f96
diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.39 b/metadata/md5-cache/sci-biology/profphd-1.0.39
index ebcd5284ce1a..e0ba8f9da8b2 100644
--- a/metadata/md5-cache/sci-biology/profphd-1.0.39
+++ b/metadata/md5-cache/sci-biology/profphd-1.0.39
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profph
 SLOT=0
 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.39.tar.xz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=d6903679ef8eac2c123c4556ef80c8ec
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=8e866cc812e134cdc7a7837e5b60aa21
diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.40 b/metadata/md5-cache/sci-biology/profphd-1.0.40
index 433ac489fe8e..970d86ee4a97 100644
--- a/metadata/md5-cache/sci-biology/profphd-1.0.40
+++ b/metadata/md5-cache/sci-biology/profphd-1.0.40
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profph
 SLOT=0
 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.40.tar.xz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=5278fe0b86d8b4447a0f4492214757a0
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=b641a6cfd444fa4b83d5963246948636
diff --git a/metadata/md5-cache/sci-biology/prosite-2017.02 b/metadata/md5-cache/sci-biology/prosite-2017.02
index 473c91a4f50f..fc8cc9c959dc 100644
--- a/metadata/md5-cache/sci-biology/prosite-2017.02
+++ b/metadata/md5-cache/sci-biology/prosite-2017.02
@@ -10,4 +10,4 @@ RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=ftp://ftp.expasy.org/databases/prosite/old_releases/prosite2017_02.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=85afc68d4698f5bb35847568f5ee4f51
+_md5_=390ff0ea61f44c9ea889684cad12b2b2
diff --git a/metadata/md5-cache/sci-biology/psipred-3.2.1 b/metadata/md5-cache/sci-biology/psipred-3.2.1
index f78c2c52be98..6da060ce9da5 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.2.1
+++ b/metadata/md5-cache/sci-biology/psipred-3.2.1
@@ -9,5 +9,5 @@ RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred321.tar.gz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	prefix	99dcca42e6528d8fe3c214bf5731aaf2	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=2ad13218bde0c6cf5a5ab5caee939086
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	prefix	df8265631f8bf5f5df387e9b987121f9	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=bf7aa50ff789d669fe4846e0e41828d7
diff --git a/metadata/md5-cache/sci-biology/psipred-3.3 b/metadata/md5-cache/sci-biology/psipred-3.3
index 4d869f14c7b3..7ad5dc2f9fd0 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.3
+++ b/metadata/md5-cache/sci-biology/psipred-3.3
@@ -9,5 +9,5 @@ RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.3.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	prefix	99dcca42e6528d8fe3c214bf5731aaf2	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=369220ea4bf38d546a107d8503320973
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	prefix	df8265631f8bf5f5df387e9b987121f9	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=d719359ecbbd5c0825e93788cc4f0af1
diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4
index f09e8b61d5a8..7688b5d6c27c 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.4
+++ b/metadata/md5-cache/sci-biology/psipred-3.4
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb s
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	prefix	99dcca42e6528d8fe3c214bf5731aaf2	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=8cae719195a0bc1655657fc75a690b0f
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	prefix	df8265631f8bf5f5df387e9b987121f9	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=671e20dbd509ebdd9e9c492e2c53b6a1
diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5
index b9eab5a0433f..c3973c096155 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.5
+++ b/metadata/md5-cache/sci-biology/psipred-3.5
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb s
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	prefix	99dcca42e6528d8fe3c214bf5731aaf2	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=8cae719195a0bc1655657fc75a690b0f
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	prefix	df8265631f8bf5f5df387e9b987121f9	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=671e20dbd509ebdd9e9c492e2c53b6a1
diff --git a/metadata/md5-cache/sci-biology/pysam-0.9.0 b/metadata/md5-cache/sci-biology/pysam-0.9.0
index cc5d36a2829c..6c8596b23e6c 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.9.0
+++ b/metadata/md5-cache/sci-biology/pysam-0.9.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe
 SLOT=0
