summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorKent Fredric <kentnl@gentoo.org>2017-09-26 02:24:20 +1300
committerKent Fredric <kentnl@gentoo.org>2017-09-26 18:07:24 +1300
commitfe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88 (patch)
treee12ff2ebbeb9b47e2858afa7ca7e135c56fe4a57 /sci-biology/hmmer
parentsci-biology/hmmer: de-stabilize (diff)
downloadgentoo-fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88.tar.gz
gentoo-fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88.tar.bz2
gentoo-fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88.zip
sci-biology/hmmer: Cleanup broken versions re bug #421799
Closes: https://bugs.gentoo.org/421799 Package-Manager: Portage-2.3.8, Repoman-2.3.3
Diffstat (limited to 'sci-biology/hmmer')
-rw-r--r--sci-biology/hmmer/hmmer-2.3.2-r3.ebuild52
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild
deleted file mode 100644
index 0d1a357d4d03..000000000000
--- a/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Sequence analysis using profile hidden Markov models"
-LICENSE="GPL-2"
-HOMEPAGE="http://hmmer.janelia.org/"
-SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
-
-SLOT="0"
-IUSE="threads test"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-src_configure() {
- econf \
- --host=${CHOST} \
- --prefix="${D}"/usr \
- --exec_prefix="${D}"/usr \
- --mandir="${D}"/usr/share/man \
- --enable-lfs \
- $(use_enable threads)
-}
-
-src_install() {
- emake DESTDIR="${D}" install
-
- pushd src >/dev/null || die
- dolib libhmmer.a
- insinto /usr/include/hmmer
- doins *.h
- popd >/dev/null || die
-
- pushd squid >/dev/null || die
- dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
- dolib libsquid.a
- insinto /usr/include/hmmer
- doins *.h
- popd >/dev/null || die
-
- dodoc NOTES
- newdoc 00README README
- insinto /usr/share/doc/${PF}
- doins Userguide.pdf
-}
-
-src_test() {
- emake check
-}