2019-12-11 00:26:11 UTC

18 files changed, 52 insertions, 125 deletions

diff --git a/metadata/md5-cache/media-sound/alsamixergui-0.9.0.1.2-r4 b/metadata/md5-cache/media-sound/alsamixergui-0.9.0.1.2-r4
index eeb18c521de2..140db4469dd9 100644
--- a/metadata/md5-cache/media-sound/alsamixergui-0.9.0.1.2-r4
+++ b/metadata/md5-cache/media-sound/alsamixergui-0.9.0.1.2-r4
@@ -1,12 +1,13 @@
+BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
-DEPEND=media-libs/alsa-lib media-sound/alsa-utils x11-libs/fltk:1 >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/alsa-lib:= media-sound/alsa-utils x11-libs/fltk:1
 DESCRIPTION=FLTK based amixer Frontend
-EAPI=4
+EAPI=7
 HOMEPAGE=https://www.gentoo.org/
 KEYWORDS=amd64 arm ppc ppc64 sparc x86
 LICENSE=GPL-2
-RDEPEND=media-libs/alsa-lib media-sound/alsa-utils x11-libs/fltk:1
+RDEPEND=media-libs/alsa-lib:= media-sound/alsa-utils x11-libs/fltk:1
 SLOT=0
 SRC_URI=mirror://gentoo/alsamixergui-0.9.0rc1-2.tar.gz
-_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	8a43b9830f1e64a7a5fc0a276afa0275	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=8220d8804510ca73ee5de370b1ea4ebb
+_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	desktop	b1d22ac8bdd4679ab79c71aca235009d	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	8a43b9830f1e64a7a5fc0a276afa0275	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=c858c7218d7a98d6a215e86983f109d8
diff --git a/metadata/md5-cache/media-sound/flac123-0.0.12 b/metadata/md5-cache/media-sound/flac123-0.0.12
index ffa6c317e58f..2bbd50730c66 100644
--- a/metadata/md5-cache/media-sound/flac123-0.0.12
+++ b/metadata/md5-cache/media-sound/flac123-0.0.12
@@ -1,13 +1,13 @@
 BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=prepare
-DEPEND=dev-libs/popt media-libs/flac media-libs/libao media-libs/libogg
+DEPEND=dev-libs/popt:= media-libs/flac:= media-libs/libao:= media-libs/libogg
 DESCRIPTION=console app for playing FLAC audio files
 EAPI=7
 HOMEPAGE=http://flac-tools.sourceforge.net
 KEYWORDS=~alpha amd64 arm ppc ppc64 sh sparc x86
 LICENSE=GPL-2
-RDEPEND=dev-libs/popt media-libs/flac media-libs/libao media-libs/libogg
+RDEPEND=dev-libs/popt:= media-libs/flac:= media-libs/libao:= media-libs/libogg
 SLOT=0
 SRC_URI=mirror://sourceforge/flac-tools/flac123-0.0.12-release.tar.gz
 _eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=6aa5d80e159e84c2dab52e86b161416c
+_md5_=d25378d6c6a9cf3ee49de353caf5f5dc
diff --git a/metadata/md5-cache/media-sound/gimmix-0.5.7.2-r1 b/metadata/md5-cache/media-sound/gimmix-0.5.7.2-r1
index 60d09a5e191d..ecf817d7d0a2 100644
--- a/metadata/md5-cache/media-sound/gimmix-0.5.7.2-r1
+++ b/metadata/md5-cache/media-sound/gimmix-0.5.7.2-r1
@@ -1,13 +1,14 @@
+BDEPEND=virtual/pkgconfig dev-util/intltool >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
-DEPEND=>=media-libs/libmpd-0.17 gnome-base/libglade x11-libs/gtk+:2 cover? ( net-libs/libnxml net-misc/curl ) lyrics? ( net-libs/libnxml net-misc/curl ) taglib? ( >=media-libs/taglib-1.5 ) virtual/pkgconfig dev-util/intltool >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/libmpd:= gnome-base/libglade:= x11-libs/gtk+:2 cover? ( net-libs/libnxml:= net-misc/curl:= ) lyrics? ( net-libs/libnxml:= net-misc/curl:= ) taglib? ( media-libs/taglib:= )
 DESCRIPTION=a graphical music player daemon (MPD) client using GTK+2
-EAPI=4
+EAPI=7
 HOMEPAGE=https://launchpad.net/gimmix
 IUSE=cover lyrics taglib
 KEYWORDS=amd64 ~ppc x86
 LICENSE=GPL-2
-RDEPEND=>=media-libs/libmpd-0.17 gnome-base/libglade x11-libs/gtk+:2 cover? ( net-libs/libnxml net-misc/curl ) lyrics? ( net-libs/libnxml net-misc/curl ) taglib? ( >=media-libs/taglib-1.5 )
+RDEPEND=media-libs/libmpd:= gnome-base/libglade:= x11-libs/gtk+:2 cover? ( net-libs/libnxml:= net-misc/curl:= ) lyrics? ( net-libs/libnxml:= net-misc/curl:= ) taglib? ( media-libs/taglib:= )
 SLOT=0
 SRC_URI=mirror://gentoo/gimmix-0.5.7.2.tar.bz2
