proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

4 files changed, 742 insertions, 0 deletions

diff --git a/sci-chemistry/azara/files/2.8-64bit.patch b/sci-chemistry/azara/files/2.8-64bit.patch
new file mode 100644
index 000000000000..c65e075c1d30
--- /dev/null
+++ b/sci-chemistry/azara/files/2.8-64bit.patch
@@ -0,0 +1,85 @@
+diff --git a/global/par.c b/global/par.c
+index ac87c88..fecfe35 100644
+--- a/global/par.c
++++ b/global/par.c
+@@ -562,9 +562,9 @@ static Status get_varian_header(FILE *fp, String error_msg)
+     return  OK;
+ }
+ 
+-static long get_varian_long(int offset)
++static int get_varian_int(int offset)
+ {
+-    long x;
++    int x;
+ 
+     if (swapped)
+     {
+@@ -572,7 +572,7 @@ static long get_varian_long(int offset)
+ 	SWAP(varian_header[offset+1], varian_header[offset+2], char);
+     }
+ 
+-    x = *((long *) (varian_header + offset));
++    x = *((int *) (varian_header + offset));
+ 
+     return  x;
+ }
+@@ -591,7 +591,7 @@ static short get_varian_short(int offset)
+ 
+ static Status check_varian_header(String error_msg)
+ {
+-    long nblocks, ntraces, np, ebytes, tbytes, /*bbytes,*/ d;
++    int nblocks, ntraces, np, ebytes, tbytes, /*bbytes,*/ d;
+     short status;
+     FILE *fp;
+ 
+@@ -605,17 +605,19 @@ static Status check_varian_header(String error_msg)
+     FCLOSE(fp);
+ 
+     /* numbers in parentheses are offsets into header */
+-    nblocks = get_varian_long(0);   /* number of blocks in file */
+-    ntraces = get_varian_long(4);   /* number of traces per block */
+-    np = get_varian_long(8);	    /* number of elements per trace */
+-    ebytes = get_varian_long(12);   /* number of bytes per element */
+-    tbytes = get_varian_long(16);   /* number of bytes per trace */
+-    /*bbytes = get_varian_long(20);*/   /* number of bytes per block */
++    nblocks = get_varian_int(0);   /* number of blocks in file */
++    printf("nblocks = %d\n", nblocks);
++    ntraces = get_varian_int(4);   /* number of traces per block */
++    printf("ntraces = %d\n", ntraces);
++    np = get_varian_int(8);	    /* number of elements per trace */
++    ebytes = get_varian_int(12);   /* number of bytes per element */
++    tbytes = get_varian_int(16);   /* number of bytes per trace */
++    /*bbytes = get_varian_int(20);*/   /* number of bytes per block */
+ 	    /* short starting at 24 is software version */
+     status = get_varian_short(26);  /* status of whole file */
+ 	    /* long starting at 28 is number of block headers */
+ 
+-    if (ntraces != 1L)
++    if (ntraces != 1)
+ 	RETURN_ERROR_MSG("can only process Varian data with #traces = 1");
+ 
+     if (np != npoints[0])
+@@ -646,12 +648,12 @@ static Status check_varian_header(String error_msg)
+ 
+     if (integer)
+     {
+-	if (ebytes == 2L)
++	if (ebytes == 2)
+ 	{
+ 	    if (status & (1<<2))
+ 		RETURN_ERROR_MSG("Varian header has inconsistent byte information");
+ 	}
+-	else if (ebytes == 4L)
++	else if (ebytes == 4)
+ 	{
+ 	    if (!(status & (1<<2)))
+ 		RETURN_ERROR_MSG("Varian header has inconsistent byte information");
+@@ -666,7 +668,7 @@ static Status check_varian_header(String error_msg)
+     }