 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.9.0.tar.gz -> pysam-0.9.0.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:distutils-r1 src_compile:- src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1	ff7a6238714c20c6b0ba05d9956b5ad8	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
-_md5_=4347b0e64a8de2968bb9d80fc701d2ea
+_eclasses_=distutils-r1	039ba10839816478cfb070fdeb053906	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	xdg-utils	178a84136f416b8ea1a857717eacd21c
+_md5_=0f649b2f11f84f90b841d9b791afb9ea
diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2 b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2
index e8b8a5d1fb32..d991e58f9b6a 100644
--- a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2
+++ b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r2
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl sci-biology/hmmer
 SLOT=0
 SRC_URI=mirror://gentoo/qrna-2.0.3c.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2d6f354a4083037008b24f7323b920a6
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=35f5a46d4490059eb478c8a8c7998ac5
diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6
index ec06e9ae37ca..aefe8fc57719 100644
--- a/metadata/md5-cache/sci-biology/raxml-7.2.6
+++ b/metadata/md5-cache/sci-biology/raxml-7.2.6
@@ -9,5 +9,5 @@ REQUIRED_USE=cpu_flags_x86_sse3
 SLOT=0
 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6ce26877e006d2d080de7e0b2d55a7b7
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=f2b8e0b4e5701d9b20bcbf9151c9b868
diff --git a/metadata/md5-cache/sci-biology/rebase-1701 b/metadata/md5-cache/sci-biology/rebase-1701
index e12c4df79766..650acff064b7 100644
--- a/metadata/md5-cache/sci-biology/rebase-1701
+++ b/metadata/md5-cache/sci-biology/rebase-1701
@@ -11,4 +11,4 @@ RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1701.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=ab1273ba6a967f45da74fdecf1d1c84c
+_md5_=68457638d36f4995a29fb959283e85a4
diff --git a/metadata/md5-cache/sci-biology/rebase-1702 b/metadata/md5-cache/sci-biology/rebase-1702
index ee2dc75d7c3e..3e55ccf28a27 100644
--- a/metadata/md5-cache/sci-biology/rebase-1702
+++ b/metadata/md5-cache/sci-biology/rebase-1702
@@ -11,4 +11,4 @@ RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1702.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=dde9bc2abd9c51b448f10e38da9a4917
+_md5_=b934757ccdbd2999376f90a29fabbeb5
diff --git a/metadata/md5-cache/sci-biology/rebase-1703 b/metadata/md5-cache/sci-biology/rebase-1703
index 134095fb5278..2e608d41aad4 100644
--- a/metadata/md5-cache/sci-biology/rebase-1703
+++ b/metadata/md5-cache/sci-biology/rebase-1703
@@ -11,4 +11,4 @@ RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1703.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=dde9bc2abd9c51b448f10e38da9a4917
+_md5_=b934757ccdbd2999376f90a29fabbeb5
diff --git a/metadata/md5-cache/sci-biology/recon-1.08 b/metadata/md5-cache/sci-biology/recon-1.08
index b15d73561e4c..713bf0cb6389 100644
--- a/metadata/md5-cache/sci-biology/recon-1.08
+++ b/metadata/md5-cache/sci-biology/recon-1.08
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/RECON-1.08.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=a716a149276bca3cf2f23ec0059b4590
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=2ddd537d912c7c88b6f0b0d203a51613
diff --git a/metadata/md5-cache/sci-biology/repeatmasker-4.0.1 b/metadata/md5-cache/sci-biology/repeatmasker-4.0.1
index 5373c480b08e..738d2e4d9ff2 100644
--- a/metadata/md5-cache/sci-biology/repeatmasker-4.0.1
+++ b/metadata/md5-cache/sci-biology/repeatmasker-4.0.1
@@ -8,4 +8,4 @@ RDEPEND=sci-biology/rmblast sci-biology/trf sci-biology/repeatmasker-libraries
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/RepeatMasker-open-4-0-1.tar.gz
 _eclass_exported_funcs=src_configure:- src_install:-
-_md5_=b28fa4d66bb5be71f31642c296093d11
+_md5_=9dc3465c819cad44a5a8175a267222d4
diff --git a/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418 b/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
index 995e2041f3bf..4358b1f80ff4 100644
--- a/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
+++ b/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
@@ -8,4 +8,4 @@ RESTRICT=fetch
 SLOT=0
 SRC_URI=repeatmaskerlibraries-20120418.tar.gz
 _eclass_exported_funcs=src_install:-
-_md5_=b4d050c303955f9f4d69a65b4f42b2ad
+_md5_=0cb0252babed9e448a9b2b06eaa2220c
diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
index 5f503feb0764..a6d4ea9d2ae6 100644
--- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1
+++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
@@ -9,5 +9,5 @@ RDEPEND=dev-libs/boost
