2018-05-21 17:30:40 UTC

30 files changed, 94 insertions, 127 deletions

diff --git a/metadata/md5-cache/dev-util/csup-20060318 b/metadata/md5-cache/dev-util/csup-20060318
deleted file mode 100644
index e7e56fc5117e..000000000000
--- a/metadata/md5-cache/dev-util/csup-20060318
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install unpack
-DEPEND=dev-libs/openssl sys-libs/zlib >=sys-devel/bison-2.1
-DESCRIPTION=A rewrite of CVSup
-EAPI=0
-HOMEPAGE=http://www.mu.org/~mux/csup.html
-KEYWORDS=~amd64 ~ppc ~x86 ~x86-fbsd
-LICENSE=BSD
-RDEPEND=dev-libs/openssl sys-libs/zlib !>=sys-freebsd/freebsd-ubin-6.2_beta1
-SLOT=0
-SRC_URI=http://mu.org/~mux/csup-snap-20060318.tgz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=6674b6dabebfdfaced8385b827df091a
diff --git a/metadata/md5-cache/mail-filter/policyd-weight-0.1.15.2-r1 b/metadata/md5-cache/mail-filter/policyd-weight-0.1.15.2-r1
deleted file mode 100644
index ff6cd77be30a..000000000000
--- a/metadata/md5-cache/mail-filter/policyd-weight-0.1.15.2-r1
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install setup
-DESCRIPTION=Weighted Policy daemon for Postfix
-EAPI=4
-HOMEPAGE=http://www.policyd-weight.org/
-KEYWORDS=~alpha amd64 x86
-LICENSE=GPL-2
-RDEPEND=virtual/perl-Sys-Syslog dev-perl/Net-DNS >=mail-mta/postfix-2.1
-SLOT=0
-SRC_URI=http://www.policyd-weight.org/releases/policyd-weight-0.1.15.2.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	user	8bc2845510e2109af75e3eeac607ec81	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=e9ede6f9416847ceec4bfafa4a7bf4e9
diff --git a/metadata/md5-cache/net-print/mtink-1.0.16-r1 b/metadata/md5-cache/net-print/mtink-1.0.16-r1
deleted file mode 100644
index d4a2117a6421..000000000000
--- a/metadata/md5-cache/net-print/mtink-1.0.16-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install postinst prepare unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libXpm x11-libs/libXt >=x11-libs/motif-2.3:0 ) cups? ( net-print/cups ) virtual/libusb:0
-DESCRIPTION=mtink is a status monitor and inkjet cartridge changer for some Epson printers
-EAPI=4
-HOMEPAGE=http://xwtools.automatix.de/
-IUSE=cups doc X
-KEYWORDS=amd64 ~ppc ~sparc x86
-LICENSE=GPL-2
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libXpm x11-libs/libXt >=x11-libs/motif-2.3:0 ) cups? ( net-print/cups ) virtual/libusb:0
-SLOT=0
-SRC_URI=http://xwtools.automatix.de/files/mtink-1.0.16.tar.gz
-_eclasses_=base	983774947da124fb7d542ce25a218bb1	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=9fda0504625a5cb2f4d69b4c5abfbb94
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index c84e5f5e6288..85cbd3251d6d 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -2,11 +2,11 @@ DEFINED_PHASES=compile install prepare test
 DEPEND=test? ( app-shells/tcsh )
 DESCRIPTION=FASTA is a DNA and Protein sequence alignment software package
 EAPI=5
-HOMEPAGE=http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml
+HOMEPAGE=https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml
 IUSE=debug cpu_flags_x86_sse2 test
 KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=fasta
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=7b46f81d2659e9120c49874e774b5ca0
+_md5_=4eed9011a4fc400bdf3adf77be6c8fe2
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
index 843dc56f0e06..1b6d7971fa45 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare
 DESCRIPTION=An HMM-based microbial gene finding system from TIGR
 EAPI=5
-HOMEPAGE=http://www.cbcb.umd.edu/software/glimmer/
+HOMEPAGE=https://ccb.jhu.edu/software/glimmer/index.shtml
 KEYWORDS=amd64 x86
 LICENSE=Artistic
 RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=fda3f095f34da47d12e170b3c40dfd67
+_md5_=94600a4de5a2dc02bc6652d958a2a034
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b
index e4223fafef93..f143f44f0657 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02b
