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| author |   Kent Fredric <kentnl@gentoo.org> | 2017-07-18 11:55:34 +1200 |
|---|---|---|
| committer | Kent Fredric <kentnl@gentoo.org> | 2017-07-18 16:38:03 +1200 |
| commit | c16e51d89ade3ee46c780185a2aad20555ab154b (patch) | |
| tree | 85a7c8c929f00e18b055f9adcecc3b9081a65028 /sci-biology/bioperl-db/files | |
| parent | sci-biology/bioperl-db: Fix broken test dependencies (diff) | |
| download | gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.tar.gz gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.tar.bz2 gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.zip | |
sci-biology/bioperl-db: EAPI6/-R1 Bump
- Test infa overhauled slightly
- EAPI6ified
- More test changes planned
- -r1 bump mostly for double-safety around EAPI6 changes
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Diffstat (limited to 'sci-biology/bioperl-db/files')
| -rw-r--r-- | sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch b/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch new file mode 100644 index 000000000000..9a2d5e7bb0b6 --- /dev/null +++ b/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch @@ -0,0 +1,57 @@ +From a63725a70ab6d5cbf419d1896007b49609ac5cfa Mon Sep 17 00:00:00 2001 +From: Kent Fredric <kentfredric@gmail.com> +Date: Tue, 18 Jul 2017 11:06:05 +1200 +Subject: [PATCH] Add env db test controls + +--- + Build.PL | 10 +++++----- + t/DBTestHarness.pm | 11 ++++++----- + 2 files changed, 11 insertions(+), 10 deletions(-) + +diff --git a/Build.PL b/Build.PL +index ecc402e..4d55f3a 100755 +--- a/Build.PL ++++ b/Build.PL +@@ -97,11 +97,11 @@ sub biosql_conf { + or die "Error: could not write to config file '$config_file'\n"; + + my %config = (driver => $drivers[0], +- host => '127.0.0.1', +- user => 'root', +- port => 3306, +- password => '', +- dbname => 'bioseqdb', ++ host => $ENV{GENTOO_DB_TEST_HOST}, ++ user => $ENV{GENTOO_DB_TEST_USER}, ++ port => $ENV{GENTOO_DB_TEST_PORT}, ++ password => $ENV{GENTOO_DB_TEST_PASSWORD}, ++ dbname => $ENV{GENTOO_DB_TEST_DB}, + database => 'biosql', + schema_sql => '../biosql-schema/sql/biosqldb-mysql.sql'); + +diff --git a/t/DBTestHarness.pm b/t/DBTestHarness.pm +index b660429..bd0b3b7 100755 +--- a/t/DBTestHarness.pm ++++ b/t/DBTestHarness.pm +@@ -47,12 +47,13 @@ my $counter=0; + # Default settings as a hash + my $dflt = { + 'driver' => 'mysql', +- 'host' => 'localhost', +- 'user' => 'root', +- 'port' => undef, +- 'password' => '', ++ 'host' => $ENV{GENTOO_DB_HOST}, ++ 'user' => $ENV{GENTOO_DB_TEST_USER}, ++ 'port' => ( defined $ENV{GENTOO_DB_TEST_PORT} and length $ENV{GENTOO_DB_TEST_PORT} ) ? ++ $ENV{GENTOO_DB_TEST_PORT} : undef, ++ 'password' => $ENV{GENTOO_DB_TEST_PASSWORD}, + 'schema_sql' => ['../biosql-schema/sql/biosqldb-mysql.sql'], +- 'database' => 'biosql', ++ 'database' => $ENV{GENTOO_DB_TEST_DB}, + 'module' => 'Bio::DB::BioSQL::DBAdaptor' + }; + +-- +2.13.1 + |