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=4c288235ce00754a3b76fa3068a818b2
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=7aa6de8741afab9d848f4cbada44c7ad
diff --git a/metadata/md5-cache/sci-biology/rnaview-20040713-r4 b/metadata/md5-cache/sci-biology/rnaview-20040713-r4
index 173880bc8352..86c673490ae9 100644
--- a/metadata/md5-cache/sci-biology/rnaview-20040713-r4
+++ b/metadata/md5-cache/sci-biology/rnaview-20040713-r4
@@ -7,5 +7,5 @@ LICENSE=public-domain
 SLOT=0
 SRC_URI=mirror://gentoo/rnaview-20040713.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=1c8b32457e15004dec5512d5a847b44a
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=788c156d45287bef4f6aa876055bde4c
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.12 b/metadata/md5-cache/sci-biology/samtools-0.1.12
index df30836b80a4..031e0e1c4515 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.12
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.12
@@ -7,4 +7,4 @@ LICENSE=MIT
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-0.1.12a.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_install:-
-_md5_=dbd13692bde5f1bc8aca3971e257d35e
+_md5_=a6e636ceb88d36b5c34ddf51607ec4bf
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
index 5b2b989625c3..8428aa69b685 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-0.1.19.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=386582eb3ff9435a92dd20bdbd248cbc
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=02fe0265ea3255fc935c450795fd02d7
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
index 49cc79c85b1e..a39b492557ba 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
@@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0.1-legacy
 SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=1e7dbcbc9661826d1b34cbe736e9f360
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=fa48f0b2be780a9264eb9d727ec53335
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0 b/metadata/md5-cache/sci-biology/samtools-1.0
index f18ea83e0859..cf423b53c2ef 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0
+++ b/metadata/md5-cache/sci-biology/samtools-1.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=db99b61f10fd031a95c3ba948438e007
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a1815250c2526f494d3a289853305af7
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0-r1 b/metadata/md5-cache/sci-biology/samtools-1.0-r1
index dafbee193e6b..75656a39c0cd 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.0-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=cf94159379e0b14da650368a72d518dd
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=eafcbb12116c6dc7cafa2019c1f59a6b
diff --git a/metadata/md5-cache/sci-biology/samtools-1.1 b/metadata/md5-cache/sci-biology/samtools-1.1
index a61f6ca752ae..8d5698002eaa 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.1
+++ b/metadata/md5-cache/sci-biology/samtools-1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.1.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9233bca436af5041a19d8326e816d011
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6679f9bbda03dfce786745d678c7aa01
diff --git a/metadata/md5-cache/sci-biology/samtools-1.2 b/metadata/md5-cache/sci-biology/samtools-1.2
index fe97c6e584a0..b62f221b7400 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.2
+++ b/metadata/md5-cache/sci-biology/samtools-1.2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.2.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=75d7314287663a3f5ea5b17060bd2081
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=bf3c772addb118c6cad71a486f0a0cab
diff --git a/metadata/md5-cache/sci-biology/samtools-1.3-r1 b/metadata/md5-cache/sci-biology/samtools-1.3-r1
index db4fe79b29f3..49d1e61aac33 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.3-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.3-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.3.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=bf4d95b9d61aabecfc5d1eb4039ebc7d
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1199335ae2f11b7bcd30d9cdd3045a34
diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5
index 22978513046d..b7df3c780573 100644
--- a/metadata/md5-cache/sci-biology/seaview-4.3.5
+++ b/metadata/md5-cache/sci-biology/seaview-4.3.5
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11
 SLOT=0
 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=436865841ea6e60c1bfe4fd7726ef32a
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=38cc02682d853c813df2b6e81cbb51c5
diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4
