diff options
| author |   Andreas Sturmlechner <asturm@gentoo.org> | 2021-03-07 17:51:50 +0100 |
|---|---|---|
| committer | Andreas Sturmlechner <asturm@gentoo.org> | 2021-03-07 19:53:20 +0100 |
| commit | 132247f2a76e16d49fa38bfc3933ca61f4db78e6 (patch) | |
| tree | 4ccfafdcd2ec473e17d027ffd05200c23a9e2def /sci-biology | |
| parent | sci-biology/fasttree: Drop 2.1.8 (diff) | |
| download | gentoo-132247f2a76e16d49fa38bfc3933ca61f4db78e6.tar.gz gentoo-132247f2a76e16d49fa38bfc3933ca61f4db78e6.tar.bz2 gentoo-132247f2a76e16d49fa38bfc3933ca61f4db78e6.zip | |
sci-biology/uchime: EAPI-7 bump, use cmake.eclass, https, fix HOMEPAGE
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/uchime/files/CMakeLists.txt | 7 | ||||
| -rw-r--r-- | sci-biology/uchime/uchime-4.2.40.ebuild | 16 |
2 files changed, 11 insertions, 12 deletions
diff --git a/sci-biology/uchime/files/CMakeLists.txt b/sci-biology/uchime/files/CMakeLists.txt index 54b0a3ba0d30..a9319293e10b 100644 --- a/sci-biology/uchime/files/CMakeLists.txt +++ b/sci-biology/uchime/files/CMakeLists.txt @@ -1,11 +1,12 @@ -cmake_minimum_required(VERSION 2.6) +cmake_minimum_required(VERSION 2.8.12) project(UCHIME) +include(GNUInstallDirs) + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_FILE_OFFSET_BITS=64 -DUCHIMES=1") # Simply copy the source files from the mk script add_executable(uchime addtargets2.cpp alignchime.cpp alignchimel.cpp alnparams.cpp alpha.cpp alpha2.cpp fractid.cpp getparents.cpp globalalign2.cpp make3way.cpp mx.cpp myutils.cpp path.cpp searchchime.cpp seqdb.cpp setnucmx.cpp sfasta.cpp tracebackbit.cpp uchime_main.cpp usort.cpp viterbifast.cpp writechhit.cpp) -INSTALL(TARGETS uchime - DESTINATION bin) +INSTALL(TARGETS uchime DESTINATION ${CMAKE_INSTALL_BINDIR}) diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild index dd2201547ae0..75827ab3a304 100644 --- a/sci-biology/uchime/uchime-4.2.40.ebuild +++ b/sci-biology/uchime/uchime-4.2.40.ebuild @@ -1,18 +1,17 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 - -inherit cmake-utils +EAPI=7 MY_P="${PN}${PV}_src" +inherit cmake DESCRIPTION="Fast, accurate chimera detection" -HOMEPAGE="http://www.drive5.com/uchime/" -SRC_URI="http://drive5.com/${PN}/${MY_P}.tar.gz" +HOMEPAGE="https://www.drive5.com/usearch/manual/uchime_algo.html" +SRC_URI="https://www.drive5.com/${PN}/${MY_P}.tar.gz" -SLOT="0" LICENSE="public-domain" +SLOT="0" KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" IUSE="debug" @@ -20,6 +19,5 @@ S="${WORKDIR}"/${MY_P} src_prepare() { cp "${FILESDIR}"/CMakeLists.txt . || die - - cmake-utils_src_prepare + cmake_src_prepare } |