+     else /* !integer, i.e. floating point */
+     {
+-	if (ebytes != 4L)
++	if (ebytes != 4)
+ 	    RETURN_ERROR_MSG("Varian header has inconsistent byte information");
+     }
+ 
diff --git a/sci-chemistry/azara/files/2.8-impl-dec.patch b/sci-chemistry/azara/files/2.8-impl-dec.patch
new file mode 100644
index 000000000000..62e8c7d6873b
--- /dev/null
+++ b/sci-chemistry/azara/files/2.8-impl-dec.patch
@@ -0,0 +1,226 @@
+diff --git a/DataRows/data_rows.c b/DataRows/data_rows.c
+index 054fa1f..a07eedc 100644
+--- a/DataRows/data_rows.c
++++ b/DataRows/data_rows.c
+@@ -1,4 +1,5 @@
+ #include "data_rows.h"
++#include "utility.h"
+ 
+ #include "par.h"
+ 
+diff --git a/DataRows/py_data_rows.c b/DataRows/py_data_rows.c
+index fc8b3c8..985e6c3 100644
+--- a/DataRows/py_data_rows.c
++++ b/DataRows/py_data_rows.c
+@@ -1,4 +1,6 @@
+ #include "Python.h"             /* Python header files */
++#include "modsupport.h"
++#include "intobject.h"
+ 
+ #include "data_rows.h"
+ 
+diff --git a/connect/crosspeak.c b/connect/crosspeak.c
+index 0de57bf..7b016e1 100644
+--- a/connect/crosspeak.c
++++ b/connect/crosspeak.c
+@@ -1,4 +1,5 @@
+ #include "crosspeak.h"
++#include "utility.h"
+ 
+ #include "atom.h"
+ #include "table.h"
+diff --git a/connect/shift.c b/connect/shift.c
+index f54ba9f..a880001 100644
+--- a/connect/shift.c
++++ b/connect/shift.c
+@@ -1,4 +1,5 @@
+ #include "shift.h"
++#include "utility.h"
+ 
+ #include "atom.h"
+ #include "table.h"
+diff --git a/global/macros.h b/global/macros.h
+index 43fc43e..bb1d267 100644
+--- a/global/macros.h
++++ b/global/macros.h
+@@ -8,6 +8,7 @@
+ #include <math.h>
+ #include <string.h>
+ #include <stdlib.h>
++#include <ctype.h>
+ 
+ #ifdef WIN32
+ #include <ctype.h>
+diff --git a/global/parser.c b/global/parser.c
+index 007d926..0f19575 100644
+--- a/global/parser.c
++++ b/global/parser.c
+@@ -1,4 +1,5 @@
+ #include "parser.h"
++#include "utility.h"
+ 
+ #define  MAX_NARGS		20
+ 
+diff --git a/peak/fitter.c b/peak/fitter.c
+index ba6b175..b58f573 100644
+--- a/peak/fitter.c
++++ b/peak/fitter.c
+@@ -1,4 +1,5 @@
+ #include "fitter.h"
++#include "data.h"
+ 
+ #include "nonlinear_model.h"
+ 
+diff --git a/peak/peak_fit.c b/peak/peak_fit.c
+index 92c69a8..5b9791f 100644
+--- a/peak/peak_fit.c
++++ b/peak/peak_fit.c
+@@ -6,6 +6,7 @@
+ #include "output.h"
+ #include "ref.h"
+ #include "script_fit.h"
++#include "fitter.h"
+ 
+ #define  MEGAWORD		(1024 * 1024)
+ #define  DEFAULT_STORE		(2 * MEGAWORD)
+diff --git a/plot1/draw.c b/plot1/draw.c
+index 4fdce96..a2a2e8a 100644
+--- a/plot1/draw.c
++++ b/plot1/draw.c
+@@ -1,4 +1,5 @@
+ #include "draw.h"
++#include "ticks.h"
+ 
+ #include "color.h"
+ #include "data.h"
+diff --git a/plot1/object.c b/plot1/object.c
+index 973897c..e043a53 100644
+--- a/plot1/object.c
++++ b/plot1/object.c
+@@ -1,4 +1,5 @@
+ #include "object.h"
++#include "script.h"
+ 
+ #include "color.h"
+ #include "parser.h"
+diff --git a/plot1/output_popup.c b/plot1/output_popup.c
+index 0794584..e73976e 100644
+--- a/plot1/output_popup.c
++++ b/plot1/output_popup.c
+@@ -1,4 +1,5 @@
+ #include "output_popup.h"
++#include "script.h"
+ 
+ #include "output.hlp"
+ 
