sci-misc/netlogo-bin: add 6.2.0

- Fixed the icons (no longer available for download due to
	retirement of the maintainging dev)
- Fixed desktop files to adhere to feedesktop guidelines
- netlogo-headless now works (calls the system java version now)
- behaviorsearch now starts the gui instead of headless mode
	headless mode moved to behavioursearch_headless
- Install more docs
- Fixed double installation of docs
- Fixed QA Notice unresolved SONAME deps due to the pack installing
	both libs for x86 *and* amd64 which triggered this warning
	since icedtea does not install x86 libs on amd64 and viceversa
- Added missing deps on mesa and libdrm
- Fixed typo in DESCRIPTION
- Made HOMEPAGE https instead of http

Closes: https://bugs.gentoo.org/300503
Closes: https://bugs.gentoo.org/782001
Closes: https://bugs.gentoo.org/693890
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

2 files changed, 115 insertions, 0 deletions

diff --git a/sci-misc/netlogo-bin/Manifest b/sci-misc/netlogo-bin/Manifest
index 963955e1ec0a..076b9509d522 100644
--- a/sci-misc/netlogo-bin/Manifest
+++ b/sci-misc/netlogo-bin/Manifest
@@ -1,4 +1,7 @@
 DIST NetLogo-6.0.2-32.tgz 192943415 BLAKE2B c7d20154ade89ae54f98fa08ae4832d9c81a97d1a7a93aaf0de75bd2914bae340ddd71dc3862957bf7e22863d5df9c5464a2bcd517ff0e9b087105237a8d5ac9 SHA512 ac8652a2487b01d02af0c8510ce4c80b2bf84cf2afc3d1bfbda198c1b7aeb0c5cbd85664e9841bc7704aec048482bc78306035673d2d59be67fb2ae50b63106b
 DIST NetLogo-6.0.2-64.tgz 190213078 BLAKE2B 6b0a077538f3e3f3e7769c605a67f6bb6b791319877910eac74e065091d3f6b8cd328d8b354415234b2dd9d4b96b3ca7d18074f54263f460f38b77b8dbe4b9bb SHA512 091200b66305e3ff84e9d1b9a293eaa5f6000a103de86d942c5d0f749aee52cf5519954d05807609f7c0cbeceeab15930ef48612b4f6c1445e529e876aaa9d8e
+DIST NetLogo-6.2.0-32.tgz 225021142 BLAKE2B e7570ae8d865a650ebc90fe66d57aefaa1f413dea54f778ee3f0d5621fad40c16e2a7d3e26f6d51b08f02c25a1adc7ed30e22e01b43abc68b933f414ff57461f SHA512 9c399a00a49ccc0d40e1ddb3c61e41b3aa4e5aff50cf7d872f954ea47956f60faec8f5c0f0082e5b35070d32129c5b8eecceeb93d39b878ad58f13850ccd358f
+DIST NetLogo-6.2.0-64.tgz 224714930 BLAKE2B 5149f9b3ad9e49f50b907223ca554ec9bb01fc679a94f2dfe38d4c2535f6f9d3529d2189362a910ae0cc802e9e0de11f46e6dd0453b91caa87410990a7c80b52 SHA512 e6323ef608db55a187ba26604336a927ddcb6de3c51d8d6d5c701f1d1d2041752efe856f564aff50133446f9d51b663258e29bc18e1a42ffa3f6107023538f36
 DIST netlogo-5.0.3.tar.gz 66725456 BLAKE2B 85df19cd0ef501c903e9b2f2ee2a6ca39430a5f64e1086365b9a29baa3962a7e1d018001652db7da54f1d6623b477d644f7b745b30e2c3be3462f5cb4e5cb891 SHA512 39d660d5dbd7e74f072621a74bfc18648ed208b833b3d442f2a9dbefc673065c4a7bf0e4a8ebb670b4d4220ee7bec452cc97f32731a28ca2eb56656bea795b81
 DIST netlogo.gif.tar 10240 BLAKE2B 5199290ca492dc4be03dac04a672b4a187daa6caa12a5a487137259071dad156e553ca7eea02f6cd7d66187e4956324fc2d3f2818f10f1557f276f003986be69 SHA512 9a9bc81660599d2b35875f301d5b9824bfa2dafa21dc96b1e6e281d4682ab7b4052844a961b46f5300131c91a4562c58e4b1a4d753cb2b24a18e64b42d333e32
+DIST netlogo.png 23702 BLAKE2B 60816d1bf1ee265b6d4dfa7f4d4b3df22d03996b551d7056b51ea8fc2703a6037fb7d0fb1fc5d0557255eac569aeb17dc0f32bfc91db2b13411588e5f821bdba SHA512 37945b2739f7f25f5b443c03914c4f6e28ed81efe2a0eca5dd83c7c5961fdeeb681b80b162dc45e1de3f65e013a38999b91b9b0ad1cfd5bf664d5e11029b62dd
diff --git a/sci-misc/netlogo-bin/netlogo-bin-6.2.0.ebuild b/sci-misc/netlogo-bin/netlogo-bin-6.2.0.ebuild
new file mode 100644
index 000000000000..9973c0903d7d
--- /dev/null
+++ b/sci-misc/netlogo-bin/netlogo-bin-6.2.0.ebuild
@@ -0,0 +1,112 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit desktop java-pkg-2 xdg
+
+MY_PN="NetLogo"
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="Programming language and IDE for agent-based modelling"
+HOMEPAGE="https://ccl.northwestern.edu/netlogo/"
+SRC_URI="
