diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
158 files changed, 210 insertions, 210 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 index bddab321e2d8..69d5fea4b977 100644 --- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 +++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 @@ -10,5 +10,5 @@ RESTRICT=mirror SLOT=0 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip _eclass_exported_funcs=src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bf78ab8abbdb34e4f7d5c8a0b4429c0f diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 index f543ffef7f01..689de7c4dca5 100644 --- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 +++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 @@ -10,5 +10,5 @@ RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio SLOT=0 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz _eclass_exported_funcs=pkg_prerm:webapp pkg_postinst:webapp pkg_setup:webapp src_unpack:perl-module src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 webapp a76ebd3cb5649737496e8238992dd7ca +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 webapp a76ebd3cb5649737496e8238992dd7ca _md5_=bccaeef3292f6df307fc14fb5a2a74b2 diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 index 8d182e85d350..2c93dd58b62b 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler EAPI=6 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ @@ -10,5 +10,5 @@ RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virt SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz -> abyss-2.0.2.tar.gz _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=3b173739bd4e2f9d61a49918b3b8bc05 diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 index bf2c9220c94a..54795dc0cfef 100644 --- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 +++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare pretend setup -DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=De novo assembly of whole-genome shotgun microreads EAPI=6 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd @@ -9,5 +9,5 @@ RDEPEND=!sci-biology/allpaths !sci-biology/vaal SLOT=0 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=89ad1ab9497c178e43302814589f5f26 diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3 index 34e403f0e28c..9be351a7b6c2 100644 --- a/metadata/md5-cache/sci-biology/amap-2.2-r3 +++ b/metadata/md5-cache/sci-biology/amap-2.2-r3 @@ -10,5 +10,5 @@ RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 ) SLOT=0 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz _eclass_exported_funcs=pkg_preinst:java-pkg-opt-2 pkg_setup:java-pkg-opt-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-opt-2 be255db325e3af8fbf3506cf63998341 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-opt-2 be255db325e3af8fbf3506cf63998341 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=6bd792e8b76c06ee993b88f83e48b907 diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r3 b/metadata/md5-cache/sci-biology/amos-3.1.0-r3 index 557f4170dffa..17094f202f54 100644 --- a/metadata/md5-cache/sci-biology/amos-3.1.0-r3 +++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare setup -DEPEND=qt4? ( dev-qt/qtcore:4 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=qt4? ( dev-qt/qtcore:4 ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Modular, Open-Source whole genome assembler EAPI=6 HOMEPAGE=http://amos.sourceforge.net/ @@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2 _eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=df778f6981c64e06ab2354697c3fc4a6 diff --git a/metadata/md5-cache/sci-biology/arb-5.1-r1 b/metadata/md5-cache/sci-biology/arb-5.1-r1 index 934053dbcbce..95b788590c62 100644 --- a/metadata/md5-cache/sci-biology/arb-5.1-r1 +++ b/metadata/md5-cache/sci-biology/arb-5.1-r1 @@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11 SLOT=0 SRC_URI=http://download.arb-home.de/release/arb_5.1/arbsrc.tgz -> arb-5.1.tgz mirror://gentoo/arb-5.1-glibc2.10.patch.bz2 https://dev.gentoo.org/~jlec/arb-5.1-linker.patch.bz2 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=55cafcf3d37a81cfa2273ca02c35bb00 diff --git a/metadata/md5-cache/sci-biology/arb-5.2 b/metadata/md5-cache/sci-biology/arb-5.2 index 33ec6f1cc259..126e05864ed0 100644 --- a/metadata/md5-cache/sci-biology/arb-5.2 +++ b/metadata/md5-cache/sci-biology/arb-5.2 @@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11 SLOT=0 SRC_URI=http://download.arb-home.de/release/arb_5.2/arbsrc.tgz -> arb-5.2.tgz https://dev.gentoo.org/~jlec/distfiles/arb-5.2-linker.patch.bz2 _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=f0ab0e2c5ca080655274968b7915db12 diff --git a/metadata/md5-cache/sci-biology/arb-5.3 b/metadata/md5-cache/sci-biology/arb-5.3 index 284da50b4474..3ec372714746 100644 --- a/metadata/md5-cache/sci-biology/arb-5.3 +++ b/metadata/md5-cache/sci-biology/arb-5.3 @@ -10,5 +10,5 @@ RDEPEND=app-text/sablotron media-libs/libpng media-libs/tiff www-client/lynx x11 SLOT=0 SRC_URI=http://download.arb-home.de/release/arb_5.3/arbsrc.tgz -> arb-5.3.tgz https://dev.gentoo.org/~jlec/distfiles/arb-5.3-linker.patch.xz _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bf2908058bcd4bfbaa7c0eb481d7c999 diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5 index dd7ee57f74ae..9ae7a105ecf5 100644 --- a/metadata/md5-cache/sci-biology/augustus-2.5.5 +++ b/metadata/md5-cache/sci-biology/augustus-2.5.5 @@ -8,5 +8,5 @@ LICENSE=Artistic SLOT=0 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=5660f556708e8c3b5d43c9ef832e66ec diff --git a/metadata/md5-cache/sci-biology/bamtools-2.4.1 b/metadata/md5-cache/sci-biology/bamtools-2.4.1 index 07cafea29d83..2e9d742a02b6 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.4.1 +++ b/metadata/md5-cache/sci-biology/bamtools-2.4.1 @@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/jsoncpp-1.8.0 sys-libs/zlib SLOT=0 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.4.1.tar.gz -> bamtools-2.4.1.tar.gz _eclass_exported_funcs=src_prepare:cmake-utils src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=d1565aa3d9a639f7316a0c8588ecfc41 diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 index ea5dd762896c..5aa015fa0321 100644 --- a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 +++ b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 @@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-j SLOT=0 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/beast-mcmc-1.7.5.tar.xz _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=ff6d5ad394902a1137f7b3a310e2da17 diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-9999 b/metadata/md5-cache/sci-biology/beast-mcmc-9999 index 28532bb37931..cc5e39149c3a 100644 --- a/metadata/md5-cache/sci-biology/beast-mcmc-9999 +++ b/metadata/md5-cache/sci-biology/beast-mcmc-9999 @@ -8,5 +8,5 @@ LICENSE=LGPL-3 RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3 SLOT=0 _eclass_exported_funcs=pkg_preinst:subversion pkg_setup:java-pkg-2 src_unpack:subversion src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=8ad11964919894b7a04467aea903b1c3 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0 index 3fed6b13d883..d5c4414ec188 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.26.