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02b
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare
 DESCRIPTION=An HMM-based microbial gene finding system from TIGR
 EAPI=5
-HOMEPAGE=http://ccb.jhu.edu/software/glimmer
+HOMEPAGE=https://ccb.jhu.edu/software/glimmer/index.shtml
 KEYWORDS=~amd64 ~x86
 LICENSE=Artistic
 RDEPEND=app-shells/tcsh sci-biology/elph
 SLOT=0
-SRC_URI=http://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz
+SRC_URI=https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=1a77df881e0fba38094c344e97b529a5
+_md5_=6916d92c69198563f19b744f1e57dddc
diff --git a/metadata/md5-cache/sci-biology/mafft-7.050 b/metadata/md5-cache/sci-biology/mafft-7.050
index 43c9ceb9f18a..d291ae40be8d 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.050
+++ b/metadata/md5-cache/sci-biology/mafft-7.050
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare test
 DESCRIPTION=Multiple sequence alignments using a variety of algorithms
 EAPI=5
-HOMEPAGE=http://mafft.cbrc.jp/alignment/software/index.html
+HOMEPAGE=https://mafft.cbrc.jp/alignment/software/index.html
 IUSE=threads
 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=BSD
 SLOT=0
-SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz
+SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=10435da51da43a9bd92e9e337fb92445
+_md5_=3195e77c5c792018208b65f5dbeab567
diff --git a/metadata/md5-cache/sci-biology/mafft-7.215 b/metadata/md5-cache/sci-biology/mafft-7.215
index b3056161a6a3..ca1eceb71b49 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.215
+++ b/metadata/md5-cache/sci-biology/mafft-7.215
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare test
 DESCRIPTION=Multiple sequence alignments using a variety of algorithms
 EAPI=5
-HOMEPAGE=http://mafft.cbrc.jp/alignment/software/index.html
+HOMEPAGE=https://mafft.cbrc.jp/alignment/software/index.html
 IUSE=threads
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=BSD
 SLOT=0
-SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz
+SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=26a81f4b6b0ff69fbc3eba8869681491
+_md5_=7b8b136195c000efff0407f671d57f19
diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305
index 29a6530ae474..79313944ef91 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.305
+++ b/metadata/md5-cache/sci-biology/mafft-7.305
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare test
 DESCRIPTION=Multiple sequence alignments using a variety of algorithms
 EAPI=6
-HOMEPAGE=http://mafft.cbrc.jp/alignment/software/index.html
+HOMEPAGE=https://mafft.cbrc.jp/alignment/software/index.html
 IUSE=threads
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=BSD
 SLOT=0
-SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
+SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=4701ed0cbf5fff28c6de7c8b01e134af
+_md5_=920a37021a0b392bb7315b63cf3de39d
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index 4abca291abd7..391a0eb6ed12 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -2,12 +2,12 @@ DEFINED_PHASES=compile install prepare setup
 DEPEND=sci-biology/uchime mpi? ( virtual/mpi ) app-arch/unzip virtual/fortran
 DESCRIPTION=A suite of algorithms for ecological bioinformatics
 EAPI=5
-HOMEPAGE=http://www.mothur.org/
+HOMEPAGE=https://www.mothur.org/
 IUSE=mpi +readline
 KEYWORDS=amd64 x86
 LICENSE=GPL-3
 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 SLOT=0
-SRC_URI=http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
+SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=abcc03749068210ba5c44ba0b4a85e27
+_md5_=17f8b3c73710bbb746fc4cbfcf78b85d
diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
index 157ec8d46fbd..8f2eda2fc6ba 100644
--- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
+++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile install prepare setup
 DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