+diff --git a/plot1/plots.c b/plot1/plots.c
+index 3790f5b..7ac58df 100644
+--- a/plot1/plots.c
++++ b/plot1/plots.c
+@@ -1,4 +1,5 @@
+ #include "plots.h"
++#include "script.h"
+ 
+ #include "data.h"
+ #include "input.h"
+diff --git a/plot1/region_popup.c b/plot1/region_popup.c
+index 68b3930..f049d29 100644
+--- a/plot1/region_popup.c
++++ b/plot1/region_popup.c
+@@ -1,4 +1,5 @@
+ #include "region_popup.h"
++#include "data.h"
+ 
+ #include "region.hlp"
+ 
+diff --git a/plot2/data_popup.c b/plot2/data_popup.c
+index 851b1d4..1c9026e 100644
+--- a/plot2/data_popup.c
++++ b/plot2/data_popup.c
+@@ -1,4 +1,5 @@
+ #include "data_popup.h"
++#include "rowcol_popup.h"
+ 
+ #include "data.hlp"
+ 
+diff --git a/plot2/extract_popup.c b/plot2/extract_popup.c
+index 416aab0..a7fcbf3 100644
+--- a/plot2/extract_popup.c
++++ b/plot2/extract_popup.c
+@@ -1,4 +1,5 @@
+ #include "extract_popup.h"
++#include "script.h"
+ 
+ #include "extract.hlp"
+ 
+diff --git a/plot2/levels_popup.c b/plot2/levels_popup.c
+index 197cf2c..e1ac22c 100644
+--- a/plot2/levels_popup.c
++++ b/plot2/levels_popup.c
+@@ -1,4 +1,5 @@
+ #include "levels_popup.h"
++#include "levels_func.h"
+ 
+ #include "levels.hlp"
+ 
+diff --git a/plot2/plot2.c b/plot2/plot2.c
+index 9ca91c3..0c10d5a 100644
+--- a/plot2/plot2.c
++++ b/plot2/plot2.c
+@@ -1,4 +1,6 @@
+ #include "plot2.h"
++#include "object_popup.h"
++#include "prop_popup.h"
+ 
+ #include "baseline_popup.h"
+ #include "callback.h"
+diff --git a/plot2/rowcol_popup.c b/plot2/rowcol_popup.c
+index e9f4843..6c50426 100644
+--- a/plot2/rowcol_popup.c
++++ b/plot2/rowcol_popup.c
+@@ -1,4 +1,5 @@
+ #include "rowcol_popup.h"
++#include "ref_popup.h"
+ 
+ #include "rowcol.hlp"
+ 
+diff --git a/plot2/script.c b/plot2/script.c
+index 2f55182..d7d886f 100644
+--- a/plot2/script.c
++++ b/plot2/script.c
+@@ -1,4 +1,5 @@
+ #include "script.h"
++#include "macros.h"
+ 
+ #include "param.h"
+ #include "stack.h"
+diff --git a/plot2/slice_popup.c b/plot2/slice_popup.c
+index b601834..1b1e686 100644
+--- a/plot2/slice_popup.c
++++ b/plot2/slice_popup.c
+@@ -1,4 +1,5 @@
+ #include "slice_popup.h"
++#include "rowcol_func.h"
+ 
+ #include "baseline.h"
+ #include "baseline_popup.h"
+diff --git a/process/files.c b/process/files.c
+index e09127e..d95d681 100644
+--- a/process/files.c
++++ b/process/files.c
+@@ -1,4 +1,5 @@
+ #include "files.h"
++#include "macros.h"
+ 
+ #include <sys/types.h>
+ #include <sys/stat.h>
+diff --git a/project/project.c b/project/project.c
+index 92b70e3..a3e6d94 100644
+--- a/project/project.c
++++ b/project/project.c
+@@ -1,4 +1,5 @@
+ #include "project.h"
++#include "utility.h"
+ 
+ #include "block.h"
+ #include "par.h"
diff --git a/sci-chemistry/azara/files/2.8-prll.patch b/sci-chemistry/azara/files/2.8-prll.patch
new file mode 100644
index 000000000000..4720bb659445
--- /dev/null
+++ b/sci-chemistry/azara/files/2.8-prll.patch
@@ -0,0 +1,387 @@
+diff --git a/DataRows/makefile b/DataRows/makefile
+index 587e710..4e0a312 100644
+--- a/DataRows/makefile
++++ b/DataRows/makefile
+@@ -28,7 +28,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-DataRows.so: locals globals