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz _eclass_exported_funcs=pkg_setup:python-any-r1 src_configure:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-any-r1 be89e882151ba4b847089b860d79729c python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-any-r1 be89e882151ba4b847089b860d79729c python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=76f5a1f39ff7b393994b8a22dc4a192f diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index eda495011329..5b8f8d829b2a 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Blat-like Fast Accurate Search Tool EAPI=5 HOMEPAGE=https://sourceforge.net/projects/bfast/ @@ -10,5 +10,5 @@ RDEPEND=dev-perl/XML-Simple SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=abc362f15c5107d96bedfb879ea0375f diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 index db7f98291eeb..e5907d7cb9c9 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs EAPI=6 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html @@ -9,5 +9,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=9731727dae2a2514bcaa486b0059272e diff --git a/metadata/md5-cache/sci-biology/biopandas-0.1.4 b/metadata/md5-cache/sci-biology/biopandas-0.1.4 index 502baf8ee4d7..8c013c1ddac8 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.1.4 +++ b/metadata/md5-cache/sci-biology/biopandas-0.1.4 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.1.4.tar.gz _eclass_exported_funcs=src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1 -_eclasses_=distutils-r1 039ba10839816478cfb070fdeb053906 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 +_eclasses_=distutils-r1 039ba10839816478cfb070fdeb053906 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 _md5_=4bf8773b4c6c512c3e616bf999994904 diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9 index caec70330b8f..2e5170e1525b 100644 --- a/metadata/md5-cache/sci-biology/bioperl-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9 @@ -12,5 +12,5 @@ REQUIRED_USE=minimal? ( !graphviz ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=be22a76392a6e5c121e4b6d388045faa diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1 index 9ebf1ff3d5a0..e1e3ab4db623 100644 --- a/metadata/md5-cache/sci-biology/bioperl-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1 @@ -9,5 +9,5 @@ PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-d RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)] SLOT=0 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=2f5a1a5be901fb9aa471a5694313f16c diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 index 9f4cad2ad8c3..02f3aea9d581 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/ SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=1929bfeb08b2fcef94d459af1afdd442 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 index d7000a468ec0..616546f84071 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 @@ -7,5 +7,5 @@ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)] SLOT=0 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:- src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=8f167dd7c94de9ed0f8fa3bb689ac020 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 index ada049588275..50e4a2871a1d 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=cb366a6a0c6cf3c12320c2d6d3551abe diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 index f8d0861aebad..46902e2732aa 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=b2079f6491e945f3e9aed1677de8c755 diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 index ff35bb8d5284..169fabbac6e4 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 @@ -11,5 +11,5 @@ RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=9caec4e5b47cbf306a1689903f2a018a diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 index df22b90a4e7d..e5bf5da84643 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 @@ -9,5 +9,5 @@ RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/ RESTRICT=test SLOT=0 _eclass_exported_funcs=src_unpack:git-2 src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=f7b2d645e2b1e254f05dc0c7127e26df diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68 index f7713c6a9af1..13143bb58910 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.68 +++ b/metadata/md5-cache/sci-biology/biopython-1.68 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_py SLOT=0 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1 -_eclasses_=distutils-r1 039ba10839816478cfb070fdeb053906 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 +_eclasses_=distutils-r1 039ba10839816478cfb070fdeb053906 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 _md5_=0435edc9aefff4e2ffb912314f75430a diff --git a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 index 1957cd9e86fb..ed6ed7360160 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 +++ b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( ruby_targets_ruby21 ) SLOT=0 SRC_URI=http://www.bioruby.org/archive/bioruby-1.4.3.0001.tar.gz _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 ruby-fakegem e081b7d03e9e4ab4beba3ea9f44468d1 ruby-ng 2abd9e38aac141db06ae38bf32e748cd ruby-utils e9d0baddf239294b286da449ae7ac6a3 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 ruby-fakegem e081b7d03e9e4ab4beba3ea9f44468d1 ruby-ng 2abd9e38aac141db06ae38bf32e748cd ruby-utils e9d0baddf239294b286da449ae7ac6a3 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=5c85b93179ee11b962ff0328399497f6 diff --git a/metadata/md5-cache/sci-biology/bioruby-9999 b/metadata/md5-cache/sci-biology/bioruby-9999 index ffc1e30dc8af..c9312c97763e 100644 --- a/metadata/md5-cache/sci-biology/bioruby-9999 +++ b/metadata/md5-cache/sci-biology/bioruby-9999 @@ -9,5 +9,5 @@ RDEPEND=ruby_targets_ruby21? ( dev-ruby/libxml[ruby_targets_ruby21] ) ruby_targe REQUIRED_USE=|| ( ruby_targets_ruby21 ) SLOT=0 _eclass_exported_funcs=pkg_setup:ruby-ng src_unpack:ruby-ng src_prepare:ruby-ng src_configure:ruby-ng src_compile:ruby-ng src_test:ruby-ng src_install:ruby-ng -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 ruby-fakegem e081b7d03e9e4ab4beba3ea9f44468d1 ruby-ng 2abd9e38aac141db06ae38bf32e748cd ruby-utils e9d0baddf239294b286da449ae7ac6a3 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 ruby-fakegem e081b7d03e9e4ab4beba3ea9f44468d1 ruby-ng 2abd9e38aac141db06ae38bf32e748cd ruby-utils e9d0baddf239294b286da449ae7ac6a3 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=62f85ead0efdc1239f23d00c9b8ec065 diff --git a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 index c47ee493ec26..339a60efed80 100644 --- a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 +++ b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A linkage disequilibrium association mapping tool EAPI=6 HOMEPAGE=http://www.daimi.au.dk/~mailund/Blossoc/ @@ -9,5 +9,5 @@ RDEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile SLOT=0 SRC_URI=http://www.daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=2fe1853c7621b633d2ee794ef3176e3f diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2 b/metadata/md5-cache/sci-biology/bowtie-1.1.2 index aa726201a986..134a21fb6fbe 100644 --- a/metadata/md5-cache/sci-biology/bowtie-1.1.2 +++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2 @@ -9,5 +9,5 @@ LICENSE=Artistic SLOT=1 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d123eea345ef4aa6c2c174df53575eeb diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 index c76bf66ea1ae..e68eab4cadb7 100644 --- a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 +++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 @@ -10,5 +10,5 @@ RDEPEND=tbb? ( dev-cpp/tbb ) SLOT=1 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=069dc133bc01cabadeda1e327034b7a7 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.6 b/metadata/md5-cache/sci-biology/bowtie-2.2.6 index 6651436e3d6a..370acf8efaf2 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.2.6 +++ b/metadata/md5-cache/sci-biology/bowtie-2.2.6 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip _eclass_exported_funcs=pkg_pretend:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=9a4ea0d94d151da708192284a1117dd7 diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.12 b/metadata/md5-cache/sci-biology/bwa-0.7.12 index f403f1d7c116..9512b61d21a2 100644 --- a/metadata/md5-cache/sci-biology/bwa-0.7.12 +++ b/metadata/md5-cache/sci-biology/bwa-0.7.12 @@ -7,5 +7,5 @@ LICENSE=GPL-3 SLOT=0 SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.12.tar.bz2 _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=ae8e9d2f58c9bc5022e9e224c56d2e6d diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 index 70cb216ec38a..e8f0711c9fc0 100644 --- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 +++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl SLOT=0 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bbe0ae10275a73485487e08f19f4ac1b diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.1 index 3bd2387bed38..6d4c89051692 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.1 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=dev-libs/argtable !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=5 HOMEPAGE=http://www.clustal.org/omega/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=31d235d5645f367b8eb15e10358c7475 diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.3 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.3 index d16ec0d3b0df..64cc3fd07bd4 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.3 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.3 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/argtable !