index 218f2c922576..69b2f42b7a54 100644
--- a/metadata/md5-cache/sci-biology/seaview-4.5.4
+++ b/metadata/md5-cache/sci-biology/seaview-4.5.4
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11
 SLOT=0
 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=436865841ea6e60c1bfe4fd7726ef32a
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=38cc02682d853c813df2b6e81cbb51c5
diff --git a/metadata/md5-cache/sci-biology/seaview-4.6 b/metadata/md5-cache/sci-biology/seaview-4.6
index ff5d64b78d9d..7028f5773b1d 100644
--- a/metadata/md5-cache/sci-biology/seaview-4.6
+++ b/metadata/md5-cache/sci-biology/seaview-4.6
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11
 SLOT=0
 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=0f9003b242554f0e9834577d5eab9f40
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1a6723f1ab0e67cc0d63dd54a902900f
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index 436ea7fb78ed..b5326aa8b07b 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -10,5 +10,5 @@ REQUIRED_USE=python_targets_python2_7 cpu_flags_x86_sse4_1
 SLOT=1.4
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=14b7b2b979dd4f5008d8ba766ce1da8c
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=25cddcfb0d93a72423c977babe3d9edc
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
index 02626f0f25f3..db7c48f343ab 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=doc? ( python_targets_python2_7 ) test? ( python_targets_python2_7
 SLOT=0
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
 _eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:- src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=f51ed68479ff5ef5bbcdd896b74fc1ae
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=9803690e80de31f36ccc9bd7b1fadad5
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.0.1 b/metadata/md5-cache/sci-biology/shrimp-2.0.1
index 15b8edfee322..ac8eff49c0f3 100644
--- a/metadata/md5-cache/sci-biology/shrimp-2.0.1
+++ b/metadata/md5-cache/sci-biology/shrimp-2.0.1
@@ -10,5 +10,5 @@ RDEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs
 SLOT=0
 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_0_1.src.tar.gz
 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=ca9f79b1dc8cc6c457969f3bfc6dad48
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=33caa30e4cdcb3e86f4b1be8c6c30c46
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3
index a14bf0d31958..95956eb14e8e 100644
--- a/metadata/md5-cache/sci-biology/shrimp-2.2.3
+++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3
@@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz
 _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=4f8021ced803372cddeb27e1a3b6521c
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=98a7a2b9765ad5e245b1b7b9be67060b
diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20
index a83d99a32ebb..64cc392b7e09 100644
--- a/metadata/md5-cache/sci-biology/sibsim4-0.20
+++ b/metadata/md5-cache/sci-biology/sibsim4-0.20
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9df129026fb913d20a07f5dd4658f408
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=84a29c8972011ec4b86f3c8235a7b5d2
diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r2 b/metadata/md5-cache/sci-biology/sim4-20030921-r2
index 67c96e2cadae..5b7c67f555ad 100644
--- a/metadata/md5-cache/sci-biology/sim4-20030921-r2
+++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz
 _eclass_exported_funcs=src_configure:- src_install:-
-_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f2763a156e4cea98e9bbfefc06fbc776
+_eclasses_=multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=fca00baca723bafd7976eff8dccc5c26
diff --git a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
index a46ac721003f..de63023ff237 100644
--- a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
+++ b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/boost:=
 SLOT=0
 SRC_URI=http://www.birc.au.dk/~mailund/SNPFile/download/snpfile-2.0.1.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=7d7002f410131c7683d385e4c8a79c80
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=7c64014825a157024d03614c037abcfc
diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1
index 6cf154051c02..cfd78746c547 100644
--- a/metadata/md5-cache/sci-biology/stride-20011129-r1
+++ b/metadata/md5-cache/sci-biology/stride-20011129-r1
@@ -8,5 +8,5 @@ RESTRICT=mirror bindist
 SLOT=0
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=01b4d26980038bd00786a70c9cd79963
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=d73db26f06440dc2c2a1e25befe5d490
diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r1
index 12d7cd8f5f60..6bcaada78437 100644
--- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1
+++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r1
@@ -9,5 +9,5 @@ RDEPEND=sci-biology/clustalw sci-chemistry/tm-align
 SLOT=0
 SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_11.00.8cbe486/T-COFFEE_distribution_Version_11.00.8cbe486.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f6ad616b3dcf58a2f7c0551f7aea38a6
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a1771c6229fc2548e173d5592657c1b5
diff --git a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 b/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1
index 3d87d554fd86..49ca54581644 100644
--- a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1
+++ b/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/clustalw sci-chemistry/tm-align virtual/fortran
 SLOT=0
 SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_9.03.r1318/T-COFFEE_distribution_Version_9.03.r1318.tar.gz
 _eclass_exported_funcs=pkg_setup:fortran-2 src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	fortran-2	8200fc942c3b3c1fc75d4d5bfd0ba7a2	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=d6f0c1f80bcc0790b5e24d8e96f831bb
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	fortran-2	9773a6296d565bc8cf241891112a9705	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=369169186d5a67fbb6f2de9ebbc8fd6e
diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
index 057ae8658607..84cdfa634825 100644
--- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
+++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
@@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
 _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	python-single-r1	6793fc854691a2320226801400573568	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=0182a9a0e1edc7fff427a466a0747e4e
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	python-single-r1	4346485bdd137b2d301e993dad734668	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=67bcf40eef080ccf999e7cb3db1347e1
diff --git a/metadata/md5-cache/sci-biology/transfac-3.2-r1 b/metadata/md5-cache/sci-biology/transfac-3.2-r1
index 803d88857124..d62e5c6d7b59 100644
--- a/metadata/md5-cache/sci-biology/transfac-3.2-r1
+++ b/metadata/md5-cache/sci-biology/transfac-3.2-r1
@@ -10,4 +10,4 @@ RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=3
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/databases/transfac/transfac32.tar.Z
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=56b51d757fad328b618c00f2e3a0d196
+_md5_=d8fcea543b5af9fc877c63800e1bd6d3
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
index 2fdb5a611a6d..46ee0e8d9897 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
@@ -11,5 +11,5 @@ RESTRICT=test
 SLOT=0
 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
 _eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=9eb444bfbd258f8fbff3201843269bca
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6f933fde60eb23f0e50fbe5e137bbc7e
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index df3544039719..f7ed29eedd7a 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -9,5 +9,5 @@ RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	wxwidgets	9b34ce3ca77f4e418e8fd9951c4c1cb1
-_md5_=7a496dd9e0843318e00a081f20345aa1
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	wxwidgets	04e063b0eff26daaea83d859dd9d6e05
+_md5_=ce129f3e61a849cfd3654e5a9fa4b17a
diff --git a/metadata/md5-cache/sci-biology/trf-4.04-r1 b/metadata/md5-cache/sci-biology/trf-4.04-r1
index 8e8d66ad5a0a..814b168e1be5 100644
--- a/metadata/md5-cache/sci-biology/trf-4.04-r1
+++ b/metadata/md5-cache/sci-biology/trf-4.04-r1
@@ -8,4 +8,4 @@ RESTRICT=mirror bindist
 SLOT=0
 SRC_URI=http://tandem.bu.edu/trf/downloads/trf404.linux
 _eclass_exported_funcs=src_unpack:- src_install:-
-_md5_=a4bdadc1abe6a3101b66f7bb5c713494
+_md5_=51a51c14c6646aaa7d7494d561535729
diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2 b/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2
index 23626d5d518c..6fb33e411770 100644
--- a/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2
+++ b/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=mirror://gentoo/trnascan-se-1.23.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=058be692c482156e6c3af40ff90b77f3
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=1c3eff7aa970b6648343a3cd71ac2547
diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31
index 8534192d8e97..273c8ba5b759 100644
--- a/metadata/md5-cache/sci-biology/trnascan-se-1.31
+++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz
