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| author |   David Seifert <soap@gentoo.org> | 2017-09-17 12:55:14 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-09-17 12:55:14 +0200 |
| commit | d18c0d93f7ff2d46209b941999530a0eda735cd9 (patch) | |
| tree | 5a4fc765fae094e1e2532367304bb06b6f65af24 /sci-biology/pysam | |
| parent | sci-biology/pysam: Version bump to 0.12.0.1 (diff) | |
| download | gentoo-d18c0d93f7ff2d46209b941999530a0eda735cd9.tar.gz gentoo-d18c0d93f7ff2d46209b941999530a0eda735cd9.tar.bz2 gentoo-d18c0d93f7ff2d46209b941999530a0eda735cd9.zip | |
sci-biology/pysam: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Diffstat (limited to 'sci-biology/pysam')
| -rw-r--r-- | sci-biology/pysam/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/pysam/pysam-0.12.ebuild | 47 |
2 files changed, 0 insertions, 48 deletions
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index b01df416d508..700b3a8a08e1 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,2 +1 @@ DIST pysam-0.12.0.1.tar.gz 2672020 SHA256 04837bf0b1313e57d50076f228463262b9982c410b973eb184c033528f83d523 SHA512 31460ca98ad2ac5489905ffce76bfbb5bf4a295159f3cc8e088c78dcfbfc34b30d6f7871fd1454de01da98f82b7438ac2aca678a771d7b97ae0029a418f29f1d WHIRLPOOL 5bd9f29e7458cac3839aaa9703d4c5740b1268644947f31ce7d3ddd12e0ec1948611ca5228323ce9b3b8fa5a5e0623c6fa0a0e2ce7f197fdb81aa5465915af36 -DIST pysam-0.12.tar.gz 2537142 SHA256 33922cb3277ed9a63457c1b6a9dcad2774a217ababcc97a854435be87ba80488 SHA512 095a47cd7258ef093a172445c425f382996da886e44e1beb81ecdec2325024e099d14bee6fcd928c4449099f51ad92b6d7ceb464815c463ab4478f162a40f21e WHIRLPOOL 2331e24d817cd3e7372df8e115498456e685ac426796b29c6d5a28edbaab2321f7efc9db0f14a000750fcd9e30391c02b81e439a07596813bdf7fc6c6e1a3ae3 diff --git a/sci-biology/pysam/pysam-0.12.ebuild b/sci-biology/pysam/pysam-0.12.ebuild deleted file mode 100644 index 1f4f58fdfe29..000000000000 --- a/sci-biology/pysam/pysam-0.12.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) - -inherit distutils-r1 - -DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" -HOMEPAGE=" - https://github.com/pysam-developers/pysam - https://pypi.python.org/pypi/pysam" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -RDEPEND="=sci-libs/htslib-1.5*:=" -DEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}]" - -PATCHES=( "${FILESDIR}"/${PN}-0.12-fix-buildsystem.patch ) - -python_prepare_all() { - # unbundle htslib - export HTSLIB_MODE="external" - export HTSLIB_INCLUDE_DIR="${EPREFIX}"/usr/include - export HTSLIB_LIBRARY_DIR="${EPREFIX}"/usr/$(get_libdir) - rm -r htslib || die - - # prevent setup.py from adding RPATHs - sed -e "/ext\.extra_link_args += \['-Wl,-rpath,\$ORIGIN'\]/d" \ - -i cy_build.py || die - sed -e '/runtime_library_dirs=htslib_library_dirs/d' \ - -i setup.py || die - - distutils-r1_python_prepare_all -} - -src_compile() { - # TODO - # empty compile, as the build system runs the whole build again in install - : -} |