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| author |   David Seifert <soap@gentoo.org> | 2018-10-28 21:24:33 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2018-10-28 21:24:33 +0100 |
| commit | 85fad26e8efb7e2fc01de49e59a0d7e0b210c5bc (patch) | |
| tree | 692a7ea3bedbf83e8cbf769dbadcb455aa0d3868 /sci-libs | |
| parent | app-xemacs/text-modes: stable 2.06 for sparc, bug #666312 (diff) | |
| download | gentoo-85fad26e8efb7e2fc01de49e59a0d7e0b210c5bc.tar.gz gentoo-85fad26e8efb7e2fc01de49e59a0d7e0b210c5bc.tar.bz2 gentoo-85fad26e8efb7e2fc01de49e59a0d7e0b210c5bc.zip | |
sci-libs/htslib: Version bump to 1.9
Bug: https://bugs.gentoo.org/647714
Signed-off-by: David Seifert <soap@gentoo.org>
Package-Manager: Portage-2.3.50, Repoman-2.3.11
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/htslib/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/htslib/htslib-1.9.ebuild | 45 |
2 files changed, 46 insertions, 0 deletions
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest index 6841d0a69fb9..e818f35f1473 100644 --- a/sci-libs/htslib/Manifest +++ b/sci-libs/htslib/Manifest @@ -1 +1,2 @@ DIST htslib-1.5.tar.bz2 1051132 BLAKE2B 90c6aeeaa2a2692228aa1f530d775a6e81f9275d321e8b2d6005b86b9a25e5967acca19dd898311a5bc4f3c17d4e8ea36d18da4602e18fadee47666350122077 SHA512 fd58552ddbd178f9797123fdaf47914ccd0e2aefd055fc6557ac8f479c600775616107cfa871c3acd93079f45974a19f443941a79f2acfd2a8c2983ef35b8917 +DIST htslib-1.9.tar.bz2 1178859 BLAKE2B a0229313d3572717101f4f23d39fa124f3bb38d8b2e65055f4f801dbb5f1549df95115e8beadd8fa024171b3ff8a874d20087bf71819c36700666f168dbe41ab SHA512 ddb0e2d970e4c2c27e203b064898f95cb7c187cd497c02fc7b4312dcea25669d0b6063d537687521e7a065f6daefa1ae897add2df4981037a187b499d08fdef7 diff --git a/sci-libs/htslib/htslib-1.9.ebuild b/sci-libs/htslib/htslib-1.9.ebuild new file mode 100644 index 000000000000..69df48a332f2 --- /dev/null +++ b/sci-libs/htslib/htslib-1.9.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="C library for high-throughput sequencing data formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" + +SLOT="0/2" +LICENSE="MIT" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bzip2 curl +lzma static-libs" + +RDEPEND=" + bzip2? ( app-arch/bzip2:= ) + curl? ( net-misc/curl ) + lzma? ( app-arch/xz-utils:= )" +DEPEND="${RDEPEND}" + +src_prepare() { + default + + # upstream injects LDFLAGS into the .pc file, + # which is a big nono for QA + sed 's/private_LIBS=$LDFLAGS/private_LIBS=""/g' -i configure || die +} + +src_configure() { + econf \ + --disable-gcs \ + --disable-plugins \ + --disable-s3 \ + $(use_enable bzip2 bz2) \ + $(use_enable curl libcurl) \ + $(use_enable lzma) +} + +src_install() { + default + + if ! use static-libs; then + find "${D}" -name '*.a' -delete || die + fi +} |