 DESCRIPTION=Development toolkit and applications for computational biology, including BLAST
 EAPI=5
-HOMEPAGE=http://www.ncbi.nlm.nih.gov/
+HOMEPAGE=https://www.ncbi.nlm.nih.gov/
 IUSE=doc static-libs X
 KEYWORDS=~alpha amd64 ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos
 LICENSE=public-domain
@@ -10,4 +10,4 @@ RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontc
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	prefix	e51c7882b7b721e54e684f7eb143cbfe	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=770169ddfbcde7c5fbe57bff9b10ca14
+_md5_=550e2f5b19e400b1ca82a7ba4f7bd44a
diff --git a/metadata/md5-cache/sci-biology/prosite-2017.02 b/metadata/md5-cache/sci-biology/prosite-2017.02
index 628597305894..ccabbc4a37bb 100644
--- a/metadata/md5-cache/sci-biology/prosite-2017.02
+++ b/metadata/md5-cache/sci-biology/prosite-2017.02
@@ -2,11 +2,11 @@ DEFINED_PHASES=compile install
 DEPEND=emboss? ( sci-biology/emboss )
 DESCRIPTION=A protein families and domains database
 EAPI=6
-HOMEPAGE=http://prosite.expasy.org/
+HOMEPAGE=https://prosite.expasy.org/
 IUSE=emboss minimal
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=swiss-prot
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=ftp://ftp.expasy.org/databases/prosite/old_releases/prosite2017_02.tar.bz2
-_md5_=390ff0ea61f44c9ea889684cad12b2b2
+_md5_=e37bd9f81e9458715d22a6138fb2029a
diff --git a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
index 3c4506c95ab9..3c289ffee6bc 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
+++ b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1
@@ -2,12 +2,12 @@ DEFINED_PHASES=compile install postinst prepare
 DEPEND=sys-libs/zlib doc? ( virtual/latex-base )
 DESCRIPTION=A sequence assembler for very short reads
 EAPI=4
-HOMEPAGE=http://www.ebi.ac.uk/~zerbino/velvet/
+HOMEPAGE=https://www.ebi.ac.uk/~zerbino/velvet/
 IUSE=-doc
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 RDEPEND=sys-libs/zlib
 SLOT=0
-SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz
+SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=89c605a4c416ef8207f85201e0494734
+_md5_=81d9bd82f6f3df3f4b73fa7d65b5d95e
diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10
index 49295e1e9891..b20c1caf8057 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.2.10
+++ b/metadata/md5-cache/sci-biology/velvet-1.2.10
@@ -2,11 +2,11 @@ DEFINED_PHASES=compile install prepare test
 DEPEND=doc? ( virtual/latex-base )
 DESCRIPTION=A sequence assembler for very short reads
 EAPI=5
-HOMEPAGE=http://www.ebi.ac.uk/~zerbino/velvet/
+HOMEPAGE=https://www.ebi.ac.uk/~zerbino/velvet/
 IUSE=doc openmp
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
+SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=b46e328f5bece618fd1f41cde92b68c0
+_md5_=420632435bf1efe77241192fff993a20
diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1
deleted file mode 100644
index 9d697077c990..000000000000
--- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install prepare
-DEPEND=x11-libs/libXt !x11-terms/terminator
-DESCRIPTION=The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG
-EAPI=4
-HOMEPAGE=https://sourceforge.net/projects/wgs-assembler/
-IUSE=static-libs
-KEYWORDS=amd64 x86
-LICENSE=GPL-2
-RDEPEND=x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4perl
-SLOT=0
-SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=6ebc94c9eb0083edd0308af8a336afe0
diff --git a/metadata/md5-cache/sci-electronics/spice-3.5.5-r1 b/metadata/md5-cache/sci-electronics/spice-3.5.5-r1
deleted file mode 100644
index e6a2655869d7..000000000000
--- a/metadata/md5-cache/sci-electronics/spice-3.5.5-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install unpack
-DEPEND=sys-libs/ncurses x11-libs/libXaw >=app-misc/editor-wrapper-3 x11-proto/xproto
-DESCRIPTION=general-purpose circuit simulation program
-EAPI=0
-HOMEPAGE=http://bwrc.eecs.berkeley.edu/Classes/IcBook/SPICE/