+	https://netlogoweb.org/assets/images/desktopicon.png -> ${PN//-bin}.png
+	amd64? ( https://ccl.northwestern.edu/netlogo/${PV}/${MY_P}-64.tgz )
+	x86? ( https://ccl.northwestern.edu/netlogo/${PV}/${MY_P}-32.tgz )
+"
+S="${WORKDIR}/${MY_PN} ${PV}"
+
+LICENSE="netlogo GPL-2 LGPL-2.1 LGPL-3 BSD Apache-2.0"
+SLOT="0"
+KEYWORDS="-* ~amd64 ~x86"
+
+RDEPEND="
+	>=virtual/jre-1.8:*
+	media-libs/mesa
+	x11-libs/libdrm
+	x11-libs/libX11
+	x11-libs/libXrender
+	x11-libs/libXxf86vm
+"
+
+DOCS=(
+	"readme.md"
+	"NetLogo User Manual.pdf"
+	"Mathematica Link/NetLogo-Mathematica Tutorial.pdf"
+	"app/behaviorsearch/README.TXT"
+)
+HTML_DOCS=(
+	"app/docs"
+	"app/behaviorsearch/documentation"
+)
+
+QA_PREBUILT="opt/netlogo/app/natives/linux-*/*.so"
+
+src_install() {
+	einstalldocs
+
+	# Remove the bundled libs if we are not installing on this arch
+	# This avoids: "QA Notice: Unresolved SONAME dependencies:"
+	if ! use amd64; then
+		rm -r app/natives/linux-amd64 || die
+	fi
+	if ! use x86; then
+		rm -r app/natives/linux-i586 || die
+	fi
+
+	# Override the config files so they don't use the bundled java path
+	sed -i -e 's/app.runtime=.*/app.runtime=$JAVA_HOME/g' app/*.cfg || die
+
+	local basedir="/opt/${PN//-bin}"
+	insinto "${basedir}"
+	doins -r app/
+	# The whitespace causes issues when we try to java-pkg_regjar, because
+	# classpath can't contain paths with whitespaces
+	mv "Mathematica Link/" "MathematicaLink/" || die
+	doins -r "MathematicaLink/"
+
+	doicon -s 256x256 "${DISTDIR}/${PN//-bin}.png"
+	doicon -s scalable app/behaviorsearch/resources/icon_behaviorsearch.svg
+	doicon -s 256x256 app/behaviorsearch/resources/icon_behaviorsearch.png
+
+	# Register all these jars so they are available in the classpath
+	for jar in "${ED}/${basedir}/app/"*.jar ; do
+		java-pkg_regjar "${jar}"
+	done
+	java-pkg_regjar "${ED}/${basedir}/MathematicaLink/mathematica-link.jar"
+
+	use amd64 && java-pkg_dolauncher netlogo3d \
+		--main org.nlogo.app.App \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dnetlogo.extensions.dir=${EPREFIX}/${basedir}/app/extensions -Dorg.nlogo.is3d=true -Djava.library.path=${EPREFIX}/${basedir}/app/natives/linux-amd64/:\${env_var:PATH}"
+	use x86 && java-pkg_dolauncher netlogo3d \
+		--main org.nlogo.app.App \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dnetlogo.extensions.dir=${EPREFIX}/${basedir}/app/extensions -Dorg.nlogo.is3d=true -Djava.library.path=${EPREFIX}/${basedir}/app/natives/linux-i586/:\${env_var:PATH}"
+	java-pkg_dolauncher netlogo \
+		--main org.nlogo.app.App \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dnetlogo.extensions.dir=${EPREFIX}/${basedir}/app/extensions"
+	java-pkg_dolauncher netlogo-headless \
+		--main org.nlogo.headless.Main \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dnetlogo.extensions.dir=${EPREFIX}/${basedir}/app/extensions"
+	java-pkg_dolauncher hubnetclient \
+		--main org.nlogo.hubnet.client.App \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dnetlogo.extensions.dir=${EPREFIX}/${basedir}/app/extensions -Dorg.nlogo.is3d=true"
+	java-pkg_dolauncher behaviorsearch \
+		--main bsearch.app.BehaviorSearchGUI \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dbsearch.startupfolder=${EPREFIX}/${basedir} -Dbsearch.appfolder=${EPREFIX}/${basedir}/app/behaviorsearch -server"
+	java-pkg_dolauncher behaviorsearch-headless \
+		--main bsearch.app.BehaviorSearch \
+		--pwd "${EPREFIX}/${basedir}" \
+		--java_args "-Dbsearch.startupfolder=${EPREFIX}/${basedir} -Dbsearch.appfolder=${EPREFIX}/${basedir}/app/behaviorsearch -server"
+
+	make_desktop_entry netlogo "NetLogo" netlogo
+	make_desktop_entry netlogo3d "NetLogo 3D" netlogo
+	make_desktop_entry hubnetclient "NetLogo Hubnet Client" netlogo
+	make_desktop_entry behaviorsearch "NetLogo Behavior Search" icon_behaviorsearch
+}