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=6 HOMEPAGE=http://www.clustal.org/omega/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.3.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=2e8f46674a2f0906f57ffd70a5ebb549 diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 index b6276d4b57fc..9f09988e567f 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/argtable !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=6 HOMEPAGE=http://www.clustal.org/omega/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a497f56fb650c3a8ca539939429b6bfb diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r1 b/metadata/md5-cache/sci-biology/clustalx-2.1-r1 index 4980a1201748..7537e85efa50 100644 --- a/metadata/md5-cache/sci-biology/clustalx-2.1-r1 +++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r1 @@ -9,5 +9,5 @@ RDEPEND=dev-qt/qtcore:4 dev-qt/qtgui:4 >=sci-biology/clustalw-2.1 SLOT=0 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz _eclass_exported_funcs=src_unpack:qt4-r2 src_prepare:- src_configure:qt4-r2 src_compile:qt4-r2 src_install:- -_eclasses_=base df2aa567b3f0595aae0d0923889f7631 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 qmake-utils ea78a9056543346cdc8cbbd07f16c6fb qt4-r2 b7985a3197fbc3a22d059f19904e735b toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=base df2aa567b3f0595aae0d0923889f7631 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 qmake-utils ea78a9056543346cdc8cbbd07f16c6fb qt4-r2 b7985a3197fbc3a22d059f19904e735b toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=8348b4854d048ec19d5706f2d0461a2c diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r2 b/metadata/md5-cache/sci-biology/clustalx-2.1-r2 index b97a0a1727ba..448ca06f3663 100644 --- a/metadata/md5-cache/sci-biology/clustalx-2.1-r2 +++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r2 @@ -9,5 +9,5 @@ RDEPEND=dev-qt/qtcore:4 dev-qt/qtgui:4 >=sci-biology/clustalw-2.1 SLOT=0 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz _eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 qmake-utils ea78a9056543346cdc8cbbd07f16c6fb toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 qmake-utils ea78a9056543346cdc8cbbd07f16c6fb toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=660b3463bc17c65cb8772961e042a81c diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29 index b062f9b1847e..77cabd77a013 100644 --- a/metadata/md5-cache/sci-biology/consed-29 +++ b/metadata/md5-cache/sci-biology/consed-29 @@ -11,5 +11,5 @@ RESTRICT=fetch SLOT=0 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d533d3bc63ad3989cce879478db9de97 diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 index bcdeafebb005..f5be03f2afc3 100644 --- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 +++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.59.0:= dev-cpp/eigen:3 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.59.0:= dev-cpp/eigen:3 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Transcript assembly and differential expression/regulation for RNA-Seq EAPI=6 HOMEPAGE=http://cufflinks.cbcb.umd.edu/ @@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.59.0:= dev-cpp/eigen: SLOT=0 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4ad79d5b383bcb53a250a681604a4756 diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 index e32807dc75f0..6c965529cda3 100644 --- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 +++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 @@ -7,5 +7,5 @@ LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=aadd3cbbb875bbc0d53d08117691ad8e diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4 index 081fa214ee9d..5c94074e0ac1 100644 --- a/metadata/md5-cache/sci-biology/diya-1.0_rc4 +++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4 @@ -10,5 +10,5 @@ RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal SLOT=0 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:perl-module src_configure:perl-module src_compile:perl-module src_test:perl-module src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=5d4639d7c08c43e2c2208492508fd56c diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index 57d9973f111d..fc27edc9f860 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Applications from the CBS group EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4166ba28131fdf70907b31300aa4c08b diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index a75fc38ee5c2..eff2bd2371b4 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plp SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=ef491b452e56be12961f62b16961f4f1 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index 09bb7fe8c79a..8aeff7ffb626 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 233fdf92f0ec..28dc8ccf3836 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=9f8b2caa273f4ae3b0463e6de6782660 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index e26cbad46127..62e3150a5d0f 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=920906439fbc5278460201b23a615736 diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index dbdc1bc38e8c..6bcf469832d8 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-l SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d82c7c44ec76fa5d6165769a73e5df9a diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index b730d6dde227..7b3aa271b871 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=1b156bed7ea031aeb5464836dd987f18 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index 7ceecc814f82..429562106c8a 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=83d02ae22d4e1864669639d9289cd112 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index 96cb19266b84..5dcaa1cae91e 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=73b0c29964ea3506d18ef6b6c8df70e1 diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 index 36d189cbc7c9..b5532be0c10d 100644 --- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 +++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=b18db6d7a2159272c7b69d34a14dc9b5 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index 27af23dd0b61..18772ab9eaeb 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-l SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=84df94b7c4b0f044de45cef524cbf453 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index c8c0421588ea..37e617daa2a4 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=00620d36fbf4790dc2ecfb240ba9816c diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index b99133f3bafd..c59e3d0f837f 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein signature add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4cb685046b5a39b624eb3467b815c2c4 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index 9c6c26b50cbf..12d95e939210 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein structure add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=634d624be78f958ed7fca02e7dc43bd4 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index 79831c8ecba9..fae4a53c1fad 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Transmembrane protein display EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=e50220ee11093554b589c1f9f53e7c09 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index 4c787f765953..2a5e71c2291d 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz _eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:emboss-r2 -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d257de40bcdb33c0735daac8a5f15fda diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index b862e69164fe..bb9d854ee3e4 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -11,5 +11,5 @@ RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:emboss-r2 src_configure:emboss-r2 src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=99a47266a2a8f2fd0a874111491146e2 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1 b/metadata/md5-cache/sci-biology/eugene-4.1 index 78762a27fe15..e316f6ffde87 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1 +++ b/metadata/md5-cache/sci-biology/eugene-4.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/gd[png] media-libs/libpng:0= !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Eukaryotic gene predictor EAPI=5 HOMEPAGE=http://www.inra.fr/mia/T/EuGene/ @@ -10,5 +10,5 @@ RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1157/eugene-4.1.