++DataRows.so: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) $(SHARED_FLAGS) -o $@ $(CFLAGS) $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS)
+diff --git a/azara/makefile b/azara/makefile
+index 3ba0cd9..f7b4ce5 100644
+--- a/azara/makefile
++++ b/azara/makefile
+@@ -12,7 +12,7 @@ LOCAL_OBJS = \
+ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/help.o
+ 
+-azara: locals globals
++azara: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/combine/makefile b/combine/makefile
+index a855236..7a83d8f 100644
+--- a/combine/makefile
++++ b/combine/makefile
+@@ -20,7 +20,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-combine: locals globals
++combine: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/connect/makefile b/connect/makefile
+index d75e7da..d238507 100644
+--- a/connect/makefile
++++ b/connect/makefile
+@@ -23,7 +23,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-connect: locals globals
++connect: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/contours/makefile b/contours/makefile
+index 5b832b8..49175dd 100644
+--- a/contours/makefile
++++ b/contours/makefile
+@@ -19,7 +19,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-contours: locals globals
++contours: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/deflate/makefile b/deflate/makefile
+index 4c4e02e..42d5c30 100644
+--- a/deflate/makefile
++++ b/deflate/makefile
+@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-deflate: locals globals
++deflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/extract/makefile b/extract/makefile
+index 3212cb9..fed874b 100644
+--- a/extract/makefile
++++ b/extract/makefile
+@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-extract: locals globals
++extract: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/global/makefile b/global/makefile
+index 364fa41..5272a31 100644
+--- a/global/makefile
++++ b/global/makefile
+@@ -42,6 +42,31 @@ LINPACK_OBJS = \
+ AZARA_OBJS = \
+ 	help.o
+ 
++all: \
++	azara_objects \
++	decay_objects \
++	simulate_objects \
++	viewer_objects \
++	components_objects \
++	shuffle_objects \
++	connect_objects \
++	slides_objects \
++	peak_find_objects \
++	peak_fit_objects \
++	plot1_objects \
++	reflate_objects \
++	deflate_objects \
++	combine_objects \
++	unblock_objects \
++	extract_objects \
++	project_objects \
++	contours_objects \
++	plot2_nog_objects \
++	plot2_objects \
++	process_objects \
++	python_objects \
++	integrate_objects
++
+ azara_objects: $(AZARA_OBJS)
+ 
+ DECAY_OBJS = \
+diff --git a/help/makefile b/help/makefile
+index 9e99a7c..59a86a3 100644
+--- a/help/makefile
++++ b/help/makefile
+@@ -39,7 +39,7 @@ globals:
+ 
+ .c.o:;  $(CC) -c $(CFLAGS) $<
+ 
+-hlp:
++hlp: txt2hlp
+ 	$(TXT2HLP) azara
+ 	$(TXT2HLP) combine
+ 	$(TXT2HLP) connect
+@@ -78,7 +78,7 @@ hlp:
+ 	$(TXT2HLP) plot1/text
+ 	$(TXT2HLP) DataRows
+ 
+-html:
++html: txt2html
+ 	$(TXT2HTML) azara
+ 	$(TXT2HTML) combine
+ 	$(TXT2HTML) connect
+diff --git a/makefile b/makefile
+index 9965b07..f4383af 100644
+--- a/makefile
++++ b/makefile
+@@ -14,7 +14,7 @@ all: help nongui DataRows gui
+ help: \
+ 	help_program
+ 
+-nongui: \
++nongui: help \
+ 	process_program \
