diff options
Diffstat (limited to 'sci-biology/mammoth')
| -rw-r--r-- | sci-biology/mammoth/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch | 21 | ||||
| -rw-r--r-- | sci-biology/mammoth/mammoth-1.0-r1.ebuild | 43 | ||||
| -rw-r--r-- | sci-biology/mammoth/metadata.xml | 5 |
4 files changed, 70 insertions, 0 deletions
diff --git a/sci-biology/mammoth/Manifest b/sci-biology/mammoth/Manifest new file mode 100644 index 000000000000..584405eb5350 --- /dev/null +++ b/sci-biology/mammoth/Manifest @@ -0,0 +1 @@ +DIST mammoth-1.0-src.tgz 319617 SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2 diff --git a/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch b/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch new file mode 100644 index 000000000000..63bf9f246750 --- /dev/null +++ b/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch @@ -0,0 +1,21 @@ +http://gcc.gnu.org/onlinedocs/gcc-4.2.2/gfortran/SYSTEM.html#SYSTEM + +This intrinsic is provided in both subroutine and function forms; +however, only one form can be used in any given program unit. + +--- src/6apply_rot_tras.f.orig 2007-12-10 00:51:35.000000000 -0800 ++++ src/6apply_rot_tras.f 2007-12-10 00:55:07.000000000 -0800 +@@ -47,11 +47,11 @@ + endif + + +- call system ('echo $PWD > junk1') ++ i = system ('echo $PWD > junk1') + open(unit=21,file='junk1') + read(21,'(a340)', end=7) path + 7 close(21) +- call system ('rm -f junk1') ++ i = system ('rm -f junk1') + + c write(6,*)'my path is ', path + c write(6,*)tras1,tras2,tras3, diff --git a/sci-biology/mammoth/mammoth-1.0-r1.ebuild b/sci-biology/mammoth/mammoth-1.0-r1.ebuild new file mode 100644 index 000000000000..750d95dd894b --- /dev/null +++ b/sci-biology/mammoth/mammoth-1.0-r1.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit autotools eutils fortran-2 flag-o-matic toolchain-funcs + +MY_P="${P}-src" + +DESCRIPTION="MAtching Molecular Models Obtained from THeory" +HOMEPAGE="http://ub.cbm.uam.es/software.php" +SRC_URI="${MY_P}.tgz" + +LICENSE="mammoth" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RESTRICT="fetch" + +S=${WORKDIR}/${MY_P} + +pkg_nofetch() { + einfo "Download the source code for MAMMOTH from" + einfo "${HOMEPAGE}" + einfo "and place it in ${DISTDIR}" +} + +src_prepare() { + # Broken with gfortran without this patch + epatch "${FILESDIR}"/${PV}-consistent-system-intrinsic.patch + + case $(tc-getFC) in + g77) append-fflags -ffixed-line-length-none ;; + gfortran) append-fflags -ffixed-line-length-none ;; + esac + + # It comes with a custom-modified configure for some reason, + # which forces you to pass in the Fortran compiler as a parameter. + # Let's do the standard stuff instead. + eautoreconf +} diff --git a/sci-biology/mammoth/metadata.xml b/sci-biology/mammoth/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/mammoth/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> |