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path: root/sci-biology
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* sci-biology/samtools: drop 0.1.20-r4David Seifert2023-05-053-280/+0
* sci-biology/bedtools: fix gcc 13 buildDavid Seifert2023-04-182-0/+26
* sci-biology/biopython: drop 1.79David Seifert2023-04-162-63/+0
* sci-biology/pysam: fix build with cython 3David Seifert2023-04-082-0/+30
* sci-biology/bcftools: drop 1.16David Seifert2023-04-062-43/+0
* sci-biology/samtools: drop 1.16.1David Seifert2023-04-062-48/+0
* sci-biology/pysam: drop 0.20.0David Seifert2023-04-062-70/+0
* sci-biology/pysam: add 0.21.0David Seifert2023-04-062-0/+67
* sci-biology/pysam: add 9999David Seifert2023-03-301-0/+72
* sci-biology/bcftools: add 1.17David Seifert2023-03-302-0/+43
* sci-biology/samtools: add 1.17David Seifert2023-03-302-0/+48
* sci-biology/bowtie: add 2.5.1Andrew Ammerlaan2023-02-242-0/+74
* sci-biology/biopython: add 1.81Andrew Ammerlaan2023-02-242-0/+62
* sci-biology/biopandas: add 0.4.1Andrew Ammerlaan2023-02-243-2/+31
* sci-biology/HTSeq: enable py3.11Andrew Ammerlaan2023-02-243-6/+3
* sci-biology/bcftools: drop 1.15.1David Seifert2023-02-192-43/+0
* sci-biology/samtools: drop 1.15.1David Seifert2023-02-192-48/+0
* sci-biology/pysam: drop 0.19.1David Seifert2023-02-192-67/+0
* sci-biology/pysam: add 0.20.0David Seifert2023-02-192-0/+70
* sci-biology/augustus: move remote-id inside upstream blockPetr Vaněk2023-02-061-1/+3
* sci-biology/augustus: add github remote-idSam James2023-02-041-0/+1
* sci-biology/augustus: add lpsolve subslot depSam James2023-02-041-2/+2
* sci-biology/consed: treecleanJakov Smolić2023-01-277-1688/+0
* sci-biology/phrap: treecleanJakov Smolić2023-01-274-156/+0
* sci-biology/phred: treecleanJakov Smolić2023-01-275-173/+0
* */*: remove py3.8 from PYTHON_COMPATDavid Seifert2023-01-149-18/+18
* sci-biology/bcftools: add 1.16David Seifert2022-12-272-0/+43
* sci-biology/samtools: add 1.16.1David Seifert2022-12-272-0/+48
* sci-biology/seqan: drop 2.4.0-r1Andreas Sturmlechner2022-12-196-161/+0
* sci-biology/hmmer: expose XSI pthread_setconcurrency() prototypesDavid Seifert2022-11-201-1/+4
* sci-biology/tree-puzzle: regenerate configure script for clang 16David Seifert2022-11-193-15/+368
* sci-biology/unafold: fix clang 16 buildDavid Seifert2022-10-233-9/+831
* sci-biology/poa: fix clang 16 buildDavid Seifert2022-10-232-1/+76
* sci-biology/eugene: fix clang 16 buildDavid Seifert2022-10-232-0/+23
* sci-biology/uchime: align longdescription opening and closing tagsPetr Vaněk2022-10-201-9/+9
* sci-biology/trnascan-se: fix build w/ clang16, pass -std=gnu89Ionen Wolkens2022-10-192-1/+65
* sci-biology/stride: fix build w/ upcoming clang16Ionen Wolkens2022-10-152-1/+17
* sci-biology/treeviewx: fix StaticSrcUriSam James2022-10-011-2/+2
* sci-biology/phred: use PV in SRC_URISam James2022-09-221-1/+1
* sci-biology/express: remove stale boost lower boundsDavid Seifert2022-09-041-2/+2
* sci-biology/augustus: respect CC, CXXSam James2022-09-031-2/+5
* sci-biology/augustus: fix Boost depSam James2022-09-031-6/+6
* sci-biology/bioperl: use <pkg> tags in metadata.xmlPetr Vaněk2022-08-261-3/+3
* sci-biology/pals: use HTTPSMichael Mair-Keimberger2022-08-231-2/+2
* sci-biology/muscle: use HTTPSMichael Mair-Keimberger2022-08-231-3/+3
* sci-biology/iedera: use HTTPSMichael Mair-Keimberger2022-08-231-3/+3
* sci-biology/trf: use HTTPSMichael Mair-Keimberger2022-08-231-2/+2
* sci-biology/biosql: use HTTPSMichael Mair-Keimberger2022-08-231-2/+2
* sci-biology/exonerate: use HTTPSMichael Mair-Keimberger2022-08-231-1/+1
* sci-biology/transfac: treecleanJakov Smolić2022-08-093-59/+0