-KEYWORDS=amd64 ~ppc x86
-LICENSE=BSD
-RDEPEND=sys-libs/ncurses x11-libs/libXaw >=app-misc/editor-wrapper-3
-SLOT=0
-SRC_URI=http://www.ibiblio.org/pub/Linux/apps/circuits/spice3f5sfix.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=0dac62c7865cb27f54fa3305e63ccfe9
diff --git a/metadata/md5-cache/sci-geosciences/foxtrotgps-1.2.0 b/metadata/md5-cache/sci-geosciences/foxtrotgps-1.2.0
index 3af93339fd35..50af5bfbe2bc 100644
--- a/metadata/md5-cache/sci-geosciences/foxtrotgps-1.2.0
+++ b/metadata/md5-cache/sci-geosciences/foxtrotgps-1.2.0
@@ -2,12 +2,12 @@ DEFINED_PHASES=compile configure install postinst postrm preinst prepare unpack
 DEPEND=dev-libs/libxml2:2 gnome-base/gconf:2 gnome-base/libglade media-libs/libexif net-misc/curl >=sci-geosciences/gpsd-2.90 sys-apps/dbus x11-libs/gtk+:2 sys-devel/gettext >=app-portage/elt-patches-20170422 app-arch/xz-utils >=sys-apps/sed-4 dev-util/desktop-file-utils x11-misc/shared-mime-info
 DESCRIPTION=Easy to use, fast and lightweight mapping application (fork of tangogps)
 EAPI=5
-HOMEPAGE=http://www.foxtrotgps.org/
+HOMEPAGE=https://www.foxtrotgps.org/
 IUSE=debug
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 RDEPEND=dev-libs/libxml2:2 gnome-base/gconf:2 gnome-base/libglade media-libs/libexif net-misc/curl >=sci-geosciences/gpsd-2.90 sys-apps/dbus x11-libs/gtk+:2
 SLOT=0
-SRC_URI=http://www.foxtrotgps.org/releases/foxtrotgps-1.2.0.tar.xz
+SRC_URI=https://www.foxtrotgps.org/releases/foxtrotgps-1.2.0.tar.xz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	gnome.org	5e4cc5af3f1b17bdee155bf02e8c2df4	gnome2	6e4acb9c9da2cfa25f2dfedb93bb4a43	gnome2-utils	4d211d7614f303710fca59db6ec12c88	libtool	0081a71a261724730ec4c248494f044d	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72	xdg	6cd76cc914c1a759dee032778487b57f	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=f099a0dce954af5bc6c8efe17d943633
+_md5_=cfc2f519fb7c09ebea65104a2497a26a
diff --git a/metadata/md5-cache/sci-geosciences/gshhs-1.13 b/metadata/md5-cache/sci-geosciences/gshhs-1.13
index a2ea0647b785..624030371b2b 100644
--- a/metadata/md5-cache/sci-geosciences/gshhs-1.13
+++ b/metadata/md5-cache/sci-geosciences/gshhs-1.13
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile install
 DEPEND=sci-libs/netcdf sci-libs/gdal data? ( sci-geosciences/gshhs-data ) virtual/pkgconfig app-arch/unzip
 DESCRIPTION=Global Self-consistent, Hierarchical, High-resolution Shoreline programs
 EAPI=5
-HOMEPAGE=http://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html
+HOMEPAGE=https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html
 IUSE=+data
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-2
@@ -10,4 +10,4 @@ RDEPEND=sci-libs/netcdf sci-libs/gdal data? ( sci-geosciences/gshhs-data )
 SLOT=0
 SRC_URI=ftp://ftp.soest.hawaii.edu/pwessel/gshhs/gshhs_1.13_src.zip
 _eclasses_=multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	fa02994d0beba88681127d93da4411ec
-_md5_=2df28ad78256fc0063a56f14588c8a99
+_md5_=c7553b20fda19a4f688bfbd8a2e58fe4
diff --git a/metadata/md5-cache/sci-geosciences/gshhs-data-2.2.0 b/metadata/md5-cache/sci-geosciences/gshhs-data-2.2.0
index 3e39281812be..81064a489ff4 100644
--- a/metadata/md5-cache/sci-geosciences/gshhs-data-2.2.0
+++ b/metadata/md5-cache/sci-geosciences/gshhs-data-2.2.0
@@ -1,9 +1,9 @@
 DEFINED_PHASES=install
 DESCRIPTION=Global Self-consistent, Hierarchical, High-resolution Shoreline programs data
 EAPI=5
-HOMEPAGE=http://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html
+HOMEPAGE=https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=http://www.ngdc.noaa.gov/mgg/shorelines/data/gshhs/version2.2.0/gshhs+wdbii_2.2.0.zip
-_md5_=ef8f50fc02521188f8e42338c56bf91c
+SRC_URI=https://www.ngdc.noaa.gov/mgg/shorelines/data/gshhg/oldversions/version2.2.0/gshhs+wdbii_2.2.0.zip
+_md5_=136bc7eefad0e41ad53b9b4e7d816a25