-_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=22ce36f6474390d37fadab6ddc9941d1
+_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=d63c8b3bf2e59117c1a46f7a19520522
diff --git a/metadata/md5-cache/media-sound/podcatcher-3.1.6 b/metadata/md5-cache/media-sound/podcatcher-3.1.6
index f63c11dd3a3b..b05dbeed7e60 100644
--- a/metadata/md5-cache/media-sound/podcatcher-3.1.6
+++ b/metadata/md5-cache/media-sound/podcatcher-3.1.6
@@ -1,11 +1,11 @@
 DEFINED_PHASES=install
 DEPEND=>=dev-lang/ruby-1.8.2
 DESCRIPTION=Podcast client for the command-line written in Ruby
-EAPI=4
+EAPI=7
 HOMEPAGE=http://podcatcher.rubyforge.org/
 KEYWORDS=~amd64 ~ppc ~x86
 LICENSE=GPL-2
 RDEPEND=>=dev-lang/ruby-1.8.2
 SLOT=0
 SRC_URI=http://rubyforge.org/frs/download.php/76053/podcatcher-3.1.6.tar.gz
-_md5_=963b306155fd48d126cf9ace9027c290
+_md5_=533280cea24fc5820ef3aa6f0c296f00
diff --git a/metadata/md5-cache/media-sound/retrovol-0.13 b/metadata/md5-cache/media-sound/retrovol-0.13
index cd0dc4983cc2..5806027402ab 100644
--- a/metadata/md5-cache/media-sound/retrovol-0.13
+++ b/metadata/md5-cache/media-sound/retrovol-0.13
@@ -1,7 +1,8 @@
-DEFINED_PHASES=compile configure install postinst prepare unpack
-DEPEND=x11-libs/gtk+:2 virtual/pkgconfig nls? ( sys-devel/gettext )
+BDEPEND=virtual/pkgconfig nls? ( sys-devel/gettext )
+DEFINED_PHASES=configure postinst
+DEPEND=x11-libs/gtk+:2
 DESCRIPTION=Systemtray volume mixer applet from PuppyLinux
-EAPI=4
+EAPI=7
 HOMEPAGE=http://puppylinux.org/wikka/Retrovol
 IUSE=nls
 KEYWORDS=~amd64 ~x86
@@ -9,5 +10,4 @@ LICENSE=GPL-3 LGPL-3 public-domain
 RDEPEND=x11-libs/gtk+:2
 SLOT=0
 SRC_URI=http://www.browserloadofcoolness.com/software/puppy/PETget/retrovol-0.13.tar.gz
-_eclasses_=base	2ec5c64f5de125f0c65a927c4c128fef	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	l10n	97f2753e3f1f3753d53d856c7c0bbb0b	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=bc789c6d4a46b5185db1b3c694063a0f
+_md5_=4f3afb943d9728134d190d8f3da17946
diff --git a/metadata/md5-cache/media-sound/ttaenc-3.4.1-r1 b/metadata/md5-cache/media-sound/ttaenc-3.4.1-r1
index 9223af95ef6f..5b2f7de78808 100644
--- a/metadata/md5-cache/media-sound/ttaenc-3.4.1-r1
+++ b/metadata/md5-cache/media-sound/ttaenc-3.4.1-r1
@@ -1,11 +1,10 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=sys-apps/sed
+DEFINED_PHASES=configure install
 DESCRIPTION=True Audio Compressor Software
-EAPI=4
+EAPI=7
 HOMEPAGE=http://tta.sourceforge.net
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/tta/ttaenc-3.4.1-src.tgz
 _eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=3e38c08a3279638fa3d8dd90ad2d5fd4
+_md5_=994b8ee0614e921377a04965f5bc84bd
diff --git a/metadata/md5-cache/media-sound/volumeicon-0.4.6 b/metadata/md5-cache/media-sound/volumeicon-0.4.6
deleted file mode 100644
index 6166b0fa6b50..000000000000
--- a/metadata/md5-cache/media-sound/volumeicon-0.4.6
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=configure prepare
-DEPEND=>=dev-libs/glib-2 media-libs/alsa-lib >=x11-libs/gtk+-2.16:2 x11-libs/libX11 libnotify? ( >=x11-libs/libnotify-0.7 ) virtual/pkgconfig
-DESCRIPTION=A lightweight volume control that sits in your systray
-EAPI=4
-HOMEPAGE=http://softwarebakery.com/maato/volumeicon.html
-IUSE=libnotify
-KEYWORDS=amd64 x86
-LICENSE=GPL-3
-RDEPEND=>=dev-libs/glib-2 media-libs/alsa-lib >=x11-libs/gtk+-2.16:2 x11-libs/libX11 libnotify? ( >=x11-libs/libnotify-0.7 )
-SLOT=0
-SRC_URI=http://softwarebakery.com/maato/files/volumeicon/volumeicon-0.4.6.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=354434b9d0a9dbf7b46e0080eee25028
diff --git a/metadata/md5-cache/media-sound/wavbreaker-0.11 b/metadata/md5-cache/media-sound/wavbreaker-0.11
index a3ec21d41ccf..dd0a7c309a88 100644
--- a/metadata/md5-cache/media-sound/wavbreaker-0.11
+++ b/metadata/md5-cache/media-sound/wavbreaker-0.11
@@ -1,13 +1,14 @@
+BDEPEND=virtual/pkgconfig nls? ( sys-devel/gettext ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