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=6f1638a54685839c739157c9f641b358 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d index 6eba48b4ea29..eb48e474a42e 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d +++ b/metadata/md5-cache/sci-biology/eugene-4.1d @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/gd[png] media-libs/libpng:0= !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor EAPI=6 HOMEPAGE=http://eugene.toulouse.inra.fr/ @@ -10,5 +10,5 @@ RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=8f5a68a22051f24d76cd43774022915b diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 index d997415313f0..7411bb106c5e 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/glib:2 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Generic tool for pairwise sequence comparison EAPI=6 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate @@ -11,5 +11,5 @@ REQUIRED_USE=test? ( utils ) SLOT=0 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=2efd53d13e6f08e4144477038f41e4af diff --git a/metadata/md5-cache/sci-biology/express-0.9.5-r1 b/metadata/md5-cache/sci-biology/express-0.9.5-r1 index 0ff103290e3a..d3dedc325d77 100644 --- a/metadata/md5-cache/sci-biology/express-0.9.5-r1 +++ b/metadata/md5-cache/sci-biology/express-0.9.5-r1 @@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools SLOT=0 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-0.9.5/express-0.9.5-src.tgz _eclass_exported_funcs=src_prepare:- src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=6d15a446bfc7659cceaabe3567001583 diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1 index c21ad17b0b24..fe5e59240bcd 100644 --- a/metadata/md5-cache/sci-biology/express-1.5.1 +++ b/metadata/md5-cache/sci-biology/express-1.5.1 @@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sy SLOT=0 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz _eclass_exported_funcs=src_prepare:cmake-utils src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=b71cdea630f32e2657b8152579eec606 diff --git a/metadata/md5-cache/sci-biology/fasta-35.4.10 b/metadata/md5-cache/sci-biology/fasta-35.4.10 index d7d7c593c4b5..fc54f117bf85 100644 --- a/metadata/md5-cache/sci-biology/fasta-35.4.10 +++ b/metadata/md5-cache/sci-biology/fasta-35.4.10 @@ -9,5 +9,5 @@ LICENSE=fasta SLOT=0 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta3/fasta-35.4.10.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bc70246741c824a5b11b9e292d26c372 diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e index 60f53243a309..d2c44f0961a5 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.5e +++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e @@ -9,5 +9,5 @@ LICENSE=fasta SLOT=0 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=7b46f81d2659e9120c49874e774b5ca0 diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.7 b/metadata/md5-cache/sci-biology/fasttree-2.1.7 index 079b6a4ba8b8..faf272564b90 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.7 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.7 @@ -10,5 +10,5 @@ REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.7.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.7.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.7.tar.gz _eclass_exported_funcs=src_unpack:- src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=20d72299931c8f8e092006a9b668182c diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8 index f9b524f44410..582343f2610a 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.8 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8 @@ -10,5 +10,5 @@ REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz _eclass_exported_funcs=src_unpack:- src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=f2b648d93a4c0ca58285574958cde15a diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 index e22e7fc969d8..aba193b7d7ed 100644 --- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 +++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 @@ -7,5 +7,5 @@ LICENSE=finchtv SLOT=0 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz _eclass_exported_funcs=src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=08355830f28d1052c2ab527b82a8dd68 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2 b/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2 index 05b47f768366..c51f5b86808c 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.3.6-r2 @@ -9,5 +9,5 @@ RESTRICT=mirror bindist strip SLOT=0 SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.3/fahclient_7.3.6-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.3/fahclient_7.3.6-64bit-release.tar.bz2 ) _eclass_exported_funcs=pkg_preinst:- pkg_postrm:- pkg_postinst:- pkg_setup:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee user e4b567c44272a719fabf53f0f885d3f7 versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee user e4b567c44272a719fabf53f0f885d3f7 versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=83224cd2d1ccfa8deb2e4fdbfd05ef7e diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4 b/metadata/md5-cache/sci-biology/foldingathome-7.4.4 index e9e862d4fb4f..e06c0cc33150 100644 --- a/metadata/md5-cache/sci-biology/foldingathome-7.4.4 +++ b/metadata/md5-cache/sci-biology/foldingathome-7.4.4 @@ -9,5 +9,5 @@ RESTRICT=mirror bindist strip SLOT=0 SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 ) _eclass_exported_funcs=pkg_preinst:- pkg_postrm:- pkg_postinst:- pkg_setup:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee user e4b567c44272a719fabf53f0f885d3f7 versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee user e4b567c44272a719fabf53f0f885d3f7 versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=58a4ef0b080ef67a97fe1c182f21f2c1 diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4 index 98447e9af32f..8fb3f40e8391 100644 --- a/metadata/md5-cache/sci-biology/gatk-2.4 +++ b/metadata/md5-cache/sci-biology/gatk-2.4 @@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:vcs-snapshot src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542 diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999 index cc496c67c699..9b9780f31eb6 100644 --- a/metadata/md5-cache/sci-biology/gatk-9999 +++ b/metadata/md5-cache/sci-biology/gatk-9999 @@ -8,5 +8,5 @@ LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:git-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=df4fa840e567320d0f100f0073200f23 diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index 4b417abd6e5c..727987a62198 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install postinst prepare test -DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences EAPI=4 HOMEPAGE=http://bayesweb.wadsworth.org/gibbs/gibbs.html @@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=e28918ff8ca46c8b8254e4e36f8d0bcf diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 index f9e4c246efa3..42c60a75b641 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 +++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 @@ -8,5 +8,5 @@ RDEPEND=app-shells/tcsh SLOT=0 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=fda3f095f34da47d12e170b3c40dfd67 diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b index 11e170f76e4c..741f2ef68386 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02b +++ b/metadata/md5-cache/sci-biology/glimmer-3.02b @@ -8,5 +8,5 @@ RDEPEND=app-shells/tcsh sci-biology/elph SLOT=0 SRC_URI=http://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=1a77df881e0fba38094c344e97b529a5 diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 index 6d6f62f025f0..42c12f2c85cd 100644 --- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 +++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 @@ -7,5 +7,5 @@ LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz _eclass_exported_funcs=src_unpack:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=addae30e588a0c7a05baea53d553af0f diff --git a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 index f3f171f028b4..9c0d465ef9a7 100644 --- a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 +++ b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 @@ -7,5 +7,5 @@ LICENSE=gmap SLOT=0 SRC_URI=http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-12-31.v5.tar.gz _eclass_exported_funcs=- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=398e7f0670f5bd07e45f2780d7fe03cf diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 index 4ec0cc203005..13115d73e5ab 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 @@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=03afdad422e8ac673016b7bbfd574c75 diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 index 88281f3ac8a3..845a592aa343 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 @@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=5d560004d41472d184dd71e7ea06a04c diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 index 9d91d1793383..6bcef12f896f 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=4 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-cpp.zip _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=62b1fc794a90a87e0f80ab795108ee3c diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 index 267d2aa7e40b..ac20b204f61f 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=4 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -9,5 +9,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-cpp.zip _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=2599766d541e65f4acfb94c4fa4e974e diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 index 8cb7117f0ee5..91f73ac88e57 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=5 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -10,5 +10,5 @@ RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip _eclass_exported_funcs=src_prepare:- src_configure:autotools-utils src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=416e64f4b9f8268c7d795c45e35bacf7 diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1 index 2a09ea4bdf9e..5fc7429cd447 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r1 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A subset seed design tool for DNA sequence alignment EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php @@ -8,5 +8,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=ce77e1e27bd52fed2fd2af52744d6288 diff --git a/metadata/md5-cache/sci-biology/last-230 b/metadata/md5-cache/sci-biology/last-230 index 5a199ce38e42..4f37d25a6490 100644 --- a/metadata/md5-cache/sci-biology/last-230 +++ b/metadata/md5-cache/sci-biology/last-230 @@ -8,5 +8,5 @@ LICENSE=GPL-3 SLOT=0 SRC_URI=http://last.cbrc.jp/archive/last-230.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=5da658e6779591b0d1b9ad3413a0e7b2 diff --git a/metadata/md5-cache/sci-biology/last-299 b/metadata/md5-cache/sci-biology/last-299 index ca75ed96b0f4..19e5ff761f02 100644 --- a/metadata/md5-cache/sci-biology/last-299 +++ b/metadata/md5-cache/sci-biology/last-299 @@ -9,5 +9,5 @@ LICENSE=GPL-3 SLOT=0 SRC_URI=http://last.cbrc.jp/last-299.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=6e1f0bdb917742bc0699b6a60a326081 diff --git a/metadata/md5-cache/sci-biology/mafft-7.050 b/metadata/md5-cache/sci-biology/mafft-7.050 index f930badad491..378b2c3f239e 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.050 +++ b/metadata/md5-cache/sci-biology/mafft-7.050 @@ -8,5 +8,5 @@ LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=10435da51da43a9bd92e9e337fb92445 diff --git a/metadata/md5-cache/sci-biology/mafft-7.215 b/metadata/md5-cache/sci-biology/mafft-7.215 index 6535451237ca..29f40ef671ed 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.215 +++ b/metadata/md5-cache/sci-biology/mafft-7.215 @@ -8,5 +8,5 @@ LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=26a81f4b6b0ff69fbc3eba8869681491 diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305 index 10dc8552aaba..21ad5aab6fc2 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.305 +++ b/metadata/md5-cache/sci-biology/mafft-7.305 @@ -8,5 +8,5 @@ LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4701ed0cbf5fff28c6de7c8b01e134af diff --git a/metadata/md5-cache/sci-biology/mammoth-1.0-r1 b/metadata/md5-cache/sci-biology/mammoth-1.0-r1 index dbff2f11c781..70b8b402f468 100644 --- a/metadata/md5-cache/sci-biology/mammoth-1.0-r1 +++ b/metadata/md5-cache/sci-biology/mammoth-1.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare setup -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 virtual/fortran +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 virtual/fortran DESCRIPTION=MAtching Molecular Models Obtained from THeory EAPI=5 HOMEPAGE=http://ub.cbm.uam.es/software.php @@ -10,5 +10,5 @@ RESTRICT=fetch SLOT=0 SRC_URI=mammoth-1.0-src.tgz _eclass_exported_funcs=pkg_setup:fortran-2 src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d772b19e1240a53cc095d4d938da012d diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 index 7d9842a394ad..fd7f6b386664 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -9,5 +9,5 @@ RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=39ffb0025210075a8d7d7f6f81f8da56 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 index d0cf4ba44211..f9775735c730 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/freeglut sys-libs/zlib !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -9,5 +9,5 @@ RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=dee50558d10e75ff9e96f4c3f177c55f diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312 index 6a571a6c6d41..5d42a5cbf966 100644 --- a/metadata/md5-cache/sci-biology/mcl-08.312 +++ b/metadata/md5-cache/sci-biology/mcl-08.312 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=4 HOMEPAGE=http://micans.org/mcl/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135 index 2a7af42a22df..6211eb2f92bf 100644 --- a/metadata/md5-cache/sci-biology/mcl-12.135 +++ b/metadata/md5-cache/sci-biology/mcl-12.135 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=4 HOMEPAGE=http://micans.org/mcl/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index 3e446706c07d..e69efc453a29 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=6 HOMEPAGE=http://micans.org/mcl/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=3429c68609b6c70e047d577379f68f97 diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 index ee81f1f8fc2d..8888f414c829 100644 --- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 +++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare setup test -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=The MEME/MAST system - Motif discovery and search EAPI=6 HOMEPAGE=http://meme-suite.org/tools/meme @@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz _eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_test:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 perl-functions a884a53a49bebbf90cb29dd191f73613 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 perl-functions a884a53a49bebbf90cb29dd191f73613 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=a4080439675628436c06de8db9f59c6e diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index c2da283b0807..034a20172685 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina EAPI=6 HOMEPAGE=http://www.chevreux.org/projects_mira.html @@ -10,5 +10,5 @@ RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4e9fc8a550640febbc0b71544c16618c diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index 2966f13714ea..f43b4942fd71 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -7,5 +7,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz _eclass_exported_funcs=src_unpack:vcs-snapshot src_configure:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e _md5_=e8bd620c581af022566733e65d479626 diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 index f6993e5e2a1e..602d16db161a 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 +++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 @@ -10,5 +10,5 @@ RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran SLOT=0 SRC_URI=http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=abcc03749068210ba5c44ba0b4a85e27 diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 index fe64435a05fb..58559def217e 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a082c9b1f1b5f9fa9b85e23eb7009a6d diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 index dc1daf89cb4f..757aa1890911 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a944448f568e57bb9f221cd1f437ab09 diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23 index 6eb04ff11bf6..fd528a76125e 100644 --- a/metadata/md5-cache/sci-biology/mummer-3.23 +++ b/metadata/md5-cache/sci-biology/mummer-3.23 @@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh dev-lang/perl SLOT=0 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz _eclass_exported_funcs=src_configure:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=c256f298b416306c1be7005e7877f7b9 diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31 index 13ca6f8a4ef4..ac922516d483 100644 --- a/metadata/md5-cache/sci-biology/muscle-3.8.31 +++ b/metadata/md5-cache/sci-biology/muscle-3.8.31 @@ -8,5 +8,5 @@ RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=500ff424aff8c56744362bc87a3ff285 diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 index 0e816e618abd..ee3608c82b24 100644 --- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 +++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 @@ -10,5 +10,5 @@ RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontc SLOT=0 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=770169ddfbcde7c5fbe57bff9b10ca14 diff --git a/metadata/md5-cache/sci-biology/paml-4.4c-r1 b/metadata/md5-cache/sci-biology/paml-4.4c-r1 index 94e4c241dbd0..6928ba5926d2 100644 --- a/metadata/md5-cache/sci-biology/paml-4.4c-r1 +++ b/metadata/md5-cache/sci-biology/paml-4.4c-r1 @@ -7,5 +7,5 @@ LICENSE=free-noncomm SLOT=0 SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=c46d709378282d4ccbb567aaa00ee01a diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103 index 24af8f892a26..42b8b331bb04 100644 --- a/metadata/md5-cache/sci-biology/picard-1.103 +++ b/metadata/md5-cache/sci-biology/picard-1.103 @@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons SLOT=0 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2 _eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:java-pkg-2 src_configure:java-ant-2 src_compile:java-pkg-2 src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=09627e6bb74ee9997324bde01a56bcbd diff --git a/metadata/md5-cache/sci-biology/plink-1.07-r1 b/metadata/md5-cache/sci-biology/plink-1.07-r1 index 2c9ce45262fd..f8731f083fd3 100644 --- a/metadata/md5-cache/sci-biology/plink-1.07-r1 +++ b/metadata/md5-cache/sci-biology/plink-1.07-r1 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib lapack? ( virtual/lapack ) SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=b659cc5ab8af123ceaf15f1349214345 diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 index 7835bdf984bb..0b92b1f09020 100644 --- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 +++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 @@ -9,5 +9,5 @@ RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=570249dc23feeff7b47b3e81df358196 diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1 index 162d09bb90f8..5e599f1171d2 100644 --- a/metadata/md5-cache/sci-biology/poa-2-r1 +++ b/metadata/md5-cache/sci-biology/poa-2-r1 @@ -8,5 +8,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=4f0b8d6c2192465644af4890a995d48a diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.5 b/metadata/md5-cache/sci-biology/primer3-2.3.5 index ccf2fa7bbff5..2ad6cb3f0bc9 100644 --- a/metadata/md5-cache/sci-biology/primer3-2.3.5 +++ b/metadata/md5-cache/sci-biology/primer3-2.3.5 @@ -8,5 +8,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/primer3/2.3.5/primer3-2.3.5.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=b7f3f26331b5241399cbf40ac9eeeabc diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.6 b/metadata/md5-cache/sci-biology/primer3-2.3.6 index 114f36346786..31d26a849d31 100644 --- a/metadata/md5-cache/sci-biology/primer3-2.3.6 +++ b/metadata/md5-cache/sci-biology/primer3-2.3.6 @@ -8,5 +8,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/primer3/2.3.6/primer3-src-2.3.6.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=e95de8dec7345b06ff7fac5c6c009d53 diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7 b/metadata/md5-cache/sci-biology/primer3-2.3.7 index 9610b6d82971..bcd0f5818c56 100644 --- a/metadata/md5-cache/sci-biology/primer3-2.3.7 +++ b/metadata/md5-cache/sci-biology/primer3-2.3.7 @@ -8,5 +8,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=8b3d4a5940e96102e289acad426724d9 diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1 index c9a6ca60ab0d..a6ee7495187b 100644 --- a/metadata/md5-cache/sci-biology/probcons-1.12-r1 +++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1 @@ -8,5 +8,5 @@ RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot SLOT=0 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=19a24bd3c543d599d5b3392e66b7022e diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.39 b/metadata/md5-cache/sci-biology/profphd-1.0.39 index 1be0637d90eb..a5371cdb0541 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.39 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.39 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profph SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.39.tar.xz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=8e866cc812e134cdc7a7837e5b60aa21 diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.40 b/metadata/md5-cache/sci-biology/profphd-1.0.40 index ea9749f7f150..3dfbb4062603 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.40 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.40 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profph SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.40.tar.xz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=b641a6cfd444fa4b83d5963246948636 diff --git a/metadata/md5-cache/sci-biology/psipred-3.2.1 b/metadata/md5-cache/sci-biology/psipred-3.2.1 index a3d2a1004835..2252370e0bba 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.2.1 +++ b/metadata/md5-cache/sci-biology/psipred-3.2.1 @@ -9,5 +9,5 @@ RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi- SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred321.tar.gz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=bf7aa50ff789d669fe4846e0e41828d7 diff --git a/metadata/md5-cache/sci-biology/psipred-3.3 b/metadata/md5-cache/sci-biology/psipred-3.3 index 25b75ee103d3..f42dfd04cb57 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.3 +++ b/metadata/md5-cache/sci-biology/psipred-3.3 @@ -9,5 +9,5 @@ RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi- SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.3.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=d719359ecbbd5c0825e93788cc4f0af1 diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4 index fbb7770840bf..60128b6f082e 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.4 +++ b/metadata/md5-cache/sci-biology/psipred-3.4 @@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb s SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=671e20dbd509ebdd9e9c492e2c53b6a1 diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5 index db409c6f5430..57c9a61d33f9 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.5 +++ b/metadata/md5-cache/sci-biology/psipred-3.5 @@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb s SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 prefix df8265631f8bf5f5df387e9b987121f9 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=671e20dbd509ebdd9e9c492e2c53b6a1 diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6 index 77035e0976cc..1e4973f27fcf 100644 --- a/metadata/md5-cache/sci-biology/raxml-7.2.6 +++ b/metadata/md5-cache/sci-biology/raxml-7.2.6 @@ -9,5 +9,5 @@ REQUIRED_USE=cpu_flags_x86_sse3 SLOT=0 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=f2b8e0b4e5701d9b20bcbf9151c9b868 diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 index 41c8b0ffad7b..5e83eed1bb6c 100644 --- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 +++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 @@ -9,5 +9,5 @@ RDEPEND=dev-libs/boost SLOT=0 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=7aa6de8741afab9d848f4cbada44c7ad diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 index 712aff93340c..cc16b32ac693 100644 --- a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 +++ b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-0.1.19.