diff --git a/metadata/md5-cache/sci-geosciences/josm-10966 b/metadata/md5-cache/sci-geosciences/josm-10966
index e58bdb3f3f2b..00422606dcbf 100644
--- a/metadata/md5-cache/sci-geosciences/josm-10966
+++ b/metadata/md5-cache/sci-geosciences/josm-10966
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install preinst prepare setup
 DEPEND=>=virtual/jdk-1.8 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 >=dev-java/javatoolkit-0.3.0-r2
 DESCRIPTION=Java-based editor for the OpenStreetMap project
 EAPI=5
-HOMEPAGE=http://josm.openstreetmap.de/
+HOMEPAGE=https://josm.openstreetmap.de/
 IUSE=elibc_FreeBSD elibc_FreeBSD
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
@@ -10,4 +10,4 @@ RDEPEND=>=virtual/jre-1.8 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=mirror://gentoo/josm-10966.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72
-_md5_=8519ff72a062323f49069d6fa619e65b
+_md5_=4b2862f7563d00f2a29a3bfe9671fb50
diff --git a/metadata/md5-cache/sci-geosciences/josm-99999 b/metadata/md5-cache/sci-geosciences/josm-99999
index 032368ce7663..a017375d1e51 100644
--- a/metadata/md5-cache/sci-geosciences/josm-99999
+++ b/metadata/md5-cache/sci-geosciences/josm-99999
@@ -2,10 +2,10 @@ DEFINED_PHASES=compile configure install preinst prepare setup unpack
 DEPEND=>=virtual/jdk-1.8 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 >=dev-java/javatoolkit-0.3.0-r2 || ( dev-vcs/subversion[http] dev-vcs/subversion[webdav-neon] dev-vcs/subversion[webdav-serf] ) net-misc/rsync
 DESCRIPTION=Java-based editor for the OpenStreetMap project
 EAPI=5
-HOMEPAGE=http://josm.openstreetmap.de/
+HOMEPAGE=https://josm.openstreetmap.de/
 IUSE=elibc_FreeBSD elibc_FreeBSD
 LICENSE=GPL-2
 RDEPEND=>=virtual/jre-1.8 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	subversion	a5d5826a85609611f098c0553eb24cc1	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72
-_md5_=a167ab9ac34c9275d349cb2b9d870bf4
+_md5_=55fbe3bbfe418bc9861b79d908488349
diff --git a/metadata/md5-cache/sci-geosciences/mapnik-world-boundaries-20090514 b/metadata/md5-cache/sci-geosciences/mapnik-world-boundaries-20090514
index 35dfd3c7120e..11462187e50d 100644
--- a/metadata/md5-cache/sci-geosciences/mapnik-world-boundaries-20090514
+++ b/metadata/md5-cache/sci-geosciences/mapnik-world-boundaries-20090514
@@ -2,9 +2,9 @@ DEFINED_PHASES=install prepare
 DEPEND=app-arch/unzip
 DESCRIPTION=Mapnik World Boundaries
 EAPI=6
-HOMEPAGE=http://www.openstreetmap.org/
+HOMEPAGE=https://www.openstreetmap.org/
 KEYWORDS=amd64 ~ppc x86
 LICENSE=CC-BY-SA-2.0
 SLOT=0
 SRC_URI=mirror://gentoo/world_boundaries-spherical-20090331.tgz mirror://gentoo/processed_p-20090514.zip
-_md5_=581e35408dfafe76a9051526bb3810f0
+_md5_=d8d545f39f98686a029cdd45358f327e
diff --git a/metadata/md5-cache/sci-geosciences/opencpn-4.8.0-r1 b/metadata/md5-cache/sci-geosciences/opencpn-4.8.0-r1
index cc52e41c3b93..3a81d9971249 100644
--- a/metadata/md5-cache/sci-geosciences/opencpn-4.8.0-r1
+++ b/metadata/md5-cache/sci-geosciences/opencpn-4.8.0-r1
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install postinst prepare test
 DEPEND=app-arch/bzip2 dev-libs/tinyxml media-libs/freetype:2 media-libs/portaudio sys-libs/zlib opengl? ( virtual/opengl ) x11-libs/gtk+:2 x11-libs/wxGTK:3.0[X] gps? ( sci-geosciences/gpsd ) !sci-geosciences/opencpn-plugin-wmm sys-devel/gettext sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=a free, open source software for marine navigation
 EAPI=5
-HOMEPAGE=http://opencpn.org/
+HOMEPAGE=https://opencpn.org/
 IUSE=doc gps opengl
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2+
@@ -10,4 +10,4 @@ RDEPEND=app-arch/bzip2 dev-libs/tinyxml media-libs/freetype:2 media-libs/portaud
 SLOT=0
 SRC_URI=https://github.com/OpenCPN/OpenCPN/archive/v4.8.0.tar.gz -> opencpn-4.8.0.tar.gz doc? ( https://launchpad.net/~opencpn/+archive/ubuntu/opencpn/+files/opencpn-doc_4.1.1329.1.orig.tar.xz )