-DEPEND=dev-libs/libxml2 >=x11-libs/gtk+-2:2 alsa? ( media-libs/alsa-lib ) pulseaudio? ( media-sound/pulseaudio ) nls? ( sys-devel/gettext ) virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/libxml2:= x11-libs/gtk+:2 alsa? ( media-libs/alsa-lib:= ) pulseaudio? ( media-sound/pulseaudio:= )
 DESCRIPTION=wavbreaker/wavmerge GTK+ utility to break or merge WAV files
-EAPI=4
+EAPI=7
 HOMEPAGE=http://wavbreaker.sourceforge.net
 IUSE=alsa nls oss pulseaudio
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
-RDEPEND=dev-libs/libxml2 >=x11-libs/gtk+-2:2 alsa? ( media-libs/alsa-lib ) pulseaudio? ( media-sound/pulseaudio )
+RDEPEND=dev-libs/libxml2:= x11-libs/gtk+:2 alsa? ( media-libs/alsa-lib:= ) pulseaudio? ( media-sound/pulseaudio:= )
 SLOT=0
 SRC_URI=mirror://sourceforge/wavbreaker/wavbreaker-0.11.tar.gz
-_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=dcf6367176912146fec29db649caa295
+_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=f67354edcae693b85e7451a0650bd984
diff --git a/metadata/md5-cache/media-sound/wavplay-2.0 b/metadata/md5-cache/media-sound/wavplay-2.0
index 01c7776801e9..091c1af3dc5a 100644
--- a/metadata/md5-cache/media-sound/wavplay-2.0
+++ b/metadata/md5-cache/media-sound/wavplay-2.0
@@ -1,11 +1,11 @@
+BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A command line player/recorder for wav files
-EAPI=4
+EAPI=7
 HOMEPAGE=https://sourceforge.net/projects/wavplay/
 KEYWORDS=~amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/wavplay/wavplay-2.0.tar.gz
 _eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
-_md5_=0dfcf51b1c212fb31df78641c564323d
+_md5_=fc0d39e6ff776cc7e3ac57ee79fd60ea
diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5
index a830a548cb02..8b5104561aff 100644
--- a/metadata/md5-cache/sci-biology/augustus-2.5.5
+++ b/metadata/md5-cache/sci-biology/augustus-2.5.5
@@ -1,11 +1,11 @@
-DEFINED_PHASES=compile install prepare
+DEFINED_PHASES=compile configure install
 DESCRIPTION=Eukaryotic gene predictor
-EAPI=4
+EAPI=7
 HOMEPAGE=http://augustus.gobics.de/
 IUSE=examples
 KEYWORDS=amd64 x86
 LICENSE=Artistic
 SLOT=0
 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=5660f556708e8c3b5d43c9ef832e66ec
+_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=80962b244c7531e320f35904727b5bd5
diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1
index a25c3f3552eb..e4d0e8b42fa6 100644
--- a/metadata/md5-cache/sci-biology/gibbs-3.1
+++ b/metadata/md5-cache/sci-biology/gibbs-3.1
@@ -1,7 +1,8 @@
-DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEFINED_PHASES=configure install postinst prepare
+DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences
-EAPI=4
+EAPI=7
 HOMEPAGE=http://bayesweb.wadsworth.org/gibbs/gibbs.html
 IUSE=mpi
 KEYWORDS=amd64 x86
@@ -9,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 SLOT=0
 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz
-_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=e28918ff8ca46c8b8254e4e36f8d0bcf
+_eclasses_=autotools	ea7865c8fba1ea8d3639f355fffe1a3c	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=8d48efee68d1063803fccbc4c73a0f5d
diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
index 6f39e8c26c79..de218b00d488 100644
--- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
+++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
@@ -1,10 +1,10 @@
-DEFINED_PHASES=compile install prepare unpack
+DEFINED_PHASES=compile configure install
 DESCRIPTION=A eukaryotic gene finding system from TIGR
-EAPI=4
+EAPI=7
 HOMEPAGE=http://www.cbcb.umd.edu/software/GlimmerHMM/
 KEYWORDS=amd64 x86
 LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=addae30e588a0c7a05baea53d553af0f
+_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=9fc33629a982f35b93c18da772894fdd
diff --git a/metadata/md5-cache/sci-biology/last-230 b/metadata/md5-cache/sci-biology/last-230
deleted file mode 100644
index 5c13aee8fe43..000000000000