+ 	plot2_nog_program \
+ 	peak_program \
+@@ -29,63 +29,66 @@ nongui: \
+ 	connect_program \
+ 	azara_program
+ 
+-gui: \
++gui: help \
+ 	plot2_program \
+ 	plot1_program
+ 
+-DataRows: \
++DataRows: help \
+ 	DataRows
+ 
+-process_program:
+-	cd process; $(MAKE)
++global:
++	$(MAKE) -C global
+ 
+-plot2_program:
+-	cd plot2; $(MAKE) plot2
++process_program: global
++	$(MAKE) -C process
+ 
+-plot2_nog_program:
+-	cd plot2; $(MAKE) plot2_nog
++plot2_program: global
++	$(MAKE) -C plot2
+ 
+-plot1_program:
+-	cd plot1; $(MAKE)
++plot2_nog_program: global
++	$(MAKE) -C plot2 plot2_nog
+ 
+-peak_program:
+-	cd peak; $(MAKE)
++plot1_program: global
++	$(MAKE) -C plot1
+ 
+-extract_program:
+-	cd extract; $(MAKE)
++peak_program:  global process_program
++	$(MAKE) -C peak
+ 
+-project_program:
+-	cd project; $(MAKE)
++extract_program: global
++	$(MAKE) -C extract
+ 
+-unblock_program:
+-	cd unblock; $(MAKE)
++project_program: global
++	$(MAKE) -C project
+ 
+-contours_program:
+-	cd contours; $(MAKE)
++unblock_program: global
++	$(MAKE) -C unblock
+ 
+-combine_program:
+-	cd combine; $(MAKE)
++contours_program: global
++	$(MAKE) -C contours
+ 
+-deflate_program:
+-	cd deflate; $(MAKE)
++combine_program: global
++	$(MAKE) -C combine
+ 
+-reflate_program:
+-	cd reflate; $(MAKE)
++deflate_program: global
++	$(MAKE) -C deflate
+ 
+-utility_program:
+-	cd utility; $(MAKE)
++reflate_program: global
++	$(MAKE) -C reflate
+ 
+-connect_program:
+-	cd connect; $(MAKE)
++utility_program: global
++	$(MAKE) -C utility
+ 
+-help_program:
+-	cd help; $(MAKE)
++connect_program: global
++	$(MAKE) -C connect
+ 
+-azara_program:
+-	cd azara; $(MAKE)
++help_program: global
++	$(MAKE) -C help
+ 
+-DataRows:
+-	cd DataRows; $(MAKE)
++azara_program: global
++	$(MAKE) -C azara
++
++DataRows: global
++	$(MAKE) -C DataRows
+ 
+ clean: \
+ 	global_clean \
+@@ -227,3 +230,5 @@ azara_realclean:
+ DataRows_realclean:
+ 	cd DataRows; $(MAKE) realclean
+ 
++
++.PHONY: global process_program
+diff --git a/peak/makefile b/peak/makefile
+index f3c13b7..4211221 100644
+--- a/peak/makefile
++++ b/peak/makefile
+@@ -97,13 +97,13 @@ COMMAND_OBJS = \
+ 
+ all: peak_find peak_fit
+ 
+-peak_find: local_find global_find
++peak_find: $(LOCAL_FIND_OBJS) $(GLOBAL_FIND_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_FIND_OBJS) \
+ 		$(GLOBAL_FIND_OBJS) \
+ 		$(LIB) $(MATH_LIB)
+ 
+-peak_fit: local_fit global_fit commands
++peak_fit: $(LOCAL_FIT_OBJS) $(GLOBAL_FIT_OBJS) $(COMMAND_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_FIT_OBJS) \
+ 		$(GLOBAL_FIT_OBJS) \
+diff --git a/plot1/makefile b/plot1/makefile
+index d1dce2d..e729443 100644
+--- a/plot1/makefile
++++ b/plot1/makefile
+@@ -95,7 +95,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/utility.o \
+ 	$(GLOBAL_DIR)/window.o
+ 
+-plot1: locals globals
++plot1: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+@@ -110,7 +110,7 @@ locals:
+ globals:
+ 	cd $(GLOBAL_DIR); $(MAKE) plot1_objects
+ 
+-.c.o:;	$(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) $<
++.c.o:;	$(CC) $(X11_INCLUDE_DIR) $(MOTIF_INCLUDE_DIR) -c $(CFLAGS) -I../plot2 $<
+ 
+ clean:
+ 	rm -f *.o