 _eclasses_=cmake-utils	49cd471f02483798c5068698836b7429	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	eapi7-ver	d97a56a62c7df8614afddcb25f5ff00f	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	d2e7e7d290428bb25c56dcf2502badc1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=4d8c9f64147df6607f5a037d9fabc086
+_md5_=a0595d33bb3db56d0e3328c2fa5b648c
diff --git a/metadata/md5-cache/sci-geosciences/opencpn-4.8.2 b/metadata/md5-cache/sci-geosciences/opencpn-4.8.2
index 724169e425e5..c03fa693d170 100644
--- a/metadata/md5-cache/sci-geosciences/opencpn-4.8.2
+++ b/metadata/md5-cache/sci-geosciences/opencpn-4.8.2
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install postinst prepare test
 DEPEND=app-arch/bzip2 dev-libs/tinyxml media-libs/freetype:2 media-libs/portaudio sys-libs/zlib opengl? ( virtual/opengl ) x11-libs/gtk+:2 x11-libs/wxGTK:3.0[X] gps? ( sci-geosciences/gpsd ) !sci-geosciences/opencpn-plugin-wmm sys-devel/gettext sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=a free, open source software for marine navigation
 EAPI=5
-HOMEPAGE=http://opencpn.org/
+HOMEPAGE=https://opencpn.org/
 IUSE=doc gps opengl
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2+
@@ -10,4 +10,4 @@ RDEPEND=app-arch/bzip2 dev-libs/tinyxml media-libs/freetype:2 media-libs/portaud
 SLOT=0
 SRC_URI=https://github.com/OpenCPN/OpenCPN/archive/v4.8.2.tar.gz -> opencpn-4.8.2.tar.gz doc? ( https://launchpad.net/~opencpn/+archive/ubuntu/opencpn/+files/opencpn-doc_4.1.1329.1.orig.tar.xz )
 _eclasses_=cmake-utils	49cd471f02483798c5068698836b7429	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	eapi7-ver	d97a56a62c7df8614afddcb25f5ff00f	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	d2e7e7d290428bb25c56dcf2502badc1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=c14763f4f67f76a51f4cee7ba8ae96d7
+_md5_=a457b13748e940f80f7cbdc74e224157
diff --git a/metadata/md5-cache/sci-libs/dcmtk-3.6.0 b/metadata/md5-cache/sci-libs/dcmtk-3.6.0
index b1f971081654..c9561b74e66c 100644
--- a/metadata/md5-cache/sci-libs/dcmtk-3.6.0
+++ b/metadata/md5-cache/sci-libs/dcmtk-3.6.0
@@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install prepare test
 DEPEND=virtual/jpeg:0 png? ( media-libs/libpng:* ) ssl? ( dev-libs/openssl:0 ) tcpd? ( sys-apps/tcp-wrappers ) tiff? ( media-libs/tiff:0 ) xml? ( dev-libs/libxml2:2 ) zlib? ( sys-libs/zlib ) doc? ( app-doc/doxygen ) media-gfx/graphviz sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=The DICOM Toolkit
 EAPI=5
-HOMEPAGE=http://dicom.offis.de/dcmtk.php.en
+HOMEPAGE=https://dicom.offis.de/dcmtk.php.en
 IUSE=doc png ssl tcpd tiff +threads xml zlib
 KEYWORDS=~amd64 ~arm ~x86
 LICENSE=OFFIS
@@ -10,4 +10,4 @@ RDEPEND=virtual/jpeg:0 png? ( media-libs/libpng:* ) ssl? ( dev-libs/openssl:0 )
 SLOT=0
 SRC_URI=ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/dcmtk360/dcmtk-3.6.0.tar.gz
 _eclasses_=cmake-utils	49cd471f02483798c5068698836b7429	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	eapi7-ver	d97a56a62c7df8614afddcb25f5ff00f	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	d2e7e7d290428bb25c56dcf2502badc1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=cff4b6f05cc85a07251117a0d89df9d0
+_md5_=405149312c5c1934b3050cad894773f3
diff --git a/metadata/md5-cache/sci-libs/libdap-3.18.1 b/metadata/md5-cache/sci-libs/libdap-3.18.1
index b504074e8ab0..054c03f95ae2 100644
--- a/metadata/md5-cache/sci-libs/libdap-3.18.1
+++ b/metadata/md5-cache/sci-libs/libdap-3.18.1
@@ -2,12 +2,12 @@ DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/libxml2:2 net-misc/curl sys-libs/zlib virtual/pkgconfig sys-devel/flex test? ( dev-util/cppunit ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Implementation of a C++ SDK for DAP 2.0 and 3.2
 EAPI=6
-HOMEPAGE=http://opendap.org/
+HOMEPAGE=https://www.opendap.org
 IUSE=static-libs test
 KEYWORDS=amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux
 LICENSE=|| ( LGPL-2.1 URI )
 RDEPEND=dev-libs/libxml2:2 net-misc/curl sys-libs/zlib
 SLOT=0
-SRC_URI=http://www.opendap.org/pub/source/libdap-3.18.1.tar.gz
+SRC_URI=https://www.opendap.org/pub/source/libdap-3.18.1.tar.gz
 _eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	5128c4729303400bd8d4b0b966530955	libtool	0081a71a261724730ec4c248494f044d	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=5f7cb7375e09ac4bcb3507aa3b57c29f
+_md5_=0b899c3b389c5f417afd7031b5a40ba0
diff --git a/metadata/md5-cache/sys-auth/openpam-20140912-r1 b/metadata/md5-cache/sys-auth/openpam-20140912-r1
deleted file mode 100644
index c573d9c5267b..000000000000
--- a/metadata/md5-cache/sys-auth/openpam-20140912-r1
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=sys-devel/make dev-lang/perl >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=Open source PAM library
-EAPI=5
-HOMEPAGE=https://www.openpam.org/
-IUSE=debug abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64
-KEYWORDS=~amd64-fbsd ~x86-fbsd
-LICENSE=BSD
-PDEPEND=sys-auth/pambase
-RDEPEND=!sys-libs/pam
-SLOT=0
-SRC_URI=mirror://sourceforge/openpam/openpam-20140912.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	autotools-multilib	f4848d9634439c7203cb7dd3b9650fff	autotools-utils	5a4611dfba155b1659528663fad4cd5e	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	libtool	0081a71a261724730ec4c248494f044d	ltprune	607e058da37aa6dabfa408b7d61da72e	multibuild	35719a9cd25ec71ee49c966f6868454c	multilib	97f470f374f2e94ccab04a2fb21d811e	multilib-build	45f0e78dba7de5c77988265229b4402a	multilib-minimal	bfa1226d0f1fa0093d10b84acd029633	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=d1482efceade5eba9d5586639382fb12
diff --git a/metadata/md5-cache/sys-kernel/ck-sources-4.14.42 b/metadata/md5-cache/sys-kernel/ck-sources-4.14.42
new file mode 100644
index 000000000000..d3d58015dd40
--- /dev/null
+++ b/metadata/md5-cache/sys-kernel/ck-sources-4.14.42
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile install postinst postrm preinst prepare setup test unpack
+DEPEND=deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) !build? ( sys-apps/sed >=sys-devel/binutils-2.11.90.0.31 ) deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) )
+DESCRIPTION=Con Kolivas' high performance patchset and Gentoo's genpatches for Linux 4.14
+EAPI=6
+HOMEPAGE=https://www.kernel.org/ https://www.gentoo.org/ https://dev.gentoo.org/~mpagano/genpatches/ http://kernel.kolivas.org/ http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags
+IUSE=experimental symlink build deblob
+KEYWORDS=~amd64 ~x86
+LICENSE=GPL-2 !deblob? ( linux-firmware )
+RDEPEND=!build? ( >=sys-libs/ncurses-5.2 sys-devel/make dev-lang/perl sys-devel/bc virtual/libelf )
+RESTRICT=binchecks strip
+SLOT=4.14.42
+SRC_URI=mirror://kernel/linux/kernel/v4.x/linux-4.14.tar.xz deblob? ( http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.14-gnu/deblob-4.14 http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.14-gnu/deblob-check -> deblob-check-4.14 ) mirror://gentoo/genpatches-4.14-47.base.tar.xz mirror://gentoo/genpatches-4.14-47.extras.tar.xz experimental? ( mirror://gentoo/genpatches-4.14-47.experimental.tar.xz ) http://ck.kolivas.org/patches/4.0/4.14/4.14-ck1/patch-4.14-ck1.xz https://github.com/ckolivas/linux/commit/25849740d77dfc089fdbfb53623e50d38a972aff.patch -> ck-sources-4.14-blkio-fix.patch
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	kernel-2	6e37f651408d80af441518a0264b59c7	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	6faea633ae2f79f6d55dcfd431b79fbf	python-utils-r1	3b2e27bcad216823f5a67d01d28b53a4	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72
+_md5_=443dabd266659ca562d44427e5e2bd48
diff --git a/metadata/md5-cache/sys-kernel/ck-sources-4.16.10 b/metadata/md5-cache/sys-kernel/ck-sources-4.16.10
new file mode 100644
index 000000000000..c3aef2bbed2d
