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authorRepository mirror & CI <repomirrorci@gentoo.org>2021-10-11 15:06:39 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2021-10-11 15:06:39 +0000
commitbb9043cb96b179f66df274bba5870093e1b2b48c (patch)
treef306033dac87d410d48bc3d39caa7f6582aa629f /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-bb9043cb96b179f66df274bba5870093e1b2b48c.tar.gz
gentoo-bb9043cb96b179f66df274bba5870093e1b2b48c.tar.bz2
gentoo-bb9043cb96b179f66df274bba5870093e1b2b48c.zip
2021-10-11 15:06:36 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.10.215
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.16.0.1-r117
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.10-r114
3 files changed, 0 insertions, 46 deletions
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.10.2 b/metadata/md5-cache/sci-biology/bcftools-1.10.2
deleted file mode 100644
index df7b542a62b8..000000000000
--- a/metadata/md5-cache/sci-biology/bcftools-1.10.2
+++ /dev/null
@@ -1,15 +0,0 @@
-DEFINED_PHASES=configure prepare setup
-DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
-DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
-EAPI=7
-HOMEPAGE=http://www.htslib.org
-INHERIT=python-single-r1
-IUSE=python_single_target_python3_8 python_single_target_python3_9
-KEYWORDS=~amd64 ~x86
-LICENSE=MIT
-RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
-REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 )
-SLOT=0
-SRC_URI=https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
-_eclasses_=eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 4b66d835ec72e021e359bb81eacfe988 python-utils-r1 655fe65f186504e455c2f3116808fda8 python-single-r1 d46c125afba8be02eb1cd7104bac6e9c
-_md5_=73b8ffce0b88618f264d8ad775c675d5
diff --git a/metadata/md5-cache/sci-biology/pysam-0.16.0.1-r1 b/metadata/md5-cache/sci-biology/pysam-0.16.0.1-r1
deleted file mode 100644
index 67cb54446599..000000000000
--- a/metadata/md5-cache/sci-biology/pysam-0.16.0.1-r1
+++ /dev/null
@@ -1,17 +0,0 @@
-BDEPEND=dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?] <dev-python/setuptools-58[python_targets_python3_8(-)?,python_targets_python3_9(-)?] test? ( =sci-biology/bcftools-1.10* =sci-biology/samtools-1.10* ) test? ( =sci-libs/htslib-1.10*:= >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?]
-DEFINED_PHASES=compile configure install prepare test
-DEPEND==sci-libs/htslib-1.10*:=
-DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
-EAPI=7
-HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
-INHERIT=distutils-r1
-IUSE=test python_targets_python3_8 python_targets_python3_9
-KEYWORDS=~amd64 ~x86
-LICENSE=MIT
-RDEPEND==sci-libs/htslib-1.10*:= python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?]
-REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
-RESTRICT=!test? ( test )
-SLOT=0
-SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.16.0.1.tar.gz -> pysam-0.16.0.1.tar.gz
-_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 4b66d835ec72e021e359bb81eacfe988 multibuild 05a584848db4901c97fcd94ae7cc3a97 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 655fe65f186504e455c2f3116808fda8 python-r1 e574a3642f886323f18f867ecc4d91c4 distutils-r1 252d4f554e611b0af601160a9c7be049
-_md5_=a0621e9e341cbff7700c182a781b9738
diff --git a/metadata/md5-cache/sci-biology/samtools-1.10-r1 b/metadata/md5-cache/sci-biology/samtools-1.10-r1
deleted file mode 100644
index 53d3aa754dfb..000000000000
--- a/metadata/md5-cache/sci-biology/samtools-1.10-r1
+++ /dev/null
@@ -1,14 +0,0 @@
-BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:=[unicode(+)] sys-libs/zlib:=
-DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
-EAPI=7
-HOMEPAGE=http://www.htslib.org/
-INHERIT=autotools toolchain-funcs
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
-LICENSE=MIT
-RDEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:=[unicode(+)] sys-libs/zlib:=
-SLOT=0
-SRC_URI=mirror://sourceforge/samtools/samtools-1.10.tar.bz2
-_eclasses_=gnuconfig 262062cef0ba4f22b397193da514a350 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 4b66d835ec72e021e359bb81eacfe988 libtool 241a8f577b9781a42a7421e53448a44e autotools c9df06c186913b43eb211100ef5fe2cf
-_md5_=421db8c182476986b3e15d19e2ec8922