--- a/metadata/md5-cache/sci-biology/last-230
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=app-arch/unzip
-DESCRIPTION=Genome-scale comparison of biological sequences
-EAPI=4
-HOMEPAGE=http://last.cbrc.jp/
-KEYWORDS=amd64 x86
-LICENSE=GPL-3
-SLOT=0
-SRC_URI=http://last.cbrc.jp/archive/last-230.zip
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=5da658e6779591b0d1b9ad3413a0e7b2
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1
deleted file mode 100644
index 57e1c5383c3e..000000000000
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 )
-DESCRIPTION=Bayesian Inference of Phylogeny
-EAPI=4
-HOMEPAGE=http://mrbayes.csit.fsu.edu/
-IUSE=debug mpi readline
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
-LICENSE=GPL-2
-RDEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 )
-SLOT=0
-SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=a082c9b1f1b5f9fa9b85e23eb7009a6d
diff --git a/metadata/md5-cache/sci-biology/plink-1.07-r1 b/metadata/md5-cache/sci-biology/plink-1.07-r1
deleted file mode 100644
index 4f8d0b921d8a..000000000000
--- a/metadata/md5-cache/sci-biology/plink-1.07-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=app-arch/unzip lapack? ( virtual/pkgconfig )
-DESCRIPTION=Whole genome association analysis toolset
-EAPI=4
-HOMEPAGE=http://pngu.mgh.harvard.edu/~purcell/plink/
-IUSE=lapack -webcheck R
-KEYWORDS=amd64 x86
-LICENSE=GPL-2
-RDEPEND=sys-libs/zlib lapack? ( virtual/lapack )
-SLOT=0
-SRC_URI=http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=b659cc5ab8af123ceaf15f1349214345
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.0.1 b/metadata/md5-cache/sci-biology/shrimp-2.0.1
deleted file mode 100644
index d86d2991f5ff..000000000000
--- a/metadata/md5-cache/sci-biology/shrimp-2.0.1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install prepare setup
-DEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs
-DESCRIPTION=SHort Read Mapping Package
-EAPI=4
-HOMEPAGE=http://compbio.cs.toronto.edu/shrimp/
-IUSE=custom-cflags
-KEYWORDS=amd64 x86
-LICENSE=shrimp
-RDEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs
-SLOT=0
-SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_0_1.src.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	8a43b9830f1e64a7a5fc0a276afa0275	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=33caa30e4cdcb3e86f4b1be8c6c30c46
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
index 56e0a3103673..a9f74c4889af 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
@@ -1,7 +1,7 @@
-DEFINED_PHASES=configure install prepare setup
+DEFINED_PHASES=configure install setup
 DEPEND=mpi? ( virtual/mpi )
 DESCRIPTION=Maximum likelihood analysis for nucleotide, amino acid, and two-state data
-EAPI=4
+EAPI=7
 HOMEPAGE=http://www.tree-puzzle.de
 IUSE=mpi
 KEYWORDS=~amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos
@@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi )
 RESTRICT=test
 SLOT=0
 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=6f933fde60eb23f0e50fbe5e137bbc7e
+_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c
+_md5_=8bd164fc83c9bb1d9a2e9559a47ff526
diff --git a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
deleted file mode 100644
index c130d2b73700..000000000000
--- a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install postinst prepare
-DEPEND=sys-libs/zlib doc? ( virtual/latex-base )
-DESCRIPTION=A sequence assembler for very short reads
-EAPI=4
-HOMEPAGE=https://www.ebi.ac.uk/~zerbino/velvet/
-IUSE=-doc
-KEYWORDS=amd64 x86
-LICENSE=GPL-2
-RDEPEND=sys-libs/zlib
-SLOT=0
-SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	686eaab303305a908fd57b2fd7617800	eutils	fcb2aa98e1948b835b5ae66ca52868c5	flag-o-matic	8a43b9830f1e64a7a5fc0a276afa0275	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	512eb3367f507ebaa1d1d43ab7d66e6c	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=81d9bd82f6f3df3f4b73fa7d65b5d95e