--- /dev/null
+++ b/metadata/md5-cache/sys-kernel/ck-sources-4.16.10
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile install postinst postrm preinst prepare setup test unpack
+DEPEND=deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) !build? ( sys-apps/sed >=sys-devel/binutils-2.11.90.0.31 ) deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) )
+DESCRIPTION=Con Kolivas' high performance patchset and Gentoo's genpatches for Linux 4.16
+EAPI=6
+HOMEPAGE=https://www.kernel.org/ https://www.gentoo.org/ https://dev.gentoo.org/~mpagano/genpatches/ http://kernel.kolivas.org/ http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags
+IUSE=experimental symlink build deblob
+KEYWORDS=~amd64 ~x86
+LICENSE=GPL-2 !deblob? ( linux-firmware )
+RDEPEND=!build? ( >=sys-libs/ncurses-5.2 sys-devel/make dev-lang/perl sys-devel/bc virtual/libelf )
+RESTRICT=binchecks strip
+SLOT=4.16.10
+SRC_URI=mirror://kernel/linux/kernel/v4.x/linux-4.16.tar.xz deblob? ( http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.16-gnu/deblob-4.16 http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.16-gnu/deblob-check -> deblob-check-4.16 ) mirror://gentoo/genpatches-4.16-11.base.tar.xz mirror://gentoo/genpatches-4.16-11.extras.tar.xz experimental? ( mirror://gentoo/genpatches-4.16-11.experimental.tar.xz ) http://ck.kolivas.org/patches/4.0/4.16/4.16-ck1/patch-4.16-ck1.xz
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	kernel-2	6e37f651408d80af441518a0264b59c7	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	6faea633ae2f79f6d55dcfd431b79fbf	python-utils-r1	3b2e27bcad216823f5a67d01d28b53a4	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72
+_md5_=3a56b59afa8e1d4d7ece40c88820875e
diff --git a/metadata/md5-cache/sys-kernel/ck-sources-4.9.101 b/metadata/md5-cache/sys-kernel/ck-sources-4.9.101
new file mode 100644
index 000000000000..ee04d1b3e507
--- /dev/null
+++ b/metadata/md5-cache/sys-kernel/ck-sources-4.9.101
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile install postinst postrm preinst prepare setup test unpack
+DEPEND=deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) !build? ( sys-apps/sed >=sys-devel/binutils-2.11.90.0.31 ) deblob? ( || ( >=dev-lang/python-2.7.5-r2:2.7 ) )
+DESCRIPTION=Con Kolivas' high performance patchset and Gentoo's genpatches for Linux 4.9
+EAPI=6
+HOMEPAGE=https://www.kernel.org/ https://www.gentoo.org/ https://dev.gentoo.org/~mpagano/genpatches/ http://kernel.kolivas.org/ http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags
+IUSE=symlink build deblob
+KEYWORDS=~amd64 ~x86
+LICENSE=GPL-2 !deblob? ( linux-firmware )
+RDEPEND=!build? ( >=sys-libs/ncurses-5.2 sys-devel/make dev-lang/perl sys-devel/bc virtual/libelf )
+RESTRICT=binchecks strip
+SLOT=4.9.101
+SRC_URI=mirror://kernel/linux/kernel/v4.x/linux-4.9.tar.xz deblob? ( http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.9-gnu/deblob-4.9 http://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/4.9-gnu/deblob-check -> deblob-check-4.9 ) mirror://gentoo/genpatches-4.9-104.base.tar.xz mirror://gentoo/genpatches-4.9-104.extras.tar.xz mirror://gentoo/genpatches-4.9-104.experimental.tar.xz http://ck.kolivas.org/patches/4.0/4.9/4.9-ck1/patch-4.9-ck1.xz https://github.com/ckolivas/linux/commit/7de569950716147ed436b27936628ee3ab5b45cc.patch -> ck-sources-4.9-freezer-fix.patch
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	9a5f039771f143195164a15a4faa41a1	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	kernel-2	6e37f651408d80af441518a0264b59c7	ltprune	607e058da37aa6dabfa408b7d61da72e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	6faea633ae2f79f6d55dcfd431b79fbf	python-utils-r1	3b2e27bcad216823f5a67d01d28b53a4	toolchain-funcs	fa02994d0beba88681127d93da4411ec	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	26ca8a8bd95d6a74122c08ba98a4ee72
+_md5_=cc552c9181baa08931d66f2edbb5c2e4