+diff --git a/plot2/makefile b/plot2/makefile
+index a6b7b4a..98e286e 100644
+--- a/plot2/makefile
++++ b/plot2/makefile
+@@ -129,7 +129,7 @@ GLOBAL_PLOT2_NOG_OBJS = \
+ 
+ all: plot2 plot2_nog
+ 
+-plot2: local_plot2 global_plot2
++plot2: $(LOCAL_PLOT2_OBJS) $(GLOBAL_PLOT2_OBJS) 
+ 	$(CC) -o $@ $(CFLAGS) $(LFLAGS) \
+ 		$(LOCAL_PLOT2_OBJS) \
+ 		$(GLOBAL_PLOT2_OBJS) \
+@@ -137,7 +137,7 @@ plot2: local_plot2 global_plot2
+ 		$(LIB) $(MATH_LIB) \
+ 		$(MOTIF_LIB) $(X11_LIB) $(XPM_LIB)
+ 
+-plot2_nog: local_plot2_nog global_plot2_nog
++plot2_nog: $(LOCAL_PLOT2_NOG_OBJS) $(GLOBAL_PLOT2_NOG_OBJS)
+ 	$(CC) -o $@ $(CFLAGS) $(LFLAGS) \
+ 		$(LOCAL_PLOT2_NOG_OBJS) \
+ 		$(GLOBAL_PLOT2_NOG_OBJS) \
+diff --git a/process/makefile b/process/makefile
+index 22ceeed..72d587b 100644
+--- a/process/makefile
++++ b/process/makefile
+@@ -72,7 +72,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/utility.o \
+ 	$(LINPACK_OBJS)
+ 
+-process: locals globals
++process: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/project/makefile b/project/makefile
+index 78143fc..ed0f296 100644
+--- a/project/makefile
++++ b/project/makefile
+@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-project: locals globals
++project: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/reflate/makefile b/reflate/makefile
+index 079a3fc..01ec311 100644
+--- a/reflate/makefile
++++ b/reflate/makefile
+@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-reflate: locals globals
++reflate: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
+diff --git a/unblock/makefile b/unblock/makefile
+index 510dc9e..d9a0f2b 100644
+--- a/unblock/makefile
++++ b/unblock/makefile
+@@ -18,7 +18,7 @@ GLOBAL_OBJS = \
+ 	$(GLOBAL_DIR)/ref.o \
+ 	$(GLOBAL_DIR)/utility.o
+ 
+-unblock: locals globals
++unblock: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) -o $@ $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+ 		$(GLOBAL_OBJS) \
diff --git a/sci-chemistry/azara/files/2.8-python.patch b/sci-chemistry/azara/files/2.8-python.patch
new file mode 100644
index 000000000000..9834c77a77dc
--- /dev/null
+++ b/sci-chemistry/azara/files/2.8-python.patch
@@ -0,0 +1,44 @@
+diff --git a/DataRows/makefile b/DataRows/makefile
+index 4e0a312..ce261ab 100644
+--- a/DataRows/makefile
++++ b/DataRows/makefile
+@@ -22,16 +22,17 @@ LOCAL_OBJS = \
+ 	data_rows.o
+ 
+ GLOBAL_OBJS = \
+-	$(GLOBAL_DIR)/block_io.o \
+-	$(GLOBAL_DIR)/par.o \
+-	$(GLOBAL_DIR)/parse.o \
+-	$(GLOBAL_DIR)/ref.o \
+-	$(GLOBAL_DIR)/utility.o
++	block_io.o \
++	par.o \
++	parse.o \
++	ref.o \
++	utility.o
+ 
+ DataRows.so: $(LOCAL_OBJS) $(GLOBAL_OBJS)
+ 	$(CC) $(SHARED_FLAGS) -o $@ $(CFLAGS) $(LFLAGS) \
+ 		$(LOCAL_OBJS) \
+-		$(GLOBAL_OBJS)
++		$(GLOBAL_OBJS) \
++		$(PYTHON_LIB)
+ 
+ local_objects: $(LOCAL_OBJS)
+ 
+@@ -42,9 +43,13 @@ globals:
+ 	cd $(GLOBAL_DIR); $(MAKE) python_objects
+ 
+ py_data_rows.o: py_data_rows.c
+-	$(CC) -c $(CFLAGS) $(PYTHON_INCLUDE_DIR) $<
++	$(CC) -c $(CFLAGS) $(PIC) $(PYTHON_INCLUDE_DIR) $<
+ 
+-.c.o:;	$(CC) -c $(CFLAGS) $<
++data_rows.o: data_rows.c
++	$(CC) -c $(CFLAGS) $(PIC) $<
++
++%.o: $(GLOBAL_DIR)/%.c
++	$(CC) -c $(CFLAGS) $(PIC) $<
+ 
+ clean:
+ 	rm -f *.o