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* sci-libs/pcl: port changes from sci-libs/pcl-1.12.1-r1Bernd Waibel2022-11-121-6/+30
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/27977 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/pcl: fix several issuesBernd Waibel2022-11-123-6/+84
| | | | | | | | | | | | | | | | | | | | | | | | | - enable cuda sandbox to avoid sandbox violation, #869674 - patch the code for several installation directories to conform to FHS. This is just a hack and should be done using GNUInstallDirs and provided upstream to solve it properly, #853886 - add a dependency on virtual/latex-base to avoid an additional QA issue on latex not found, because the doxyfile uses LaTeX by default. Also depend on doxygen[dot] to avoid a cmake warning about missing doxygen component - change test related cmake option to new value to avoid undefined cmake variables, #738996 - depend on dev-python/sphinx_rtd_theme to properly build tutorial docs with USE=tutorials, #849002 - restrict test, because it needs the gtest sources to be provided, the package alone seems not be enough. - fix hardcoded path for cmake files to be installed into /usr/share/cmake/ Closes: https://bugs.gentoo.org/869674 Closes: https://bugs.gentoo.org/853886 Closes: https://bugs.gentoo.org/738996 Closes: https://bugs.gentoo.org/849002 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: add 0.3.21Michael Orlitzky2022-11-123-0/+434
| | | | | | | | | | I had to rebase the loongarch patch, and removed an old workaround for FFLAGS="-fcheck=bounds" in the test suite, but other than that a standard update. Bug: https://bugs.gentoo.org/726474 Closes: https://bugs.gentoo.org/878883 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 amd64, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 ppc64, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 hppa, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 ppc, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 x86, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 arm, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 arm64, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: add 3.11Sam James2022-11-112-0/+104
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pdal: Keyword 2.4.3 arm64, #880759Arthur Zamarin2022-11-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/caffe2: Fix installation for Gentoo PrefixMarek Behún2022-11-102-6/+6
| | | | | | | | | | | Add EPREFIX to the TORCH_INSTALL_LIB_DIR and LIBSHM_INSTALL_LIB_SUBDIR library directories in src_configure() and use the ED instead of D variable in src_install() to fix the installation when installing in Gentoo Prefix. Signed-off-by: Marek Behún <kabel@kernel.org> Closes: https://github.com/gentoo/gentoo/pull/28208 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/onnx: Fix install phase for Gentoo PrefixMarek Behún2022-11-101-2/+2
| | | | | | | | Use the ED instead of D variable in src_install() to fix the installation when installing in Gentoo Prefix. Signed-off-by: Marek Behún <kabel@kernel.org> Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/inchi: fix build w/ clang16, install ixa.hIonen Wolkens2022-11-081-4/+4
| | | | | | | | | Also add the lacking quotes around tc-getCC/CXX. Just quickfixes, ebuild feels rather fragile. Closes: https://bugs.gentoo.org/834488 Closes: https://bugs.gentoo.org/874696 Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
* sci-libs/gsl: update LICENSEAndrew Ammerlaan2022-11-081-1/+1
| | | | | Closes: https://bugs.gentoo.org/880281 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn: Remove oldMichał Górny2022-11-075-238/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikit-learn: Stabilize 1.1.2 x86, #879985Sam James2022-11-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: Stabilize 2.6.0-r1 amd64, #879253Sam James2022-11-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-learn: Stabilize 1.1.2 amd64, #879985Sam James2022-11-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/stellarsolver: drop 2.2Andreas Sturmlechner2022-11-033-119/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: drop 1.9.6-r2, 1.9.7Andreas Sturmlechner2022-11-033-164/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/stellarsolver: Stabilize 2.4 x86, #878279Agostino Sarubbo2022-11-031-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.8 x86, #878279Agostino Sarubbo2022-11-031-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/stellarsolver: Stabilize 2.4 amd64, #878279Agostino Sarubbo2022-11-031-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.8 amd64, #878279Agostino Sarubbo2022-11-031-1/+1
| | | | Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.8 ppc, #878279Arthur Zamarin2022-11-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.8 ppc64, #878279Arthur Zamarin2022-11-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gdal: add 3.5.3Sam James2022-10-312-0/+240
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pdal: fix test interferencesThomas Bettler2022-10-311-0/+1
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/28054 Closes: https://bugs.gentoo.org/show_bug.cgi?id=878879 Signed-off-by: Thomas Bettler <thomas.bettler@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: update HOMEPAGEMichael Orlitzky2022-10-311-1/+1
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/pdal: Stabilize 2.4.0-r1 x86, #873793Joonas Niilola2022-10-311-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/pdal: skip failing testsThomas Bettler2022-10-311-1/+1
| | | | | | | Closes: https://bugs.gentoo.org/878443 Closes: https://github.com/gentoo/gentoo/pull/27987 Signed-off-by: Thomas Bettler <thomas.bettler@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/caffe2/files: [QA] use git-format-patch style patchesDavid Seifert2022-10-303-38/+20
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/xdrfile: EAPI 8Sam James2022-10-291-3/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-image: enable py3.11Andrew Ammerlaan2022-10-271-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/openblas: update HOMEPAGESam James2022-10-243-3/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/givaro: drop 4.1.1-r2Michael Orlitzky2022-10-241-56/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/brial: drop 1.2.10Michael Orlitzky2022-10-242-38/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/brial: Stabilize 1.2.11 amd64, #877781Joonas Niilola2022-10-241-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/brial: Stabilize 1.2.11 x86, #877781Joonas Niilola2022-10-241-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/givaro: Stabilize 4.1.1-r3 x86, #877783Joonas Niilola2022-10-241-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/givaro: Stabilize 4.1.1-r3 amd64, #877783Joonas Niilola2022-10-241-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/gdal: enable python3.11 and byte-compile pythonAndrew Ammerlaan2022-10-211-2/+2
| | | | | Closes: https://bugs.gentoo.org/866207 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dealii: fix ProbableGlobalUseSam James2022-10-201-4/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/xylib: align longdescription opening and closing tagsPetr Vaněk2022-10-201-1/+1
| | | | | Signed-off-by: Petr Vaněk <arkamar@atlas.cz> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/xgks-pmel: align longdescription opening and closing tagsPetr Vaněk2022-10-201-4/+4
| | | | | Signed-off-by: Petr Vaněk <arkamar@atlas.cz> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/umfpack: align longdescription opening and closing tagsPetr Vaněk2022-10-201-1/+1
| | | | | Signed-off-by: Petr Vaněk <arkamar@atlas.cz> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ufconfig: align longdescription opening and closing tagsPetr Vaněk2022-10-201-4/+4
| | | | | Signed-off-by: Petr Vaněk <arkamar@atlas.cz> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/trilinos: fix longdescription and flag indentationPetr Vaněk2022-10-201-6/+6
| | | | | Signed-off-by: Petr Vaněk <arkamar@atlas.cz> Signed-off-by: Sam James <sam@gentoo.org>