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=02fe0265ea3255fc935c450795fd02d7 diff --git a/metadata/md5-cache/sci-biology/samtools-1.0 b/metadata/md5-cache/sci-biology/samtools-1.0 index d2bafdbf30ce..cacd31f077ba 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.0 +++ b/metadata/md5-cache/sci-biology/samtools-1.0 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a1815250c2526f494d3a289853305af7 diff --git a/metadata/md5-cache/sci-biology/samtools-1.0-r1 b/metadata/md5-cache/sci-biology/samtools-1.0-r1 index 45891ed65b99..82e595e0d572 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.0-r1 +++ b/metadata/md5-cache/sci-biology/samtools-1.0-r1 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=eafcbb12116c6dc7cafa2019c1f59a6b diff --git a/metadata/md5-cache/sci-biology/samtools-1.1 b/metadata/md5-cache/sci-biology/samtools-1.1 index 205019634dcf..8576bccb0daf 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.1 +++ b/metadata/md5-cache/sci-biology/samtools-1.1 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.1.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=6679f9bbda03dfce786745d678c7aa01 diff --git a/metadata/md5-cache/sci-biology/samtools-1.2 b/metadata/md5-cache/sci-biology/samtools-1.2 index ba24af972cf5..9d596134de7f 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.2 +++ b/metadata/md5-cache/sci-biology/samtools-1.2 @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.2.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=bf3c772addb118c6cad71a486f0a0cab diff --git a/metadata/md5-cache/sci-biology/samtools-1.3-r1 b/metadata/md5-cache/sci-biology/samtools-1.3-r1 index c0cfc38c1fa8..c87f63081b03 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.3-r1 +++ b/metadata/md5-cache/sci-biology/samtools-1.3-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile install prepare test -DEPEND=sys-libs/ncurses:0= =sci-libs/htslib-1.3* dev-lang/perl virtual/pkgconfig !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/ncurses:0= =sci-libs/htslib-1.3* dev-lang/perl virtual/pkgconfig >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats EAPI=6 HOMEPAGE=http://www.htslib.org/ @@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.3.tar.bz2 _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=1199335ae2f11b7bcd30d9cdd3045a34 diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5 index 9bc1e8721c98..04c43bbf127c 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.3.5 +++ b/metadata/md5-cache/sci-biology/seaview-4.3.5 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11 SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4 index d38d22e513e0..82ceecd3a4bb 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.5.4 +++ b/metadata/md5-cache/sci-biology/seaview-4.5.4 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11 SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.6 b/metadata/md5-cache/sci-biology/seaview-4.6 index 685307ffdd08..fb7b3a176420 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.6 +++ b/metadata/md5-cache/sci-biology/seaview-4.6 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11 SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=1a6723f1ab0e67cc0d63dd54a902900f diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 index d937eb08b131..1b00e890cd64 100644 --- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 +++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 @@ -10,5 +10,5 @@ REQUIRED_USE=python_targets_python2_7 cpu_flags_x86_sse4_1 SLOT=1.4 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:- -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=25cddcfb0d93a72423c977babe3d9edc diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 index 3636735ccc48..6e8a9b0b680e 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 @@ -11,5 +11,5 @@ REQUIRED_USE=doc? ( python_targets_python2_7 ) test? ( python_targets_python2_7 SLOT=0 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz _eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:- src_test:cmake-utils src_install:- -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=9803690e80de31f36ccc9bd7b1fadad5 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.0.1 b/metadata/md5-cache/sci-biology/shrimp-2.0.1 index 77995590d6b0..05600435d2fa 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.0.1 +++ b/metadata/md5-cache/sci-biology/shrimp-2.0.1 @@ -10,5 +10,5 @@ RDEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_0_1.src.tar.gz _eclass_exported_funcs=pkg_setup:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=33caa30e4cdcb3e86f4b1be8c6c30c46 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3 index 063fdf668bde..01b51b023c79 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.2.3 +++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3 @@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz _eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=98a7a2b9765ad5e245b1b7b9be67060b diff --git a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 index 728698c248dd..f65c891db3b8 100644 --- a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 +++ b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A library and API for manipulating large SNP datasets EAPI=6 HOMEPAGE=http://www.birc.au.dk/~mailund/SNPFile/ @@ -10,5 +10,5 @@ RDEPEND=dev-libs/boost:= SLOT=0 SRC_URI=http://www.birc.au.dk/~mailund/SNPFile/download/snpfile-2.0.1.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=7c64014825a157024d03614c037abcfc diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1 index 06368ad8703c..91a574eaab94 100644 --- a/metadata/md5-cache/sci-biology/stride-20011129-r1 +++ b/metadata/md5-cache/sci-biology/stride-20011129-r1 @@ -8,5 +8,5 @@ RESTRICT=mirror bindist SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2 _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=d73db26f06440dc2c2a1e25befe5d490 diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 index cfd244b785e3..528e444eb322 100644 --- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 +++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 @@ -9,5 +9,5 @@ RDEPEND=sci-biology/clustalw sci-chemistry/tm-align SLOT=0 SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_11.00.8cbe486/T-COFFEE_distribution_Version_11.00.8cbe486.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a1771c6229fc2548e173d5592657c1b5 diff --git a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 b/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 index 9007aa080cfb..2ef7ff96bcd2 100644 --- a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 +++ b/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 @@ -10,5 +10,5 @@ RDEPEND=sci-biology/clustalw sci-chemistry/tm-align virtual/fortran SLOT=0 SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_9.03.r1318/T-COFFEE_distribution_Version_9.03.r1318.tar.gz _eclass_exported_funcs=pkg_setup:fortran-2 src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=369169186d5a67fbb6f2de9ebbc8fd6e diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 index 81c77d2cd134..f4dcbd595103 100644 --- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 +++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare setup -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2 EAPI=6 HOMEPAGE=https://ccb.jhu.edu/software/tophat/ @@ -11,5 +11,5 @@ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=67bcf40eef080ccf999e7cb3db1347e1 diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 index 88b9c393bb26..51b2d8ce77ae 100644 --- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 +++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 @@ -11,5 +11,5 @@ RESTRICT=test SLOT=0 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz _eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=6f933fde60eb23f0e50fbe5e137bbc7e diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index 03d309863cd7..929cb4d5b006 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=x11-libs/wxGTK:3.0[X] !