 _eclass_exported_funcs=src_unpack:unpacker src_prepare:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be
-_md5_=439f7437ebed7cc03c5bda708d926e42
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35
+_md5_=f5e80fc8c3f0924edd45360e54272906
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index fc05a58d85e6..fbf1b66bd417 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -9,5 +9,5 @@ LICENSE=public-domain
 SLOT=0
 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils
-_eclasses_=cmake-utils	014267c4475c1a625ecec5b16e0db1e6	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=89b386f85219a8ab58768665104a14ba
+_eclasses_=cmake-utils	dd1d263f83f0791bd433b134f40db39b	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=6adcbb8c658bdc3c40f797c61f5c58b0
diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260
index 2bed7287ba27..ef7784bd1ccc 100644
--- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260
+++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260
@@ -11,5 +11,5 @@ REQUIRED_USE=server? ( mysql )
 SLOT=0
 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip
 _eclass_exported_funcs=pkg_prerm:webapp pkg_postinst:- pkg_setup:webapp src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	webapp	42c6ef7af496b228f9854b3c81e4b226
-_md5_=291204ab910d7f2b77d52afc8fcb6675
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	webapp	a76ebd3cb5649737496e8238992dd7ca
+_md5_=e8bc8c4496d6c751b8f8452324e059f4
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8 b/metadata/md5-cache/sci-biology/unafold-3.8
index b4a2ec4c29c7..5b0ad61b00c6 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8
+++ b/metadata/md5-cache/sci-biology/unafold-3.8
@@ -7,5 +7,5 @@ LICENSE=unafold
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=2d1fd089d7fa16c17dc630855c23d919
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=ebd02415ef212687d4df041d88c3a06a
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index 413d1dc6dae4..6d26b128d1b7 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -8,5 +8,5 @@ LICENSE=unafold
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
 _eclass_exported_funcs=src_prepare:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=5a329c11948ef9c2c8a9dc980c9b5d8e
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=f6e357557efc2f86eab0adadd32142ce
diff --git a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
index b8da08d27fb8..0ef0cd78bb1f 100644
--- a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
+++ b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
@@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl !sci-biology/ncbi-tools++
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/12_0_0/ncbi_cxx--12_0_0.tar.gz
 _eclass_exported_funcs=src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=5b182e435bf1a57f378721081bcde2f0
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=bc882208706b78e231cbfd78c7b5799e
diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2
index 7adf94a08b75..e840deb26a37 100644
--- a/metadata/md5-cache/sci-biology/vaal-46233-r2
+++ b/metadata/md5-cache/sci-biology/vaal-46233-r2
@@ -10,5 +10,5 @@ RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg
 SLOT=0
 SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=b3fbe6ef9596873fc6cd7d3ce2e3b7e7
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=93fba567a04e46611159af4ccc822131
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index f38883595f5e..57b982ad1f88 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	perl-functions	aac50de73be0a80ebe780e0b20850130	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f478579fae686acfaa9a179242a06188
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	perl-functions	ca1237f4863eb3e83ab1462927f981c2	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=c40169dc993f3444a3e2f41ad69a920d
diff --git a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
index 57b53771b369..08417dda73c3 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
+++ b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz
 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=c6306e29894355e18255d2d534627ead
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=a119a595dc7b0d122295010a78b3aa06
diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10
index 9c9ebd204319..9c9a803afc3c 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.2.10
+++ b/metadata/md5-cache/sci-biology/velvet-1.2.10
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	flag-o-matic	35067884fbff37bc0c8e7421c5315558	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6c8dee8e74b9fb4e57c4bc7e7bc7c782
