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DEFINED_PHASES=configure install postinst prepare setup
DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:= sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:= sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
REQUIRED_USE=python_targets_python2_7
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils b83a2420b796f7c6eff682679d08fe25 flag-o-matic 8632fcd33a047954f007dee9a137bdcc libtool 4890219c51da247200223277f993e054 multilib d062ae4ba2fc40a19c11de2ad89b6616 python-single-r1 2ebea8fbab356d63110245129a67a6dd python-utils-r1 c0ed2a2f233d3af6dd556048695dc5cb toolchain-funcs 6198c04daba0e1307bd844df7d37f423
_md5_=c2671ecf4508383b7b0a8ed81e5bf31c
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