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A phylogenetic tree viewer EAPI=5 HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ @@ -9,5 +9,5 @@ RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz _eclass_exported_funcs=src_prepare:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee wxwidgets 04e063b0eff26daaea83d859dd9d6e05 +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee wxwidgets 04e063b0eff26daaea83d859dd9d6e05 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2 b/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2 index c60858ed1619..4f58a6912ace 100644 --- a/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2 +++ b/metadata/md5-cache/sci-biology/trnascan-se-1.23-r2 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl SLOT=0 SRC_URI=mirror://gentoo/trnascan-se-1.23.tar.bz2 _eclass_exported_funcs=src_prepare:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=1c3eff7aa970b6648343a3cd71ac2547 diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31 index 448d293b5a6e..2da016c9b4f8 100644 --- a/metadata/md5-cache/sci-biology/trnascan-se-1.31 +++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz _eclass_exported_funcs=src_unpack:unpacker src_prepare:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 _md5_=f5e80fc8c3f0924edd45360e54272906 diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40 index 1cda5a30d37a..29a360babbdd 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40 @@ -9,5 +9,5 @@ LICENSE=public-domain SLOT=0 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:cmake-utils src_compile:cmake-utils src_test:cmake-utils src_install:cmake-utils -_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=cmake-utils a69f3a404abc4ade0a99e523f51b989d epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0 diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 index c9dc85af3f68..b0ef8eb4daa9 100644 --- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 +++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 @@ -11,5 +11,5 @@ REQUIRED_USE=server? ( mysql ) SLOT=0 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip _eclass_exported_funcs=pkg_prerm:webapp pkg_postinst:- pkg_setup:webapp src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee webapp a76ebd3cb5649737496e8238992dd7ca +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee webapp a76ebd3cb5649737496e8238992dd7ca _md5_=e8bc8c4496d6c751b8f8452324e059f4 diff --git a/metadata/md5-cache/sci-biology/unafold-3.8 b/metadata/md5-cache/sci-biology/unafold-3.8 index 3695a3a1cbc6..2bc0395338cd 100644 --- a/metadata/md5-cache/sci-biology/unafold-3.8 +++ b/metadata/md5-cache/sci-biology/unafold-3.8 @@ -7,5 +7,5 @@ LICENSE=unafold SLOT=0 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2 _eclass_exported_funcs=src_prepare:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=ebd02415ef212687d4df041d88c3a06a diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1 index 56b80ce666bb..756c855e5644 100644 --- a/metadata/md5-cache/sci-biology/unafold-3.8-r1 +++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1 @@ -8,5 +8,5 @@ LICENSE=unafold SLOT=0 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2 _eclass_exported_funcs=src_prepare:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=f6e357557efc2f86eab0adadd32142ce diff --git a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 index 672721a950c5..6f982280cef5 100644 --- a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 +++ b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 @@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl !sci-biology/ncbi-tools++ SLOT=0 SRC_URI=ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/12_0_0/ncbi_cxx--12_0_0.tar.gz _eclass_exported_funcs=src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=bc882208706b78e231cbfd78c7b5799e diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2 index 27e280622ef8..2141c9eefc46 100644 --- a/metadata/md5-cache/sci-biology/vaal-46233-r2 +++ b/metadata/md5-cache/sci-biology/vaal-46233-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Algorithm for detecting SNPs, indels, and other polymorphisms EAPI=6 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd/ @@ -10,5 +10,5 @@ RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg SLOT=0 SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=93fba567a04e46611159af4ccc822131 diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14 index 9ff3edbdda25..159313e430e4 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.14 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for working with VCF (Variant Call Format) files EAPI=6 HOMEPAGE=http://vcftools.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 perl-functions a884a53a49bebbf90cb29dd191f73613 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 perl-functions a884a53a49bebbf90cb29dd191f73613 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=c40169dc993f3444a3e2f41ad69a920d diff --git a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 index f81b7f90f56a..5cb19a89243e 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 +++ b/metadata/md5-cache/sci-biology/velvet-1.0.18-r1 @@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.0.18.tgz _eclass_exported_funcs=pkg_postinst:- src_prepare:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=a119a595dc7b0d122295010a78b3aa06 diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10 index 1b9429abc909..cec6c1e924e7 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.2.10 +++ b/metadata/md5-cache/sci-biology/velvet-1.2.10 @@ -9,5 +9,5 @@ LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=ac1199b35ef7b8a3ec440c5ce27c91a3 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 index 1daa35d384de..bf56de057cc9 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ @@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed distutils-r1 039ba10839816478cfb070fdeb053906 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed distutils-r1 039ba10839816478cfb070fdeb053906 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 _md5_=1e58c830b49ced05ae9960fcc2dead13 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index 5fd92115654c..830a7807a16c 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ @@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz _eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed distutils-r1 039ba10839816478cfb070fdeb053906 epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d libtool 48b1b9f6194d2842456514d1184ca72e ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 autotools-utils 042d779bc872564b26c4e5cf018db8ed distutils-r1 039ba10839816478cfb070fdeb053906 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 0236be304ee52e7f179ed2f337075515 multiprocessing 284a473719153462f3e974d86c8cb81c perl-functions a884a53a49bebbf90cb29dd191f73613 perl-module 3485abc93409cd3433ec6a0df5f64867 python-r1 0c067f080a047742ffac024b16895b45 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 xdg-utils b9389dfad0ee8f8e0b2a41b79fcf7120 _md5_=b2a6486af275e75c6365ab7eeba1e0bd diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 index 3f19ee8acf6e..61a9865c76f1 100644 --- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 +++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 @@ -10,5 +10,5 @@ RDEPEND=x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4pe SLOT=0 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2 _eclass_exported_funcs=src_prepare:- src_configure:- src_compile:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=6ebc94c9eb0083edd0308af8a336afe0 diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha index 4fd142ac55ec..1acfe245a85d 100644 --- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha +++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha @@ -10,5 +10,5 @@ RDEPEND=~sci-biology/hmmer-2.3.2 SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz _eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:- -_eclasses_=epatch 122e1264e67c4f59a1482f2095e0b35d estack 5ac2a138d0b33354b764d84f9e835db8 eutils 1ef31aee2bd63ffbfcae8a1843c9208d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 +_eclasses_=epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0 _md5_=3fc50009d15dddcf126bbf0735404920 diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2 index d708786b2231..9fa879b31d9a 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r2 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=dmalloc? ( dev-libs/dmalloc ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/ @@ -10,5 +10,5 @@ RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz _eclass_exported_funcs=src_prepare:- src_configure:- -_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool 48b1b9f6194d2842456514d1184ca72e multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee +_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 libtool e32ea84bf82cf8987965b574672dba93 multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3 |