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	flag-o-matic	979af9133d4de419fa98992355b07ca4	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=ac1199b35ef7b8a3ec440c5ce27c91a3
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index 2ebbef7cbf01..dac503871da8 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	ff7a6238714c20c6b0ba05d9956b5ad8	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
-_md5_=04ba30f9eea89eb39f613ebf22fa3936
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	distutils-r1	039ba10839816478cfb070fdeb053906	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35	xdg-utils	178a84136f416b8ea1a857717eacd21c
+_md5_=1e58c830b49ced05ae9960fcc2dead13
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index 306e1e51e0fd..ef8d17161270 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
 _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	distutils-r1	ff7a6238714c20c6b0ba05d9956b5ad8	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multibuild	742139c87a9fa3766f0c2b155e5522bf	multilib	165fc17c38d1b11dac2008280dab6e80	multiprocessing	eb9be4b678c4e71f3f530a767df31912	perl-functions	aac50de73be0a80ebe780e0b20850130	perl-module	f6549146ea31a902e20b5f2e6f244358	python-r1	1f16d4a5e3af0ebb79bbe131576e0618	python-utils-r1	50dad5f912d4c16c130f5679777f25e8	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	unpacker	45d07319df5f40ee6af58418b0f930be	xdg-utils	e2b2bd56125ce8cf59ce30c642b59d48
-_md5_=3954a3e2e9c73028e62da2ba8a8cb0fd
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	autotools-utils	042d779bc872564b26c4e5cf018db8ed	distutils-r1	039ba10839816478cfb070fdeb053906	eutils	3c847a0129fed780bd709b98e426f89c	libtool	48b1b9f6194d2842456514d1184ca72e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	0236be304ee52e7f179ed2f337075515	multiprocessing	284a473719153462f3e974d86c8cb81c	perl-functions	ca1237f4863eb3e83ab1462927f981c2	perl-module	e64d78a54693f92bbe90a62f2efeb6cb	python-r1	e0edbf5130eaefe107b8c8872bd818bc	python-utils-r1	316c531873247e48befb99900e5aa2ed	toolchain-funcs	53b75b4a49cf3e61530a523804045432	unpacker	76ddf385f3c212c12857bb8ec2a8bd35	xdg-utils	178a84136f416b8ea1a857717eacd21c
+_md5_=b2a6486af275e75c6365ab7eeba1e0bd
diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1
index 4ec3786fe68a..c0cdc0f9a601 100644
--- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1
+++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1
@@ -10,5 +10,5 @@ RDEPEND=x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4pe
 SLOT=0
 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2
 _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6c83897b1a2bb49ef9121d92fd85c37d
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=6ebc94c9eb0083edd0308af8a336afe0
diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
index d613139dba13..cdfa22d58524 100644
--- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
+++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
@@ -10,5 +10,5 @@ RDEPEND=~sci-biology/hmmer-2.3.2
 SLOT=0
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz
 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils	708f85bc1bf00876604e223fb56e062a	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783	versionator	99ae9d758cbe7cfed19170e7d48f5a9c
-_md5_=d239de1cf76014a4fc5dece44aacda58
+_eclasses_=eutils	3c847a0129fed780bd709b98e426f89c	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=3fc50009d15dddcf126bbf0735404920
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index 463ff8150513..e350d0475c52 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -10,5 +10,5 @@ RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
 _eclass_exported_funcs=src_prepare:- src_configure:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=5b1274fdf102f9e339c65b66756f9e51
+_eclasses_=autotools	7027963e8e8cc12c91117bdb9225dc26	libtool	48b1b9f6194d2842456514d1184ca72e	multilib	0236be304ee52e7f179ed2f337075515	toolchain-funcs	53b75b4a49cf3e61530a523804045432
+_md5_=3a4ba9b4e7b8efec51cfc79d261fefd3
author	Repository QA checks <repo-qa-checks@gentoo.org>	2017-02-28 20:40:56 +0000
committer	Repository QA checks <repo-qa-checks@gentoo.org>	2017-02-28 20:40:56 +0000
commit	6e147bef2a5027cb80c5e4f826a9ffb09f953be4 (patch)
tree	6cf430b4c8562ceca272983abe5c6463436056d1 /metadata/md5-cache/sci-biology
parent	Merge updates from master (diff)
download	gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.tar.gz gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.tar.bz2 gentoo-6e147bef2a5027cb80c5e4f826a9ffb09f953be4.zip